Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05585 and EX31_RS05590 are separated by 271 nucleotides EX31_RS05590 and EX31_RS05595 are separated by 134 nucleotides EX31_RS05595 and EX31_RS05600 are separated by 70 nucleotides
EX31_RS05585: EX31_RS05585 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 269,288 to 270,967
_RS05585
EX31_RS05590: EX31_RS05590 - organic hydroperoxide resistance protein, at 271,239 to 271,661
_RS05590
EX31_RS05595: EX31_RS05595 - MarR family transcriptional regulator, at 271,796 to 272,254
_RS05595
EX31_RS05600: EX31_RS05600 - alpha/beta hydrolase, at 272,325 to 273,770
_RS05600
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 270.797 kb on + strand, within EX31_RS05585 at 270.797 kb on + strand, within EX31_RS05585 at 270.798 kb on - strand, within EX31_RS05585 at 270.798 kb on - strand, within EX31_RS05585 at 270.798 kb on - strand, within EX31_RS05585 at 270.798 kb on - strand, within EX31_RS05585 at 270.798 kb on - strand, within EX31_RS05585 at 270.912 kb on + strand at 270.913 kb on - strand at 270.926 kb on + strand at 270.926 kb on + strand at 270.927 kb on - strand at 270.934 kb on + strand at 270.935 kb on - strand at 270.935 kb on - strand at 270.935 kb on - strand at 270.961 kb on + strand at 270.962 kb on - strand at 270.962 kb on - strand at 270.988 kb on + strand at 270.989 kb on - strand at 270.989 kb on - strand at 270.989 kb on - strand at 271.044 kb on + strand at 271.045 kb on - strand at 271.045 kb on - strand at 271.063 kb on + strand at 271.063 kb on + strand at 271.063 kb on + strand at 271.064 kb on - strand at 271.081 kb on - strand at 271.104 kb on + strand at 271.120 kb on - strand at 271.150 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.193 kb on + strand at 271.194 kb on - strand at 271.194 kb on - strand at 271.194 kb on - strand at 271.194 kb on - strand at 271.195 kb on + strand at 271.195 kb on + strand at 271.195 kb on + strand at 271.195 kb on + strand at 271.195 kb on + strand at 271.195 kb on + strand at 271.195 kb on + strand at 271.195 kb on + strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.196 kb on - strand at 271.240 kb on + strand at 271.240 kb on + strand at 271.240 kb on + strand at 271.240 kb on + strand at 271.240 kb on + strand at 271.240 kb on + strand at 271.240 kb on + strand at 271.240 kb on + strand at 271.241 kb on - strand at 271.241 kb on - strand at 271.241 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.356 kb on - strand, within EX31_RS05590 at 271.359 kb on - strand, within EX31_RS05590 at 271.368 kb on + strand, within EX31_RS05590 at 271.368 kb on + strand, within EX31_RS05590 at 271.369 kb on - strand, within EX31_RS05590 at 271.407 kb on + strand, within EX31_RS05590 at 271.408 kb on - strand, within EX31_RS05590 at 271.442 kb on + strand, within EX31_RS05590 at 271.442 kb on + strand, within EX31_RS05590 at 271.443 kb on - strand, within EX31_RS05590 at 271.443 kb on - strand, within EX31_RS05590 at 271.495 kb on + strand, within EX31_RS05590 at 271.496 kb on - strand, within EX31_RS05590 at 271.639 kb on + strand at 271.639 kb on + strand at 271.640 kb on - strand at 271.656 kb on - strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.661 kb on + strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.662 