Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22045 and EX31_RS22050 are separated by 33 nucleotides EX31_RS22050 and EX31_RS22055 overlap by 8 nucleotides EX31_RS22055 and EX31_RS22060 are separated by 270 nucleotides
EX31_RS22045: EX31_RS22045 - phosphate regulon sensor histidine kinase PhoR, at 156,173 to 157,492
_RS22045
EX31_RS22050: EX31_RS22050 - helix-turn-helix domain-containing protein, at 157,526 to 157,858
_RS22050
EX31_RS22055: EX31_RS22055 - type II toxin-antitoxin system RelE/ParE family toxin, at 157,851 to 158,246
_RS22055
EX31_RS22060: EX31_RS22060 - cobalamin-independent methionine synthase II family protein, at 158,517 to 159,620
_RS22060
Position (kb) 157
158 Strain fitness (log2 ratio) -2
-1
0
1 at 156.529 kb on + strand, within EX31_RS22045 at 156.529 kb on + strand, within EX31_RS22045 at 156.530 kb on - strand, within EX31_RS22045 at 156.598 kb on + strand, within EX31_RS22045 at 156.598 kb on + strand, within EX31_RS22045 at 156.598 kb on + strand, within EX31_RS22045 at 156.599 kb on - strand, within EX31_RS22045 at 156.599 kb on - strand, within EX31_RS22045 at 156.599 kb on - strand, within EX31_RS22045 at 156.599 kb on - strand, within EX31_RS22045 at 156.599 kb on - strand, within EX31_RS22045 at 156.673 kb on - strand, within EX31_RS22045 at 156.673 kb on - strand, within EX31_RS22045 at 156.682 kb on + strand, within EX31_RS22045 at 156.682 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.692 kb on + strand, within EX31_RS22045 at 156.693 kb on - strand, within EX31_RS22045 at 156.693 kb on - strand, within EX31_RS22045 at 156.693 kb on - strand, within EX31_RS22045 at 156.693 kb on - strand, within EX31_RS22045 at 156.693 kb on - strand, within EX31_RS22045 at 156.717 kb on - strand, within EX31_RS22045 at 156.787 kb on + strand, within EX31_RS22045 at 156.788 kb on - strand, within EX31_RS22045 at 156.835 kb on - strand, within EX31_RS22045 at 156.892 kb on + strand, within EX31_RS22045 at 156.892 kb on + strand, within EX31_RS22045 at 156.986 kb on - strand, within EX31_RS22045 at 157.054 kb on - strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.151 kb on + strand, within EX31_RS22045 at 157.152 kb on - strand, within EX31_RS22045 at 157.152 kb on - strand, within EX31_RS22045 at 157.152 kb on - strand, within EX31_RS22045 at 157.152 kb on - strand, within EX31_RS22045 at 157.152 kb on - strand, within EX31_RS22045 at 157.152 kb on - strand, within EX31_RS22045 at 157.154 kb on - strand, within EX31_RS22045 at 157.423 kb on + strand at 157.423 kb on + strand at 157.429 kb on + strand at 157.482 kb on + strand at 157.483 kb on - strand at 157.569 kb on - strand, within EX31_RS22050 at 157.569 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.637 kb on - strand, within EX31_RS22050 at 157.859 kb on + strand at 157.875 kb on - strand at 157.875 kb on - strand at 157.875 kb on - strand at 157.875 kb on - strand at 157.879 kb on - strand at 157.947 kb on - strand, within EX31_RS22055 at 157.947 kb on - strand, within EX31_RS22055 at 157.947 kb on - strand, within EX31_RS22055 at 157.947 kb on - strand, within EX31_RS22055 at 157.948 kb on + strand, within EX31_RS22055 at 157.948 kb on + strand, within EX31_RS22055 at 157.948 kb on + strand, within EX31_RS22055 at 157.949 kb on - strand, within EX31_RS22055 at 157.949 kb on - strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.950 kb on + strand, within EX31_RS22055 at 157.951 kb on - strand, within EX31_RS22055 at 157.951 kb on - strand, within EX31_RS22055 at 157.951 kb on - strand, within EX31_RS22055 at 157.998 kb on - strand, within EX31_RS22055 at 158.020 kb on + strand, within EX31_RS22055 at 158.021 kb on - strand, within EX31_RS22055 at 158.030 kb on + strand, within EX31_RS22055 at 158.108 kb on - strand, within EX31_RS22055 at 158.222 kb on + strand at 158.231 kb on + strand at 158.231 kb on + strand at 158.232 kb on - strand at 158.235 kb on + strand at 158.235 kb on + strand at 158.236 kb on - strand at 158.272 kb on - strand at 158.307 kb on + strand at 158.403 kb on + strand at 158.404 kb on - strand at 158.404 