Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02350 and EX31_RS02355 are separated by 205 nucleotides EX31_RS02355 and EX31_RS02360 are separated by 82 nucleotides EX31_RS02360 and EX31_RS02365 are separated by 158 nucleotides EX31_RS02365 and EX31_RS02370 are separated by 224 nucleotides
EX31_RS02350: EX31_RS02350 - diguanylate phosphodiesterase, at 504,830 to 506,071
_RS02350
EX31_RS02355: EX31_RS02355 - tellurite resistance methyltransferase TehB, at 506,277 to 506,876
_RS02355
EX31_RS02360: EX31_RS02360 - CsbD family protein, at 506,959 to 507,231
_RS02360
EX31_RS02365: EX31_RS02365 - hypothetical protein, at 507,390 to 507,587
_RS02365
EX31_RS02370: EX31_RS02370 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 507,812 to 508,042
_RS02370
Position (kb) 506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 505.328 kb on + strand, within EX31_RS02350 at 505.328 kb on + strand, within EX31_RS02350 at 505.429 kb on - strand, within EX31_RS02350 at 505.504 kb on - strand, within EX31_RS02350 at 505.504 kb on - strand, within EX31_RS02350 at 505.504 kb on - strand, within EX31_RS02350 at 505.510 kb on + strand, within EX31_RS02350 at 505.546 kb on - strand, within EX31_RS02350 at 505.546 kb on - strand, within EX31_RS02350 at 505.550 kb on - strand, within EX31_RS02350 at 505.550 kb on - strand, within EX31_RS02350 at 505.550 kb on - strand, within EX31_RS02350 at 505.580 kb on - strand, within EX31_RS02350 at 505.673 kb on + strand, within EX31_RS02350 at 505.674 kb on - strand, within EX31_RS02350 at 505.674 kb on - strand, within EX31_RS02350 at 505.674 kb on - strand, within EX31_RS02350 at 505.710 kb on + strand, within EX31_RS02350 at 505.711 kb on - strand, within EX31_RS02350 at 505.711 kb on - strand, within EX31_RS02350 at 505.711 kb on - strand, within EX31_RS02350 at 505.711 kb on - strand, within EX31_RS02350 at 505.711 kb on - strand, within EX31_RS02350 at 505.855 kb on + strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.856 kb on - strand, within EX31_RS02350 at 505.885 kb on + strand, within EX31_RS02350 at 505.885 kb on + strand, within EX31_RS02350 at 505.886 kb on - strand, within EX31_RS02350 at 505.886 kb on - strand, within EX31_RS02350 at 505.886 kb on - strand, within EX31_RS02350 at 505.887 kb on + strand, within EX31_RS02350 at 505.887 kb on + strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.888 kb on - strand, within EX31_RS02350 at 505.966 kb on + strand at 505.967 kb on - strand at 506.064 kb on - strand at 506.098 kb on + strand at 506.099 kb on - strand at 506.099 kb on - strand at 506.112 kb on + strand at 506.163 kb on + strand at 506.163 kb on + strand at 506.164 kb on - strand at 506.164 kb on - strand at 506.164 kb on - strand at 506.206 kb on + strand at 506.207 kb on - strand at 506.262 kb on + strand at 506.263 kb on - strand at 506.378 kb on + strand, within EX31_RS02355 at 506.517 kb on - strand, within EX31_RS02355 at 506.525 kb on + strand, within EX31_RS02355 at 506.630 kb on + strand, within EX31_RS02355 at 506.669 kb on + strand, within EX31_RS02355 at 506.757 kb on + strand, within EX31_RS02355 at 506.758 kb on - strand, within EX31_RS02355 at 506.758 kb on - strand, within EX31_RS02355 at 506.758 kb on - strand, within EX31_RS02355 at 506.835 kb on + strand at 506.932 kb on + strand at 506.932 kb on + strand at 506.958 kb on + strand at 506.958 kb on + strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 507.088 kb on - strand, within EX31_RS02360 at 507.106 kb on + strand, within EX31_RS02360 at 507.106 kb on + strand, within EX31_RS02360 at 507.107 kb on - strand, within EX31_RS02360 at 507.107 kb on - strand, within EX31_RS02360 at 507.213 kb on - strand at 507.213 kb on - strand at 507.229 kb on + strand at 507.230 kb on - strand at 507.284 kb on - strand at 507.284 kb on - strand at 507.315 kb on + strand at 507.315 kb on + strand at 507.334 kb on + strand at 507.503 kb on + strand, within EX31_RS02365 at 507.522 kb on + strand, within EX31_RS02365 at 507.621 kb on + strand at 507.631 kb on + strand at 507.631 kb on + strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.635 kb on + strand at 507.635 kb on + strand at 507.635 kb on + strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.647 kb on - strand at 507.647 kb on - strand at 507.775 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 505,328 + EX31_RS02350 0.40 -0.7 505,328 + EX31_RS02350 0.40 -0.7 505,429 - EX31_RS02350 0.48 +0.5 505,504 - EX31_RS02350 0.54 +0.3 505,504 - EX31_RS02350 0.54 -0.3 505,504 - EX31_RS02350 0.54 +0.1 505,510 + EX31_RS02350 0.55 -0.5 505,546 - EX31_RS02350 0.58 +1.1 505,546 - EX31_RS02350 0.58 +0.4 505,550 - EX31_RS02350 0.58 -0.4 505,550 - EX31_RS02350 0.58 +0.1 505,550 - EX31_RS02350 0.58 -1.0 505,580 - EX31_RS02350 0.60 +0.8 505,673 + EX31_RS02350 0.68 -0.2 505,674 - EX31_RS02350 0.68 +0.6 505,674 - EX31_RS02350 0.68 +0.4 505,674 - EX31_RS02350 0.68 +0.1 505,710 + EX31_RS02350 0.71 -2.2 505,711 - EX31_RS02350 0.71 +0.0 505,711 - EX31_RS02350 0.71 +0.7 505,711 - EX31_RS02350 0.71 +0.1 505,711 - EX31_RS02350 0.71 -0.3 505,711 - EX31_RS02350 0.71 +0.2 505,855 + EX31_RS02350 0.83 -0.6 505,856 - EX31_RS02350 0.83 +0.1 505,856 - EX31_RS02350 0.83 +1.4 505,856 - EX31_RS02350 0.83 +0.1 505,856 - EX31_RS02350 0.83 -1.8 505,856 - EX31_RS02350 0.83 -1.0 505,856 - EX31_RS02350 0.83 +0.0 505,856 - EX31_RS02350 0.83 +0.0 505,856 - EX31_RS02350 0.83 -0.5 505,856 - EX31_RS02350 0.83 +0.8 505,885 + EX31_RS02350 0.85 +0.8 505,885 + EX31_RS02350 0.85 -0.2 505,886 - EX31_RS02350 0.85 -0.3 505,886 - EX31_RS02350 0.85 -0.1 505,886 - EX31_RS02350 0.85 -1.1 505,887 + EX31_RS02350 0.85 -0.9 505,887 + EX31_RS02350 0.85 +0.1 505,888 - EX31_RS02350 0.85 +0.5 505,888 - EX31_RS02350 0.85 +0.6 505,888 - EX31_RS02350 0.85 +0.8 505,888 - EX31_RS02350 0.85 -0.5 505,888 - EX31_RS02350 0.85 +0.3 505,888 - EX31_RS02350 0.85 +0.2 505,888 - EX31_RS02350 0.85 +0.6 505,888 - EX31_RS02350 0.85 +0.0 505,888 - EX31_RS02350 0.85 -0.8 505,888 - EX31_RS02350 0.85 -1.2 505,966 + -0.4 505,967 - +0.6 506,064 - +1.1 506,098 + -0.2 506,099 - +0.8 506,099 - -0.1 506,112 + +1.1 506,163 + +1.4 506,163 + +0.8 506,164 - -0.4 506,164 - -0.1 506,164 - +0.8 506,206 + +1.3 506,207 - -2.3 506,262 + -0.2 506,263 - -1.0 506,378 + EX31_RS02355 0.17 -1.0 506,517 - EX31_RS02355 0.40 +0.2 506,525 + EX31_RS02355 0.41 +2.6 506,630 + EX31_RS02355 0.59 -0.6 506,669 + EX31_RS02355 0.65 -0.4 506,757 + EX31_RS02355 0.80 -2.1 506,758 - EX31_RS02355 0.80 -1.6 506,758 - EX31_RS02355 0.80 -0.2 506,758 - EX31_RS02355 0.80 -0.6 506,835 + +0.1 506,932 + -0.4 506,932 + -2.1 506,958 + -0.9 506,958 + -1.8 506,959 - -0.3 506,959 - +1.1 506,959 - -0.3 506,959 - +0.2 506,959 - -0.2 506,959 - -0.8 507,088 - EX31_RS02360 0.47 -0.8 507,106 + EX31_RS02360 0.54 +0.2 507,106 + EX31_RS02360 0.54 -0.4 507,107 - EX31_RS02360 0.54 -0.4 507,107 - EX31_RS02360 0.54 -2.7 507,213 - +0.1 507,213 - -0.1 507,229 + +0.8 507,230 - -1.0 507,284 - -1.8 507,284 - -0.5 507,315 + +0.0 507,315 + +0.7 507,334 + +0.0 507,503 + EX31_RS02365 0.57 -0.7 507,522 + EX31_RS02365 0.67 +0.4 507,621 + -0.6 507,631 + -2.9 507,631 + -0.6 507,632 - +0.3 507,632 - -1.2 507,632 - -0.5 507,632 - +0.1 507,635 + +0.5 507,635 + +0.4 507,635 + -0.3 507,636 - +1.4 507,636 - -0.2 507,636 - +0.3 507,636 - +0.3 507,636 - -0.1 507,636 - +0.9 507,636 - +0.2 507,636 - -0.1 507,636 - -1.6 507,636 - -0.4 507,636 - +0.5 507,636 - -1.9 507,636 - +0.1 507,646 + -2.0 507,646 + -0.3 507,646 + -0.4 507,646 + +0.6 507,646 + +1.4 507,646 + -0.7 507,647 - +0.8 507,647 - +0.6 507,775 + -0.0
Or see this region's nucleotide sequence