Strain Fitness in Rahnella sp. WP5 around EX31_RS25500

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
15,799	+				-0.1
15,799	+				+0.9
15,799	+				-0.9
15,800	-				-0.3
15,800	-				-1.3
15,832	-				-0.6
15,851	+				-0.9
15,851	+				-0.4
15,851	+				-1.2
15,851	+				+0.6
15,852	-				-1.0
15,852	-				+0.2
15,852	-				+0.5
15,852	-				+0.5
15,852	-				+0.1
15,852	-				-0.2
15,852	-				+0.2
15,852	-				-0.4
15,852	-				-0.0
15,852	-				+0.1
15,901	+				-1.6
15,902	-				+0.4
15,922	-				-0.6
15,922	-				-1.3
15,922	-				-0.1
15,922	-				+0.1
15,930	+				+0.3
15,930	+				-0.2
15,931	-				-0.0
15,931	-				-0.8
15,936	-				-0.1
15,936	-				+0.6
15,936	-				-0.3
15,936	-				-0.1
15,936	-				-0.8
15,944	-				+0.8
15,944	-				-0.8
15,958	-				+0.1
15,958	-				+0.6
15,958	-				+0.2
15,967	+				-0.2
15,972	+				-1.4
15,972	+				-0.4
15,972	+				+0.3
15,972	+				-0.4
15,973	-				+0.5
15,973	-				+0.9
15,973	-				-0.0
15,973	-				+0.2
15,977	+				-0.8
15,977	+				+0.3
15,978	-				+0.4
15,978	-				-0.0
15,978	-				-0.1
15,978	-				-0.1
16,006	+				+0.9
16,007	-				-0.4
16,007	-				-0.4
16,111	+				+0.2
16,112	-				-0.8
16,112	-				-0.8
16,112	-				+0.1
16,116	+				-0.3
16,116	+				-0.3
16,117	-				-0.9
16,133	+				+0.8
16,133	+				-1.1
16,133	+				-0.5
16,134	-				+0.0
16,134	-				-0.0
16,134	-				-2.4
16,248	+				-0.5
16,270	+				+0.7
16,271	-				-0.2
16,271	-				+0.6
16,271	-				+0.2
16,306	+				+0.7
16,306	+				+0.3
16,306	+				-0.3
16,306	+				+0.8
16,306	+				-0.9
16,306	+				-0.0
16,307	-				-0.4
16,307	-				+0.8
16,307	-				+0.0
16,307	-				+1.8
16,308	+				-0.9
16,341	+				+1.0
16,350	-		EX31_RS25855	0.11	+0.4
16,350	-		EX31_RS25855	0.11	+0.8
16,358	+		EX31_RS25855	0.12	+0.0
16,383	+		EX31_RS25855	0.18	+0.1
16,383	+		EX31_RS25855	0.18	-0.2
16,383	+		EX31_RS25855	0.18	-0.8
16,383	+		EX31_RS25855	0.18	-0.6
16,392	+		EX31_RS25855	0.21	+0.1
16,392	+		EX31_RS25855	0.21	+0.2
16,393	-		EX31_RS25855	0.21	-0.5
16,405	+		EX31_RS25855	0.24	-0.7
16,428	-		EX31_RS25855	0.29	+0.1
16,443	+		EX31_RS25855	0.33	+1.1
16,444	-		EX31_RS25855	0.33	-0.4
16,444	-		EX31_RS25855	0.33	+0.6
16,519	-		EX31_RS25855	0.51	-0.0
16,562	+		EX31_RS25855	0.61	-2.4
16,562	+		EX31_RS25855	0.61	-0.1
16,562	+		EX31_RS25855	0.61	-0.4
16,562	+		EX31_RS25855	0.61	-1.8
16,562	+		EX31_RS25855	0.61	-0.8
16,562	+		EX31_RS25855	0.61	+0.0
16,562	+		EX31_RS25855	0.61	-1.8
16,562	+		EX31_RS25855	0.61	+0.5
16,562	+		EX31_RS25855	0.61	+1.0
16,563	-		EX31_RS25855	0.61	-1.0
16,606	+		EX31_RS25855	0.72	+0.3
16,606	+		EX31_RS25855	0.72	+1.6
16,606	+		EX31_RS25855	0.72	-0.5
16,606	+		EX31_RS25855	0.72	-1.2
16,606	+		EX31_RS25855	0.72	+0.3
16,606	+		EX31_RS25855	0.72	+0.7
16,606	+		EX31_RS25855	0.72	-0.2
16,606	+		EX31_RS25855	0.72	-1.8
16,606	+		EX31_RS25855	0.72	-1.0
16,607	-		EX31_RS25855	0.72	+0.2
