Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01815 and EX31_RS01820 are separated by 53 nucleotides EX31_RS01820 and EX31_RS01825 are separated by 420 nucleotides
EX31_RS01815: EX31_RS01815 - (S)-acetoin forming diacetyl reductase, at 387,753 to 388,532
_RS01815
EX31_RS01820: EX31_RS01820 - helix-turn-helix domain-containing protein, at 388,586 to 389,452
_RS01820
EX31_RS01825: EX31_RS01825 - tannase/feruloyl esterase family alpha/beta hydrolase, at 389,873 to 391,471
_RS01825
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1 at 387.613 kb on + strand at 387.627 kb on - strand at 387.656 kb on - strand at 387.735 kb on + strand at 387.735 kb on + strand at 387.735 kb on + strand at 387.736 kb on - strand at 387.736 kb on - strand at 387.739 kb on + strand at 387.740 kb on - strand at 387.740 kb on - strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.752 kb on + strand at 387.753 kb on - strand at 387.753 kb on - strand at 387.753 kb on - strand at 387.863 kb on + strand, within EX31_RS01815 at 387.914 kb on + strand, within EX31_RS01815 at 388.013 kb on + strand, within EX31_RS01815 at 388.080 kb on + strand, within EX31_RS01815 at 388.083 kb on - strand, within EX31_RS01815 at 388.083 kb on - strand, within EX31_RS01815 at 388.215 kb on + strand, within EX31_RS01815 at 388.215 kb on + strand, within EX31_RS01815 at 388.286 kb on + strand, within EX31_RS01815 at 388.386 kb on - strand, within EX31_RS01815 at 388.406 kb on + strand, within EX31_RS01815 at 388.482 kb on + strand at 388.562 kb on - strand at 388.608 kb on + strand at 388.609 kb on - strand at 388.609 kb on - strand at 388.609 kb on - strand at 388.612 kb on - strand at 388.612 kb on - strand at 388.651 kb on - strand at 388.676 kb on - strand, within EX31_RS01820 at 388.676 kb on - strand, within EX31_RS01820 at 388.676 kb on - strand, within EX31_RS01820 at 388.711 kb on - strand, within EX31_RS01820 at 388.833 kb on + strand, within EX31_RS01820 at 389.124 kb on + strand, within EX31_RS01820 at 389.124 kb on + strand, within EX31_RS01820 at 389.124 kb on + strand, within EX31_RS01820 at 389.129 kb on - strand, within EX31_RS01820 at 389.193 kb on + strand, within EX31_RS01820 at 389.193 kb on + strand, within EX31_RS01820 at 389.194 kb on - strand, within EX31_RS01820 at 389.194 kb on - strand, within EX31_RS01820 at 389.196 kb on + strand, within EX31_RS01820 at 389.197 kb on - strand, within EX31_RS01820 at 389.221 kb on + strand, within EX31_RS01820 at 389.221 kb on + strand, within EX31_RS01820 at 389.274 kb on + strand, within EX31_RS01820 at 389.274 kb on + strand, within EX31_RS01820 at 389.274 kb on + strand, within EX31_RS01820 at 389.275 kb on - strand, within EX31_RS01820 at 389.275 kb on - strand, within EX31_RS01820 at 389.275 kb on - strand, within EX31_RS01820 at 389.278 kb on + strand, within EX31_RS01820 at 389.322 kb on + strand, within EX31_RS01820 at 389.323 kb on - strand, within EX31_RS01820 at 389.323 kb on - strand, within EX31_RS01820 at 389.323 kb on - strand, within EX31_RS01820 at 389.378 kb on + strand at 389.379 kb on - strand at 389.403 kb on - strand at 389.474 kb on + strand at 389.475 kb on - strand at 389.513 kb on + strand at 389.513 kb on + strand at 389.513 kb on + strand at 389.514 kb on - strand at 389.520 kb on + strand at 389.521 kb on - strand at 389.521 kb on - strand at 389.554 kb on - strand at 389.577 kb on - strand at 389.577 kb on - strand at 389.577 kb on - strand at 389.593 kb on - strand at 389.625 kb on + strand at 389.626 kb on - strand at 389.696 kb on + strand at 389.696 kb on + strand at 389.696 kb on + strand at 389.697 kb on - strand at 389.697 kb on - strand at 389.697 kb on - strand at 389.724 kb on - strand at 389.728 kb on - strand at 389.826 kb on + strand at 389.862 kb on + strand at 389.871 kb on + strand at 389.871 kb on + strand at 