Strain Fitness in Rahnella sp. WP5 around EX31_RS00700

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00695 and EX31_RS00700 are separated by 18 nucleotidesEX31_RS00700 and EX31_RS00705 overlap by 4 nucleotides EX31_RS00695: EX31_RS00695 - ABC transporter permease, at 147,364 to 148,302 _RS00695 EX31_RS00700: EX31_RS00700 - ABC transporter permease, at 148,321 to 149,136 _RS00700 EX31_RS00705: EX31_RS00705 - ABC transporter ATP-binding protein, at 149,133 to 150,722 _RS00705 Position (kb) 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 147.734 kb on + strand, within EX31_RS00695at 147.735 kb on - strand, within EX31_RS00695at 147.741 kb on + strand, within EX31_RS00695at 147.741 kb on + strand, within EX31_RS00695at 147.855 kb on + strand, within EX31_RS00695at 147.855 kb on + strand, within EX31_RS00695at 147.856 kb on - strand, within EX31_RS00695at 147.868 kb on - strand, within EX31_RS00695at 147.940 kb on - strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 148.047 kb on - strand, within EX31_RS00695at 148.047 kb on - strand, within EX31_RS00695at 148.133 kb on + strand, within EX31_RS00695at 148.133 kb on + strand, within EX31_RS00695at 148.133 kb on + strand, within EX31_RS00695at 148.134 kb on - strand, within EX31_RS00695at 148.134 kb on - strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.160 kb on - strand, within EX31_RS00695at 148.160 kb on - strand, within EX31_RS00695at 148.160 kb on - strand, within EX31_RS00695at 148.231 kb on + strandat 148.232 kb on - strandat 148.232 kb on - strandat 148.232 kb on - strandat 148.309 kb on - strandat 148.346 kb on + strandat 148.346 kb on + strandat 148.374 kb on + strandat 148.479 kb on + strand, within EX31_RS00700at 148.578 kb on + strand, within EX31_RS00700at 148.579 kb on - strand, within EX31_RS00700at 148.579 kb on - strand, within EX31_RS00700at 148.956 kb on + strand, within EX31_RS00700at 149.146 kb on + strandat 149.146 kb on + strandat 149.146 kb on + strandat 149.146 kb on + strandat 149.147 kb on - strandat 149.147 kb on - strandat 149.147 kb on - strandat 149.166 kb on + strandat 149.339 kb on + strand, within EX31_RS00705at 149.340 kb on - strand, within EX31_RS00705at 149.412 kb on + strand, within EX31_RS00705at 149.412 kb on + strand, within EX31_RS00705at 149.412 kb on + strand, within EX31_RS00705at 149.472 kb on - strand, within EX31_RS00705at 149.472 kb on - strand, within EX31_RS00705at 149.492 kb on + strand, within EX31_RS00705at 149.492 kb on + strand, within EX31_RS00705at 149.493 kb on - strand, within EX31_RS00705at 149.500 kb on - strand, within EX31_RS00705at 149.574 kb on + strand, within EX31_RS00705at 149.760 kb on + strand, within EX31_RS00705at 149.760 kb on + strand, within EX31_RS00705at 149.761 kb on - strand, within EX31_RS00705at 149.761 kb on - strand, within EX31_RS00705at 149.794 kb on + strand, within EX31_RS00705at 149.813 kb on - strand, within EX31_RS00705at 149.826 kb on - strand, within EX31_RS00705at 149.880 kb on + strand, within EX31_RS00705at 149.881 kb on - strand, within EX31_RS00705at 149.881 kb on - strand, within EX31_RS00705at 150.069 kb on - strand, within EX31_RS00705at 150.136 kb on + strand, within EX31_RS00705at 150.136 kb on + strand, within EX31_RS00705at 150.136 kb on + strand, within EX31_RS00705