kb on - strand at 271.674 kb on - strand at 271.674 kb on - strand at 271.674 kb on - strand at 271.674 kb on - strand at 271.674 kb on - strand at 271.682 kb on + strand at 271.682 kb on + strand at 271.683 kb on - strand at 271.683 kb on - strand at 271.686 kb on + strand at 271.686 kb on + strand at 271.687 kb on - strand at 271.687 kb on - strand at 271.687 kb on - strand at 271.687 kb on - strand at 271.691 kb on - strand at 271.734 kb on - strand at 271.734 kb on - strand at 271.782 kb on + strand at 271.782 kb on + strand at 271.782 kb on + strand at 271.782 kb on + strand at 271.783 kb on - strand at 271.783 kb on - strand at 271.783 kb on - strand at 271.783 kb on - strand at 271.804 kb on + strand at 271.824 kb on - strand at 271.827 kb on - strand at 271.827 kb on - strand at 271.827 kb on - strand at 271.948 kb on + strand, within EX31_RS05595 at 271.949 kb on - strand, within EX31_RS05595 at 271.949 kb on - strand, within EX31_RS05595 at 271.949 kb on - strand, within EX31_RS05595 at 271.949 kb on - strand, within EX31_RS05595 at 271.949 kb on - strand, within EX31_RS05595 at 272.145 kb on - strand, within EX31_RS05595 at 272.145 kb on - strand, within EX31_RS05595 at 272.150 kb on - strand, within EX31_RS05595 at 272.150 kb on - strand, within EX31_RS05595 at 272.150 kb on - strand, within EX31_RS05595 at 272.150 kb on - strand, within EX31_RS05595 at 272.150 kb on - strand, within EX31_RS05595 at 272.150 kb on - strand, within EX31_RS05595 at 272.155 kb on - strand, within EX31_RS05595 at 272.185 kb on - strand, within EX31_RS05595 at 272.269 kb on + strand at 272.273 kb on + strand at 272.274 kb on - strand at 272.276 kb on - strand at 272.313 kb on - strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.351 kb on + strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.352 kb on - strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.353 kb on + strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.354 kb on - strand at 272.360 kb on - strand at 272.486 kb on - strand, within EX31_RS05600 at 272.548 kb on + strand, within EX31_RS05600 at 272.549 kb on - strand, within EX31_RS05600 at 272.568 kb on - strand, within EX31_RS05600 at 272.568 kb on - strand, within EX31_RS05600 at 272.656 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.728 kb on + strand, within EX31_RS05600 at 272.729 kb on - strand, within EX31_RS05600 at 272.729 kb on - strand, within EX31_RS05600 at 272.729 kb on - strand, within EX31_RS05600 at 272.729 kb on - strand, within EX31_RS05600 at 272.729 kb on - strand, within EX31_RS05600 at 272.729 kb on - strand, within EX31_RS05600 at 272.744 kb on + strand, within EX31_RS05600 at 272.786 kb on + strand, within EX31_RS05600 at 272.787 kb on - strand, within EX31_RS05600 at 272.926 kb on + strand, within EX31_RS05600 at 272.926 kb on + strand, within EX31_RS05600 at 272.926 kb on + strand, within EX31_RS05600 at 272.963 kb on - strand, within EX31_RS05600 at 272.976 kb on - strand, within EX31_RS05600 at 273.145 kb on + strand, within EX31_RS05600 at 273.145 kb on + strand, within EX31_RS05600 at 273.145 kb on + strand, within EX31_RS05600 at 273.145 kb on + strand, within EX31_RS05600 at 273.145 kb on + strand, within EX31_RS05600 at 273.145 kb on + strand, within