389.872 kb on - strand at 389.875 kb on - strand at 389.929 kb on - strand at 389.929 kb on - strand at 389.989 kb on + strand at 389.990 kb on - strand at 390.037 kb on + strand, within EX31_RS01825 at 390.050 kb on + strand, within EX31_RS01825 at 390.051 kb on - strand, within EX31_RS01825 at 390.165 kb on + strand, within EX31_RS01825 at 390.166 kb on - strand, within EX31_RS01825 at 390.168 kb on + strand, within EX31_RS01825 at 390.169 kb on - strand, within EX31_RS01825 at 390.174 kb on - strand, within EX31_RS01825 at 390.265 kb on + strand, within EX31_RS01825 at 390.266 kb on - strand, within EX31_RS01825 at 390.323 kb on - strand, within EX31_RS01825 at 390.390 kb on + strand, within EX31_RS01825 at 390.390 kb on + strand, within EX31_RS01825 at 390.391 kb on - strand, within EX31_RS01825 at 390.404 kb on - strand, within EX31_RS01825 at 390.404 kb on - strand, within EX31_RS01825 at 390.409 kb on + strand, within EX31_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 387,613 + -0.1 387,627 - -1.0 387,656 - +0.9 387,735 + +1.0 387,735 + +0.1 387,735 + +0.1 387,736 - +0.9 387,736 - +0.3 387,739 + +0.6 387,740 - -0.8 387,740 - +0.1 387,752 + -0.1 387,752 + -1.5 387,752 + +0.2 387,752 + +0.5 387,752 + +0.5 387,753 - -0.3 387,753 - +0.1 387,753 - -0.8 387,863 + EX31_RS01815 0.14 +0.9 387,914 + EX31_RS01815 0.21 -1.0 388,013 + EX31_RS01815 0.33 +0.4 388,080 + EX31_RS01815 0.42 +1.1 388,083 - EX31_RS01815 0.42 -2.5 388,083 - EX31_RS01815 0.42 +0.8 388,215 + EX31_RS01815 0.59 +1.3 388,215 + EX31_RS01815 0.59 -1.0 388,286 + EX31_RS01815 0.68 +0.7 388,386 - EX31_RS01815 0.81 +0.4 388,406 + EX31_RS01815 0.84 +1.1 388,482 + -0.3 388,562 - +0.7 388,608 + -1.8 388,609 - -0.4 388,609 - +0.4 388,609 - -1.1 388,612 - +1.5 388,612 - -0.3 388,651 - +0.3 388,676 - EX31_RS01820 0.10 -1.5 388,676 - EX31_RS01820 0.10 +0.2 388,676 - EX31_RS01820 0.10 +0.3 388,711 - EX31_RS01820 0.14 -1.6 388,833 + EX31_RS01820 0.28 -0.9 389,124 + EX31_RS01820 0.62 +0.6 389,124 + EX31_RS01820 0.62 -0.3 389,124 + EX31_RS01820 0.62 -0.3 389,129 - EX31_RS01820 0.63 -0.8 389,193 + EX31_RS01820 0.70 -0.3 389,193 + EX31_RS01820 0.70 -1.8 389,194 - EX31_RS01820 0.70 -1.4 389,194 - EX31_RS01820 0.70 -0.3 389,196 + EX31_RS01820 0.70 -0.7 389,197 - EX31_RS01820 0.70 -2.2 389,221 + EX31_RS01820 0.73 -0.4 389,221 + EX31_RS01820 0.73 -0.2 389,274 + EX31_RS01820 0.79 -0.6 389,274 + EX31_RS01820 0.79 -0.4 389,274 + EX31_RS01820 0.79 -1.3 389,275 - EX31_RS01820 0.79 -1.7 389,275 - EX31_RS01820 0.79 -1.1 389,275 - EX31_RS01820 0.79 -0.0 389,278 + EX31_RS01820 0.80 -0.5 389,322 + EX31_RS01820 0.85 -0.4 389,323 - EX31_RS01820 0.85 +0.4 389,323 - EX31_RS01820 0.85 +1.0 389,323 - EX31_RS01820 0.85 +1.3 389,378 + -0.4 389,379 - +0.2 389,403 - -0.1 389,474 + +0.6 389,475 - -1.3 389,513 + -0.1 389,513 + +0.1 389,513 + +1.0 389,514 - -0.2 389,520 + +1.1 389,521 - +0.3 389,521 - -1.5 389,554 - -2.0 389,577 - +0.5 389,577 - +0.7 389,577 - +0.0 389,593 - +0.2 389,625 + -1.0 389,626 - -0.1 389,696 + -0.7 389,696 + +0.7 389,696 + +0.1 389,697 - -0.6 389,697 - +0.7 389,697 - -0.3 389,724 - +0.9 389,728 - +1.2 389,826 + -0.0 389,862 + +1.1 389,871 + -2.0 389,871 + +1.2 389,872 - -0.7 389,875 - +0.4 389,929 - -0.9 389,929 - +0.1 389,989 + +0.4 389,990 - -1.1 390,037 + EX31_RS01825 0.10 -0.7 390,050 + EX31_RS01825 0.11 -2.1 390,051 - EX31_RS01825 0.11 -1.6 390,165 + EX31_RS01825 0.18 +0.7 390,166 - EX31_RS01825 0.18 -0.4 390,168 + EX31_RS01825 0.18 -1.0 390,169 - EX31_RS01825 0.19 -2.0 390,174 - EX31_RS01825 0.19 -1.4 390,265 + EX31_RS01825 0.25 -1.4 390,266 - EX31_RS01825 0.25 +0.0 390,323 - EX31_RS01825 0.28 -1.7 390,390 + EX31_RS01825 0.32 +0.8 390,390 + EX31_RS01825 0.32 +0.2 390,391 - EX31_RS01825 0.32 +0.4 390,404 - EX31_RS01825 0.33 -0.8 390,404 - EX31_RS01825 0.33 -0.8 390,409 + EX31_RS01825 0.34 -0.6
Or see this region's nucleotide sequence