Strain Fitness in Rahnella sp. WP5 around EX31_RS07540

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07535 and EX31_RS07540 are separated by 289 nucleotidesEX31_RS07540 and EX31_RS07545 are separated by 99 nucleotidesEX31_RS07545 and EX31_RS25970 are separated by 118 nucleotides EX31_RS07535: EX31_RS07535 - cytochrome b/b6 domain-containing protein, at 322,827 to 323,399 _RS07535 EX31_RS07540: EX31_RS07540 - helix-turn-helix transcriptional regulator, at 323,689 to 324,066 _RS07540 EX31_RS07545: EX31_RS07545 - SDR family oxidoreductase, at 324,166 to 324,897 _RS07545 EX31_RS25970: EX31_RS25970 - glutathione transferase GstA, at 325,016 to 325,123 _RS25970 Position (kb) 323 324 325Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 322.713 kb on + strandat 322.847 kb on + strandat 322.864 kb on - strandat 322.923 kb on - strand, within EX31_RS07535at 322.997 kb on - strand, within EX31_RS07535at 322.997 kb on - strand, within EX31_RS07535at 322.997 kb on - strand, within EX31_RS07535at 323.067 kb on - strand, within EX31_RS07535at 323.074 kb on - strand, within EX31_RS07535at 323.136 kb on + strand, within EX31_RS07535at 323.177 kb on + strand, within EX31_RS07535at 323.300 kb on + strand, within EX31_RS07535at 323.368 kb on - strandat 323.391 kb on - strandat 323.402 kb on + strandat 323.403 kb on - strandat 323.515 kb on - strandat 323.537 kb on + strandat 323.538 kb on - strandat 323.717 kb on + strandat 323.718 kb on - strandat 323.718 kb on - strandat 323.768 kb on + strand, within EX31_RS07540at 323.768 kb on + strand, within EX31_RS07540at 323.769 kb on - strand, within EX31_RS07540at 323.769 kb on - strand, within EX31_RS07540at 323.769 kb on - strand, within EX31_RS07540at 323.769 kb on - strand, within EX31_RS07540at 323.841 kb on + strand, within EX31_RS07540at 323.923 kb on + strand, within EX31_RS07540at 323.980 kb on + strand, within EX31_RS07540at 323.994 kb on + strand, within EX31_RS07540at 323.995 kb on - strand, within EX31_RS07540at 323.995 kb on - strand, within EX31_RS07540at 324.032 kb on - strandat 324.032 kb on - strandat 324.052 kb on - strandat 324.073 kb on - strandat 324.073 kb on - strandat 324.075 kb on - strandat 324.075 kb on - strandat 324.088 kb on + strandat 324.088 kb on + strandat 324.088 kb on + strandat 324.088 kb on + strandat 324.088 kb on + strandat 324.089 kb on - strandat 324.089 kb on - strandat 324.089 kb on - strandat 324.091 kb on + strandat 324.091 kb on + strandat 324.091 kb on + strandat 324.092 kb on - strandat 324.092 kb on - strandat 324.093 kb on + strandat 324.093 kb on + strandat 324.097 kb on + strandat 324.118 kb on - strandat 324.159 kb on + strandat 324.159 kb on + strandat 324.159 kb on + strandat 324.176 kb on + strandat 324.198 kb on - strandat 324.294 kb on - strand, within EX31_RS07545at 324.357 kb on - strand, within EX31_RS07545at 324.387 kb on + strand, within EX31_RS07545at 324.566 kb on + strand, within EX31_RS07545at 324.567 kb on - strand, within EX31_RS07545at 324.569 kb on + strand, within EX31_RS07545at 324.570 kb on - strand, within EX31_RS07545at 324.590 kb on + strand, within EX31_RS07545at 324.590 kb on + strand, within EX31_RS07545at 324.591 kb on - strand, within EX31_RS07545at 324.690 kb on + strand, within EX31_RS07545at 324.723 kb on + strand, within EX31_RS07545at 324.724 kb on - strand, within EX31_RS07545at 324.749 kb on + strand, within EX31_RS07545at 324.773 kb on + strand, within EX31_RS07545at 324.774 kb on - strand, within EX31_RS07545at 324.818 kb on + strand, within EX31_RS07545at 324.847 kb on + strandat 324.847 kb on + strandat 324.847 kb on + strandat 324.847 kb on + strandat 324.847 kb on + strandat 324.847 kb on + strandat 324.848 kb on - strandat 324.848 kb on - strandat 324.848 kb on - strandat 324.849 kb on + strandat 324.849 kb on + strandat 324.849 kb on + strandat 324.849 kb on + strandat 324.849 kb on + strandat 324.849 kb on + strandat 324.851 kb on + strandat 324.851 kb on + strandat 324.852 kb on - strandat 324.901 kb on + strandat 324.901 kb on + strandat 325.038 kb on - strand, within EX31_RS25970