16,607	-		EX31_RS25855	0.72	+0.3
16,607	-		EX31_RS25855	0.72	-0.4
16,607	-		EX31_RS25855	0.72	-0.4
16,607	-		EX31_RS25855	0.72	+0.4
16,607	-		EX31_RS25855	0.72	-0.3
16,607	-		EX31_RS25855	0.72	+0.2
16,607	-		EX31_RS25855	0.72	+0.6
16,612	+		EX31_RS25855	0.73	+0.4
16,612	+		EX31_RS25855	0.73	+0.4
16,612	+		EX31_RS25855	0.73	+0.5
16,612	+		EX31_RS25855	0.73	-0.4
16,612	+		EX31_RS25855	0.73	+0.2
16,612	+		EX31_RS25855	0.73	-0.3
16,612	+		EX31_RS25855	0.73	-1.6
16,613	-		EX31_RS25855	0.73	+0.0
16,613	-		EX31_RS25855	0.73	+0.2
16,613	-		EX31_RS25855	0.73	+0.1
16,613	-		EX31_RS25855	0.73	-0.2
16,613	-		EX31_RS25855	0.73	-0.3
16,613	-		EX31_RS25855	0.73	+0.1
16,613	-		EX31_RS25855	0.73	+0.1
16,613	-		EX31_RS25855	0.73	-1.2
16,613	-		EX31_RS25855	0.73	+0.4
16,613	-		EX31_RS25855	0.73	-0.5
16,671	-		EX31_RS25855	0.87	-1.6
16,671	-		EX31_RS25855	0.87	+0.0
16,678	+		EX31_RS25855	0.89	+0.2
16,678	+		EX31_RS25855	0.89	+0.3
16,679	-		EX31_RS25855	0.89	-1.7
16,679	-		EX31_RS25855	0.89	-0.8
16,679	-		EX31_RS25855	0.89	-1.8
16,679	-		EX31_RS25855	0.89	+0.7
16,683	-				+0.5
16,696	+				+0.6
16,696	+				+0.3
16,729	+				-0.7
16,729	+				+0.1
16,730	-				-0.2
16,730	-				-0.1
16,730	-				+0.2
16,730	-				+1.1
16,752	+				+0.1
16,752	+				-0.6
16,753	-				+0.3
16,754	+				-0.6
16,754	+				-1.8
16,755	-				+0.1
16,755	-				+0.7
16,755	-				-1.3
16,755	-				+0.8
16,755	-				-2.1
16,755	-				-0.9
16,820	+		EX31_RS25500	0.11	-0.0
16,820	+		EX31_RS25500	0.11	+0.3
16,820	+		EX31_RS25500	0.11	-1.5
16,820	+		EX31_RS25500	0.11	+0.9
16,820	+		EX31_RS25500	0.11	-0.5
16,821	-		EX31_RS25500	0.12	-0.1
16,821	-		EX31_RS25500	0.12	+0.4
16,880	+		EX31_RS25500	0.37	-0.2
16,880	+		EX31_RS25500	0.37	-0.2
16,880	+		EX31_RS25500	0.37	-0.6
16,881	-		EX31_RS25500	0.37	-0.3
16,884	+		EX31_RS25500	0.38	+0.7
16,884	+		EX31_RS25500	0.38	-0.5
16,884	+		EX31_RS25500	0.38	-0.6
16,884	+		EX31_RS25500	0.38	-1.0
16,885	-		EX31_RS25500	0.39	-0.9
16,885	-		EX31_RS25500	0.39	-0.7
16,947	+		EX31_RS25500	0.65	+0.3
16,982	+		EX31_RS25500	0.80	-0.7
16,982	+		EX31_RS25500	0.80	-0.5
16,982	+		EX31_RS25500	0.80	-0.9
16,984	+		EX31_RS25500	0.81	-0.3
16,984	+		EX31_RS25500	0.81	-1.0
16,985	-		EX31_RS25500	0.82	-0.6
17,012	-				+2.0
17,012	-				-0.7
17,026	-				+0.2
17,052	+				+0.1
17,052	+				-0.1
17,052	+				+1.1
17,052	+				-0.5
17,052	+				+0.0
17,052	+				-0.4
17,053	-				-0.7
17,053	-				+1.8
17,053	-				+0.9
17,053	-				+0.3
17,053	-				-0.2
17,053	-				-0.7
17,053	-				-0.6
17,053	-				+0.3
17,053	-				+0.0
17,053	-				-0.4
17,056	+				+0.1
17,056	+				-0.8
17,056	+				+0.4
17,057	-				-0.4
17,057	-				-0.3
17,057	-				+0.7
17,152	+				+2.3
17,289	+				-0.3
17,319	+				+1.7
17,320	-				+1.1
17,364	+				-0.9
17,365	-				-1.5
17,502	-				-0.0
17,504	-				+0.8
17,517	-				+0.3
17,561	+				+0.2
17,600	-				-0.5
17,739	+				-1.3