Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01125 and EX31_RS01130 are separated by 60 nucleotides EX31_RS01130 and EX31_RS01135 are separated by 73 nucleotides
EX31_RS01125: EX31_RS01125 - alpha/beta hydrolase, at 245,703 to 246,626
_RS01125
EX31_RS01130: EX31_RS01130 - TetR/AcrR family transcriptional regulator, at 246,687 to 247,304
_RS01130
EX31_RS01135: EX31_RS01135 - SDR family oxidoreductase, at 247,378 to 248,055
_RS01135
Position (kb) 246
247
248 Strain fitness (log2 ratio) -1
0
1
2 at 245.720 kb on + strand at 245.721 kb on - strand at 245.721 kb on - strand at 245.721 kb on - strand at 245.721 kb on - strand at 245.721 kb on - strand at 245.880 kb on + strand, within EX31_RS01125 at 245.898 kb on - strand, within EX31_RS01125 at 245.938 kb on + strand, within EX31_RS01125 at 246.213 kb on + strand, within EX31_RS01125 at 246.214 kb on - strand, within EX31_RS01125 at 246.226 kb on + strand, within EX31_RS01125 at 246.226 kb on + strand, within EX31_RS01125 at 246.226 kb on + strand, within EX31_RS01125 at 246.226 kb on + strand, within EX31_RS01125 at 246.445 kb on + strand, within EX31_RS01125 at 246.511 kb on + strand, within EX31_RS01125 at 246.512 kb on - strand, within EX31_RS01125 at 246.512 kb on - strand, within EX31_RS01125 at 246.512 kb on - strand, within EX31_RS01125 at 246.596 kb on + strand at 246.597 kb on - strand at 246.642 kb on + strand at 246.642 kb on + strand at 246.642 kb on + strand at 246.643 kb on - strand at 246.643 kb on - strand at 246.643 kb on - strand at 246.702 kb on - strand at 246.781 kb on - strand, within EX31_RS01130 at 246.873 kb on - strand, within EX31_RS01130 at 246.882 kb on - strand, within EX31_RS01130 at 246.882 kb on - strand, within EX31_RS01130 at 246.885 kb on - strand, within EX31_RS01130 at 246.928 kb on - strand, within EX31_RS01130 at 246.928 kb on - strand, within EX31_RS01130 at 246.995 kb on - strand, within EX31_RS01130 at 247.092 kb on + strand, within EX31_RS01130 at 247.093 kb on - strand, within EX31_RS01130 at 247.093 kb on - strand, within EX31_RS01130 at 247.133 kb on - strand, within EX31_RS01130 at 247.137 kb on - strand, within EX31_RS01130 at 247.137 kb on - strand, within EX31_RS01130 at 247.379 kb on + strand at 247.517 kb on - strand, within EX31_RS01135 at 247.617 kb on - strand, within EX31_RS01135 at 247.712 kb on - strand, within EX31_RS01135 at 247.746 kb on + strand, within EX31_RS01135 at 247.791 kb on + strand, within EX31_RS01135 at 247.814 kb on - strand, within EX31_RS01135 at 247.891 kb on - strand, within EX31_RS01135 at 248.055 kb on + strand at 248.068 kb on - strand at 248.139 kb on - strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 245,720 + +0.3 245,721 - -0.1 245,721 - -0.4 245,721 - -1.7 245,721 - -0.1 245,721 - -0.9 245,880 + EX31_RS01125 0.19 +0.1 245,898 - EX31_RS01125 0.21 +0.1 245,938 + EX31_RS01125 0.25 -0.6 246,213 + EX31_RS01125 0.55 -0.7 246,214 - EX31_RS01125 0.55 -0.5 246,226 + EX31_RS01125 0.57 +0.4 246,226 + EX31_RS01125 0.57 +1.1 246,226 + EX31_RS01125 0.57 -0.1 246,226 + EX31_RS01125 0.57 -0.1 246,445 + EX31_RS01125 0.80 -0.2 246,511 + EX31_RS01125 0.87 -0.9 246,512 - EX31_RS01125 0.88 +0.2 246,512 - EX31_RS01125 0.88 -1.5 246,512 - EX31_RS01125 0.88 -0.5 246,596 + +0.5 246,597 - -0.5 246,642 + +0.1 246,642 + -0.3 246,642 + -1.1 246,643 - -0.2 246,643 - -0.2 246,643 - +0.3 246,702 - +1.2 246,781 - EX31_RS01130 0.15 -1.3 246,873 - EX31_RS01130 0.30 +0.0 246,882 - EX31_RS01130 0.32 +0.5 246,882 - EX31_RS01130 0.32 +1.0 246,885 - EX31_RS01130 0.32 -0.1 246,928 - EX31_RS01130 0.39 +0.6 246,928 - EX31_RS01130 0.39 +0.8 246,995 - EX31_RS01130 0.50 +1.8 247,092 + EX31_RS01130 0.66 -1.3 247,093 - EX31_RS01130 0.66 +0.1 247,093 - EX31_RS01130 0.66 +0.5 247,133 - EX31_RS01130 0.72 +0.4 247,137 - EX31_RS01130 0.73 +0.5 247,137 - EX31_RS01130 0.73 +1.1 247,379 + -0.0 247,517 - EX31_RS01135 0.21 +0.3 247,617 - EX31_RS01135 0.35 +0.4 247,712 - EX31_RS01135 0.49 +1.0 247,746 + EX31_RS01135 0.54 +0.3 247,791 + EX31_RS01135 0.61 +0.1 247,814 - EX31_RS01135 0.64 -0.4 247,891 - EX31_RS01135 0.76 +0.5 248,055 + -0.2 248,068 - +1.1 248,139 - -0.4 248,202 + -1.2 248,202 + -0.2 248,247 - -0.7
Or see this region's nucleotide sequence