EX31_RS05600 at 273.145 kb on + strand, within EX31_RS05600 at 273.146 kb on - strand, within EX31_RS05600 at 273.146 kb on - strand, within EX31_RS05600 at 273.146 kb on - strand, within EX31_RS05600 at 273.146 kb on - strand, within EX31_RS05600 at 273.146 kb on - strand, within EX31_RS05600 at 273.195 kb on + strand, within EX31_RS05600 at 273.195 kb on + strand, within EX31_RS05600 at 273.195 kb on + strand, within EX31_RS05600 at 273.196 kb on - strand, within EX31_RS05600 at 273.196 kb on - strand, within EX31_RS05600 at 273.196 kb on - strand, within EX31_RS05600 at 273.196 kb on - strand, within EX31_RS05600 at 273.196 kb on - strand, within EX31_RS05600
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 270,797 + EX31_RS05585 0.90 -0.9 270,797 + EX31_RS05585 0.90 -0.5 270,798 - EX31_RS05585 0.90 +0.1 270,798 - EX31_RS05585 0.90 -0.1 270,798 - EX31_RS05585 0.90 -0.3 270,798 - EX31_RS05585 0.90 +0.1 270,798 - EX31_RS05585 0.90 +0.1 270,912 + -0.1 270,913 - +0.5 270,926 + +0.5 270,926 + -0.3 270,927 - +0.1 270,934 + +0.3 270,935 - -0.3 270,935 - +0.1 270,935 - -0.0 270,961 + -0.9 270,962 - +0.6 270,962 - -1.2 270,988 + +0.5 270,989 - -0.3 270,989 - +0.2 270,989 - +0.5 271,044 + -0.6 271,045 - +0.0 271,045 - +0.5 271,063 + +0.6 271,063 + +0.0 271,063 + -1.1 271,064 - -0.6 271,081 - +0.4 271,104 + +0.3 271,120 - +0.3 271,150 + +0.0 271,193 + -0.1 271,193 + +0.3 271,193 + +0.5 271,193 + +0.0 271,193 + +0.0 271,193 + +0.5 271,193 + +0.4 271,193 + -0.0 271,193 + +0.3 271,194 - +0.2 271,194 - +0.5 271,194 - +0.2 271,194 - +0.7 271,195 + -0.1 271,195 + +0.3 271,195 + -0.4 271,195 + +0.2 271,195 + +0.4 271,195 + -0.5 271,195 + +0.2 271,195 + +0.2 271,196 - +0.5 271,196 - -0.4 271,196 - +0.3 271,196 - -0.0 271,196 - +0.2 271,196 - +0.9 271,196 - +0.3 271,196 - -1.9 271,196 - +0.0 271,196 - -0.3 271,240 + -0.3 271,240 + +0.3 271,240 + +0.2 271,240 + -0.1 271,240 + +0.1 271,240 + -1.0 271,240 + +0.7 271,240 + +0.4 271,241 - +0.0 271,241 - -0.1 271,241 - +0.2 271,245 - -0.2 271,245 - +0.5 271,245 - +0.7 271,245 - +0.1 271,245 - +0.3 271,245 - -0.9 271,356 - EX31_RS05590 0.28 -0.0 271,359 - EX31_RS05590 0.28 +0.0 271,368 + EX31_RS05590 0.30 -0.4 271,368 + EX31_RS05590 0.30 -1.2 271,369 - EX31_RS05590 0.31 -0.3 271,407 + EX31_RS05590 0.40 -1.5 271,408 - EX31_RS05590 0.40 +0.2 271,442 + EX31_RS05590 0.48 -0.3 271,442 + EX31_RS05590 0.48 +0.3 271,443 - EX31_RS05590 0.48 +0.3 271,443 - EX31_RS05590 0.48 -0.5 271,495 + EX31_RS05590 0.61 -0.6 271,496 - EX31_RS05590 0.61 +0.0 271,639 + +0.4 271,639 + -0.6 271,640 - -0.3 271,656 - -0.2 271,661 + -0.2 271,661 + -0.2 271,661 + -2.1 271,661 + -0.6 271,661 + -1.5 271,661 + -0.4 271,661 + -1.4 271,661 + +0.1 271,661 + +1.5 271,661 + -0.1 271,661 + -0.1 271,661 + +0.0 271,661 + +0.1 271,662 - -0.3 271,662 - +0.7 271,662 - -0.5 271,662 - +0.2 271,662 - +0.9 271,662 - -0.0 271,662 - +0.6 271,662 - +0.6 271,662 - -0.1 271,662 - +1.1 271,662 - +0.4 271,662 - +0.1 271,662 - +0.1 271,662 - +0.5 271,662 - -1.1 271,662 - +0.1 271,662 - +0.1 271,662 - -0.0 271,662 - +0.1 271,674 - -0.0 271,674 - +0.1 271,674 - -0.3 271,674 - +0.1 271,674 - -0.1 271,682 + +0.2 271,682 + +0.3 271,683 - -0.0 271,683 - +0.4 271,686 + -0.3 271,686 + +0.0 271,687 - +0.3 271,687 - +0.3 271,687 - +0.4 271,687 - +0.2 271,691 - -0.3 271,734 - +0.6 271,734 - -0.3 271,782 + -0.3 271,782 + -0.8 271,782 + -1.0 271,782 + +0.4 271,783 - +0.0 271,783 - +0.5 271,783 - +0.0 271,783 - +0.6 271,804 + +0.1 271,824 - +0.2 271,827 - +1.1 271,827 - +0.8 271,827 - +0.7 271,948 + EX31_RS05595 0.33 -0.1 271,949 - EX31_RS05595 0.33 +0.6 271,949 - EX31_RS05595 0.33 +0.9 271,949 - EX31_RS05595 0.33 +1.2 271,949 - EX31_RS05595 0.33 +0.8 271,949 - EX31_RS05595 0.33 +0.5 272,145 - EX31_RS05595 0.76 +0.8 272,145 - EX31_RS05595 0.76 +1.1 272,150 - EX31_RS05595 0.77 +0.8 272,150 - EX31_RS05595 0.77 +1.1 272,150 - EX31_RS05595 0.77 +1.6 272,150 - EX31_RS05595 0.77 +0.8 272,150 - EX31_RS05595 0.77 +0.2 272,150 - EX31_RS05595 0.77 -1.0 272,155 - EX31_RS05595 0.78 +0.7 272,185 - EX31_RS05595 0.85 +1.1 272,269 + -0.5 272,273 + -0.1 272,274 - -0.8 272,276 - +0.2 272,313 - +0.3 272,351 + +0.2 272,351 + -1.2 272,351 + +0.6 272,351 + -0.5 272,351 + -0.1 272,351 + -0.1 272,351 + -0.7 272,351 + +0.2 272,351 + +0.5 272,351 + +0.2 272,351 + -0.2 272,351 + -0.1 272,351 + -1.3 272,351 + -0.9 272,351 + -0.2 272,351 + -0.9 272,351 + +0.6 272,352 - +0.2 272,352 - -0.9 272,352 - +0.2 272,352 - -0.5 272,352 - -0.1 272,352 - -0.6 272,352 - -0.2 272,352 - -0.3 272,352 - -0.6 272,352 - -0.4 272,352 - -0.8 272,352 - -0.5 272,352 - +0.4 272,352 - -0.1 272,352 - +0.3 272,353 + +0.3 272,353 + -1.1 272,353 + -0.3 272,353 + +0.7 272,353 + +0.3 272,353 + +0.5 272,353 + +0.4 272,353 + +0.3 272,353 + +0.5 272,353 + +0.2 272,353 + +0.4 272,354 - +0.6 272,354 - +0.4 272,354 - -0.5 272,354 - -0.0 272,354 - +0.1 272,354 - +0.1 272,354 - +0.4 272,354 - -0.1 272,354 - +0.1 272,360 - -0.1 272,486 - EX31_RS05600 0.11 -0.4 272,548 + EX31_RS05600 0.15 -0.2 272,549 - EX31_RS05600 0.15 +0.3 272,568 - EX31_RS05600 0.17 -0.5 272,568 - EX31_RS05600 0.17 +0.1 272,656 + EX31_RS05600 0.23 +1.2 272,728 + EX31_RS05600 0.28 +0.0 272,728 + EX31_RS05600 0.28 -0.6 272,728 + EX31_RS05600 0.28 +0.0 272,728 + EX31_RS05600 0.28 -0.6 272,728 + EX31_RS05600 0.28 -0.8 272,728 + EX31_RS05600 0.28 -0.1 272,728 + EX31_RS05600 0.28 +0.2 272,728 + EX31_RS05600 0.28 +0.8 272,728 + EX31_RS05600 0.28 +0.1 272,729 - EX31_RS05600 0.28 -0.1 272,729 - EX31_RS05600 0.28 +0.5 272,729 - EX31_RS05600 0.28 +0.2 272,729 - EX31_RS05600 0.28 +0.2 272,729 - EX31_RS05600 0.28 -2.0 272,729 - EX31_RS05600 0.28 +0.4 272,744 + EX31_RS05600 0.29 +0.2 272,786 + EX31_RS05600 0.32 +0.1 272,787 - EX31_RS05600 0.32 +0.2 272,926 + EX31_RS05600 0.42 -0.8 272,926 + EX31_RS05600 0.42 +0.4 272,926 + EX31_RS05600 0.42 +1.2 272,963 - EX31_RS05600 0.44 -0.3 272,976 - EX31_RS05600 0.45 -0.6 273,145 + EX31_RS05600 0.57 +0.2 273,145 + EX31_RS05600 0.57 +0.8 273,145 + EX31_RS05600 0.57 +0.5 273,145 + EX31_RS05600 0.57 -0.1 273,145 + EX31_RS05600 0.57 +0.5 273,145 + EX31_RS05600 0.57 -0.1 273,145 + EX31_RS05600 0.57 +0.4 273,146 - EX31_RS05600 0.57 +0.2 273,146 - EX31_RS05600 0.57 -0.1 273,146 - EX31_RS05600 0.57 -0.0 273,146 - EX31_RS05600 0.57 +0.1 273,146 - EX31_RS05600 0.57 -0.6 273,195 + EX31_RS05600 0.60 +0.3 273,195 + EX31_RS05600 0.60 +0.9 273,195 + EX31_RS05600 0.60 -0.2 273,196 - EX31_RS05600 0.60 +0.2 273,196 - EX31_RS05600 0.60 -0.3 273,196 - EX31_RS05600 0.60 +0.8 273,196 - EX31_RS05600 0.60 +0.5 273,196 - EX31_RS05600 0.60 -1.8
Or see this region's nucleotide sequence