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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147,734 + EX31_RS00695 0.39 -0.2
147,735 - EX31_RS00695 0.40 -1.9
147,741 + EX31_RS00695 0.40 -0.5
147,741 + EX31_RS00695 0.40 +0.9
147,855 + EX31_RS00695 0.52 -3.0
147,855 + EX31_RS00695 0.52 +0.3
147,856 - EX31_RS00695 0.52 -0.9
147,868 - EX31_RS00695 0.54 -0.8
147,940 - EX31_RS00695 0.61 -1.3
147,988 + EX31_RS00695 0.66 +0.1
147,988 + EX31_RS00695 0.66 +0.9
147,988 + EX31_RS00695 0.66 +1.2
147,988 + EX31_RS00695 0.66 -1.3
147,989 - EX31_RS00695 0.67 +1.0
147,989 - EX31_RS00695 0.67 -0.1
147,989 - EX31_RS00695 0.67 -2.1
147,989 - EX31_RS00695 0.67 -1.2
148,047 - EX31_RS00695 0.73 +0.3
148,047 - EX31_RS00695 0.73 -0.1
148,133 + EX31_RS00695 0.82 +1.0
148,133 + EX31_RS00695 0.82 -0.5
148,133 + EX31_RS00695 0.82 +0.9
148,134 - EX31_RS00695 0.82 -0.6
148,134 - EX31_RS00695 0.82 +0.1
148,159 + EX31_RS00695 0.85 -0.9
148,159 + EX31_RS00695 0.85 -0.2
148,159 + EX31_RS00695 0.85 +0.2
148,159 + EX31_RS00695 0.85 -0.3
148,159 + EX31_RS00695 0.85 +1.0
148,159 + EX31_RS00695 0.85 +0.4
148,159 + EX31_RS00695 0.85 -0.0
148,159 + EX31_RS00695 0.85 +0.5
148,160 - EX31_RS00695 0.85 -0.8
148,160 - EX31_RS00695 0.85 -0.4
148,160 - EX31_RS00695 0.85 -0.1
148,231 + -0.1
148,232 - -0.7
148,232 - -1.1
148,232 - +0.3
148,309 - -1.6
148,346 + +1.0
148,346 + -0.2
148,374 + +0.6
148,479 + EX31_RS00700 0.19 +0.3
148,578 + EX31_RS00700 0.31 +0.5
148,579 - EX31_RS00700 0.32 +1.8
148,579 - EX31_RS00700 0.32 +0.5
148,956 + EX31_RS00700 0.78 +0.1
149,146 + +0.7
149,146 + -0.3
149,146 + +0.8
149,146 + +0.4
149,147 - +0.7
149,147 - -0.7
149,147 - +0.0
149,166 + -1.1
149,339 + EX31_RS00705 0.13 +1.3
149,340 - EX31_RS00705 0.13 -1.9
149,412 + EX31_RS00705 0.18 -0.8
149,412 + EX31_RS00705 0.18 -2.0
149,412 + EX31_RS00705 0.18 -1.2
149,472 - EX31_RS00705 0.21 -0.4
149,472 - EX31_RS00705 0.21 -0.3
149,492 + EX31_RS00705 0.23 -0.0
149,492 + EX31_RS00705 0.23 +0.7
149,493 - EX31_RS00705 0.23 -0.1
149,500 - EX31_RS00705 0.23 +0.2
149,574 + EX31_RS00705 0.28 -0.7
149,760 + EX31_RS00705 0.39 +0.0
149,760 + EX31_RS00705 0.39 +0.6
149,761 - EX31_RS00705 0.39 +0.7
149,761 - EX31_RS00705 0.39 +0.1
149,794 + EX31_RS00705 0.42 +0.5
149,813 - EX31_RS00705 0.43 -0.4
149,826 - EX31_RS00705 0.44 -0.1
149,880 + EX31_RS00705 0.47 -0.3
149,881 - EX31_RS00705 0.47 +0.8
149,881 - EX31_RS00705 0.47 +0.5
150,069 - EX31_RS00705 0.59 -0.5
150,136 + EX31_RS00705 0.63 -0.5
150,136 + EX31_RS00705 0.63 +0.0
150,136 + EX31_RS00705 0.63 -0.1

Or see this region's nucleotide sequence