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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322,713 + +0.1
322,847 + +1.7
322,864 - -0.1
322,923 - EX31_RS07535 0.17 -1.2
322,997 - EX31_RS07535 0.30 -2.1
322,997 - EX31_RS07535 0.30 +0.5
322,997 - EX31_RS07535 0.30 -2.3
323,067 - EX31_RS07535 0.42 +0.5
323,074 - EX31_RS07535 0.43 -0.9
323,136 + EX31_RS07535 0.54 -3.5
323,177 + EX31_RS07535 0.61 +0.1
323,300 + EX31_RS07535 0.83 -0.7
323,368 - +0.3
323,391 - -0.1
323,402 + +0.0
323,403 - -1.6
323,515 - -1.5
323,537 + -0.7
323,538 - -3.8
323,717 + -0.6
323,718 - +1.3
323,718 - +0.1
323,768 + EX31_RS07540 0.21 +0.4
323,768 + EX31_RS07540 0.21 -0.2
323,769 - EX31_RS07540 0.21 -1.1
323,769 - EX31_RS07540 0.21 -0.4
323,769 - EX31_RS07540 0.21 -0.8
323,769 - EX31_RS07540 0.21 -0.3
323,841 + EX31_RS07540 0.40 -1.1
323,923 + EX31_RS07540 0.62 +1.0
323,980 + EX31_RS07540 0.77 -0.9
323,994 + EX31_RS07540 0.81 -2.5
323,995 - EX31_RS07540 0.81 -1.2
323,995 - EX31_RS07540 0.81 +0.1
324,032 - +0.7
324,032 - -0.3
324,052 - +0.8
324,073 - +1.4
324,073 - +0.4
324,075 - -1.3
324,075 - -0.3
324,088 + +1.2
324,088 + -0.2
324,088 + +0.2
324,088 + +0.1
324,088 + -1.6
324,089 - +0.2
324,089 - +0.0
324,089 - -0.6
324,091 + -0.4
324,091 + -1.3
324,091 + -0.5
324,092 - -0.4
324,092 - -0.1
324,093 + -0.9
324,093 + -0.9
324,097 + +1.4
324,118 - -0.9
324,159 + -0.2
324,159 + +0.1
324,159 + +1.1
324,176 + +0.8
324,198 - -0.3
324,294 - EX31_RS07545 0.17 +0.6
324,357 - EX31_RS07545 0.26 -0.1
324,387 + EX31_RS07545 0.30 +0.4
324,566 + EX31_RS07545 0.55 +0.4
324,567 - EX31_RS07545 0.55 -0.4
324,569 + EX31_RS07545 0.55 +0.3
324,570 - EX31_RS07545 0.55 +2.0
324,590 + EX31_RS07545 0.58 +0.2
324,590 + EX31_RS07545 0.58 -1.2
324,591 - EX31_RS07545 0.58 -0.1
324,690 + EX31_RS07545 0.72 -0.3
324,723 + EX31_RS07545 0.76 +2.4
324,724 - EX31_RS07545 0.76 +0.9
324,749 + EX31_RS07545 0.80 +0.4
324,773 + EX31_RS07545 0.83 -0.8
324,774 - EX31_RS07545 0.83 +0.4
324,818 + EX31_RS07545 0.89 -0.4
324,847 + -0.8
324,847 + +0.7
324,847 + +0.4
324,847 + -0.0
324,847 + +0.2
324,847 + +0.1
324,848 - -0.9
324,848 - -1.5
324,848 - +0.4
324,849 + -0.1
324,849 + +0.8
324,849 + +0.1
324,849 + -0.6
324,849 + +0.3
324,849 + +1.5
324,851 + -0.9
324,851 + +0.3
324,852 - +0.1
324,901 + -0.7
324,901 + +0.7
325,038 - EX31_RS25970 0.20 +0.3

Or see this region's nucleotide sequence