Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02095 and EX31_RS02100 are separated by 34 nucleotides EX31_RS02100 and EX31_RS02105 overlap by 1 nucleotides EX31_RS02105 and EX31_RS02110 overlap by 4 nucleotides
EX31_RS02095: EX31_RS02095 - L-fuconate dehydratase, at 459,261 to 460,538
_RS02095
EX31_RS02100: EX31_RS02100 - amidohydrolase family protein, at 460,573 to 461,427
_RS02100
EX31_RS02105: EX31_RS02105 - SDR family oxidoreductase, at 461,427 to 462,203
_RS02105
EX31_RS02110: EX31_RS02110 - L-rhamnose mutarotase, at 462,200 to 462,544
_RS02110
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 459.625 kb on + strand, within EX31_RS02095 at 459.625 kb on + strand, within EX31_RS02095 at 459.625 kb on + strand, within EX31_RS02095 at 459.811 kb on - strand, within EX31_RS02095 at 459.819 kb on + strand, within EX31_RS02095 at 459.820 kb on - strand, within EX31_RS02095 at 459.871 kb on + strand, within EX31_RS02095 at 459.871 kb on + strand, within EX31_RS02095 at 459.871 kb on + strand, within EX31_RS02095 at 459.872 kb on - strand, within EX31_RS02095 at 459.903 kb on + strand, within EX31_RS02095 at 460.012 kb on + strand, within EX31_RS02095 at 460.073 kb on + strand, within EX31_RS02095 at 460.197 kb on - strand, within EX31_RS02095 at 460.287 kb on + strand, within EX31_RS02095 at 460.287 kb on + strand, within EX31_RS02095 at 460.287 kb on + strand, within EX31_RS02095 at 460.287 kb on + strand, within EX31_RS02095 at 460.287 kb on + strand, within EX31_RS02095 at 460.288 kb on - strand, within EX31_RS02095 at 460.335 kb on + strand, within EX31_RS02095 at 460.362 kb on + strand, within EX31_RS02095 at 460.362 kb on + strand, within EX31_RS02095 at 460.380 kb on - strand, within EX31_RS02095 at 460.461 kb on + strand at 460.461 kb on + strand at 460.461 kb on + strand at 460.461 kb on + strand at 460.461 kb on + strand at 460.461 kb on + strand at 460.461 kb on + strand at 460.461 kb on + strand at 460.462 kb on - strand at 460.462 kb on - strand at 460.462 kb on - strand at 460.462 kb on - strand at 460.463 kb on + strand at 460.464 kb on - strand at 460.464 kb on - strand at 460.542 kb on + strand at 460.542 kb on + strand at 460.543 kb on - strand at 460.609 kb on + strand at 460.679 kb on + strand, within EX31_RS02100 at 460.679 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.972 kb on + strand, within EX31_RS02100 at 460.973 kb on - strand, within EX31_RS02100 at 460.973 kb on - strand, within EX31_RS02100 at 460.973 kb on - strand, within EX31_RS02100 at 460.973 kb on - strand, within EX31_RS02100 at 460.973 kb on - strand, within EX31_RS02100 at 460.973 kb on - strand, within EX31_RS02100 at 460.973 kb on - strand, within EX31_RS02100 at 460.979 kb on - strand, within EX31_RS02100 at 461.044 kb on + strand, within EX31_RS02100 at 461.315 kb on + strand, within EX31_RS02100 at 461.315 kb on + strand, within EX31_RS02100 at 461.315 kb on + strand, within EX31_RS02100 at 461.365 kb on + strand at 461.366 kb on - strand at 461.396 kb on + strand at 461.447 kb on + strand at 461.448 kb on - strand at 461.605 kb on + strand, within EX31_RS02105 at 461.694 kb on - strand, within EX31_RS02105 at 461.775 kb on + strand, within EX31_RS02105 at 461.779 kb on - strand, within EX31_RS02105 at 461.838 kb on - strand, within EX31_RS02105 at 462.077 kb on + strand, within EX31_RS02105 at 462.077 kb on + strand, within EX31_RS02105 at 462.078 kb on - strand, within EX31_RS02105 at 462.078 kb on - strand, within EX31_RS02105 at 462.174 kb on + strand at 462.175 kb on - strand at 462.175 kb on - strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.251 kb on - strand, within EX31_RS02110 at 462.251 kb on - strand, within EX31_RS02110 at 462.260 kb on + strand, within EX31_RS02110 at 462.261 kb on - strand, within EX31_RS02110 at 462.261 kb on - strand, within EX31_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 459,625 + EX31_RS02095 0.28 +1.0 459,625 + EX31_RS02095 0.28 +0.5 459,625 + EX31_RS02095 0.28 -0.6 459,811 - EX31_RS02095 0.43 +0.6 459,819 + EX31_RS02095 0.44 -0.0 459,820 - EX31_RS02095 0.44 +0.3 459,871 + EX31_RS02095 0.48 +0.9 459,871 + EX31_RS02095 0.48 +0.2 459,871 + EX31_RS02095 0.48 -0.2 459,872 - EX31_RS02095 0.48 +0.4 459,903 + EX31_RS02095 0.50 -0.1 460,012 + EX31_RS02095 0.59 -0.1 460,073 + EX31_RS02095 0.64 -0.7 460,197 - EX31_RS02095 0.73 -0.1 460,287 + EX31_RS02095 0.80 +0.6 460,287 + EX31_RS02095 0.80 +0.7 460,287 + EX31_RS02095 0.80 +0.5 460,287 + EX31_RS02095 0.80 -1.5 460,287 + EX31_RS02095 0.80 -0.4 460,288 - EX31_RS02095 0.80 -2.6 460,335 + EX31_RS02095 0.84 +0.2 460,362 + EX31_RS02095 0.86 +0.4 460,362 + EX31_RS02095 0.86 +1.5 460,380 - EX31_RS02095 0.88 +0.1 460,461 + +1.1 460,461 + +0.7 460,461 + -0.3 460,461 + +0.7 460,461 + +0.7 460,461 + -0.3 460,461 + +0.2 460,461 + -0.9 460,462 - -0.3 460,462 - +0.4 460,462 - +1.3 460,462 - -0.1 460,463 + +1.0 460,464 - +0.4 460,464 - -1.9 460,542 + -0.0 460,542 + -0.3 460,543 - +1.1 460,609 + -1.0 460,679 + EX31_RS02100 0.12 -0.3 460,679 + EX31_RS02100 0.12 -0.6 460,972 + EX31_RS02100 0.47 +2.8 460,972 + EX31_RS02100 0.47 +0.2 460,972 + EX31_RS02100 0.47 -0.6 460,972 + EX31_RS02100 0.47 +0.5 460,972 + EX31_RS02100 0.47 -0.0 460,972 + EX31_RS02100 0.47 +0.8 460,972 + EX31_RS02100 0.47 +1.1 460,972 + EX31_RS02100 0.47 -1.0 460,973 - EX31_RS02100 0.47 +0.4 460,973 - EX31_RS02100 0.47 +1.3 460,973 - EX31_RS02100 0.47 +1.6 460,973 - EX31_RS02100 0.47 +0.5 460,973 - EX31_RS02100 0.47 +0.4 460,973 - EX31_RS02100 0.47 -1.7 460,973 - EX31_RS02100 0.47 +0.2 460,979 - EX31_RS02100 0.47 -0.9 461,044 + EX31_RS02100 0.55 +0.1 461,315 + EX31_RS02100 0.87 +1.5 461,315 + EX31_RS02100 0.87 +1.6 461,315 + EX31_RS02100 0.87 +0.6 461,365 + +0.3 461,366 - -0.3 461,396 + -0.3 461,447 + -0.7 461,448 - +0.1 461,605 + EX31_RS02105 0.23 +0.5 461,694 - EX31_RS02105 0.34 -0.7 461,775 + EX31_RS02105 0.45 +1.0 461,779 - EX31_RS02105 0.45 -0.1 461,838 - EX31_RS02105 0.53 -0.7 462,077 + EX31_RS02105 0.84 +0.5 462,077 + EX31_RS02105 0.84 -0.1 462,078 - EX31_RS02105 0.84 -0.3 462,078 - EX31_RS02105 0.84 +0.8 462,174 + -0.6 462,175 - +0.7 462,175 - -1.1 462,176 + +0.2 462,176 + +0.7 462,176 + +0.1 462,176 + +0.6 462,176 + -0.6 462,177 - -1.1 462,177 - +0.2 462,177 - +1.0 462,177 - -0.2 462,177 - +0.5 462,177 - +0.1 462,251 - EX31_RS02110 0.15 +0.8 462,251 - EX31_RS02110 0.15 +0.4 462,260 + EX31_RS02110 0.17 +0.4 462,261 - EX31_RS02110 0.18 -1.9 462,261 - EX31_RS02110 0.18 +0.4
Or see this region's nucleotide sequence