kb on - strand at 158.404 kb on - strand at 158.404 kb on - strand at 158.453 kb on + strand at 158.453 kb on + strand at 158.453 kb on + strand at 158.454 kb on - strand at 158.454 kb on - strand at 158.454 kb on - strand at 158.458 kb on - strand at 158.461 kb on + strand at 158.462 kb on - strand at 158.501 kb on + strand at 158.501 kb on + strand at 158.501 kb on + strand at 158.501 kb on + strand at 158.502 kb on - strand at 158.504 kb on + strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.505 kb on - strand at 158.525 kb on + strand at 158.525 kb on + strand at 158.525 kb on + strand at 158.525 kb on + strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.526 kb on - strand at 158.773 kb on - strand, within EX31_RS22060 at 158.773 kb on - strand, within EX31_RS22060 at 158.806 kb on + strand, within EX31_RS22060 at 158.806 kb on + strand, within EX31_RS22060 at 158.813 kb on + strand, within EX31_RS22060 at 158.814 kb on - strand, within EX31_RS22060 at 158.814 kb on - strand, within EX31_RS22060 at 158.814 kb on - strand, within EX31_RS22060 at 158.828 kb on + strand, within EX31_RS22060 at 158.829 kb on - strand, within EX31_RS22060
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 156,529 + EX31_RS22045 0.27 -1.4 156,529 + EX31_RS22045 0.27 +0.2 156,530 - EX31_RS22045 0.27 -1.3 156,598 + EX31_RS22045 0.32 -0.4 156,598 + EX31_RS22045 0.32 -0.8 156,598 + EX31_RS22045 0.32 +1.0 156,599 - EX31_RS22045 0.32 -0.6 156,599 - EX31_RS22045 0.32 +0.5 156,599 - EX31_RS22045 0.32 -0.8 156,599 - EX31_RS22045 0.32 -1.3 156,599 - EX31_RS22045 0.32 -0.4 156,673 - EX31_RS22045 0.38 -0.2 156,673 - EX31_RS22045 0.38 -0.2 156,682 + EX31_RS22045 0.39 +0.0 156,682 + EX31_RS22045 0.39 +0.2 156,692 + EX31_RS22045 0.39 -0.0 156,692 + EX31_RS22045 0.39 +0.1 156,692 + EX31_RS22045 0.39 +0.3 156,692 + EX31_RS22045 0.39 -0.5 156,692 + EX31_RS22045 0.39 -1.2 156,692 + EX31_RS22045 0.39 -1.6 156,692 + EX31_RS22045 0.39 -0.6 156,692 + EX31_RS22045 0.39 -0.6 156,692 + EX31_RS22045 0.39 +0.3 156,692 + EX31_RS22045 0.39 -0.7 156,693 - EX31_RS22045 0.39 +0.4 156,693 - EX31_RS22045 0.39 -0.7 156,693 - EX31_RS22045 0.39 -0.1 156,693 - EX31_RS22045 0.39 -1.2 156,693 - EX31_RS22045 0.39 -0.5 156,717 - EX31_RS22045 0.41 -0.2 156,787 + EX31_RS22045 0.47 +0.4 156,788 - EX31_RS22045 0.47 -0.0 156,835 - EX31_RS22045 0.50 +1.7 156,892 + EX31_RS22045 0.54 -1.3 156,892 + EX31_RS22045 0.54 -0.4 156,986 - EX31_RS22045 0.62 -1.2 157,054 - EX31_RS22045 0.67 +1.5 157,151 + EX31_RS22045 0.74 +0.1 157,151 + EX31_RS22045 0.74 +1.6 157,151 + EX31_RS22045 0.74 +1.1 157,151 + EX31_RS22045 0.74 +0.4 157,151 + EX31_RS22045 0.74 -0.6 157,151 + EX31_RS22045 0.74 -0.4 157,151 + EX31_RS22045 0.74 -0.1 157,151 + EX31_RS22045 0.74 -0.2 157,151 + EX31_RS22045 0.74 +0.1 157,152 - EX31_RS22045 0.74 +1.1 157,152 - EX31_RS22045 0.74 -0.0 157,152 - EX31_RS22045 0.74 -0.2 157,152 - EX31_RS22045 0.74 +1.1 157,152 - EX31_RS22045 0.74 -0.0 157,152 - EX31_RS22045 0.74 -0.1 157,154 - EX31_RS22045 0.74 -0.2 157,423 + +0.4 157,423 + +1.2 157,429 + +0.0 157,482 + +0.2 157,483 - +0.6 157,569 - EX31_RS22050 0.13 +1.6 157,569 - EX31_RS22050 0.13 +0.5 157,637 - EX31_RS22050 0.33 +0.4 157,637 - EX31_RS22050 0.33 +0.6 157,637 - EX31_RS22050 0.33 +1.0 157,637 - EX31_RS22050 0.33 +0.9 157,637 - EX31_RS22050 0.33 +0.7 157,637 - EX31_RS22050 0.33 +1.2 157,859 + +0.7 157,875 - -0.5 157,875 - +0.3 157,875 - -0.6 157,875 - -0.2 157,879 - +1.0 157,947 - EX31_RS22055 0.24 -0.1 157,947 - EX31_RS22055 0.24 +0.1 157,947 - EX31_RS22055 0.24 -0.3 157,947 - EX31_RS22055 0.24 -0.4 157,948 + EX31_RS22055 0.24 -0.8 157,948 + EX31_RS22055 0.24 -0.2 157,948 + EX31_RS22055 0.24 +0.8 157,949 - EX31_RS22055 0.25 +0.1 157,949 - EX31_RS22055 0.25 -0.4 157,950 + EX31_RS22055 0.25 +0.9 157,950 + EX31_RS22055 0.25 -1.3 157,950 + EX31_RS22055 0.25 +0.3 157,950 + EX31_RS22055 0.25 +0.0 157,950 + EX31_RS22055 0.25 -0.1 157,950 + EX31_RS22055 0.25 -2.0 157,951 - EX31_RS22055 0.25 -1.7 157,951 - EX31_RS22055 0.25 +0.0 157,951 - EX31_RS22055 0.25 +0.4 157,998 - EX31_RS22055 0.37 +1.6 158,020 + EX31_RS22055 0.43 -0.3 158,021 - EX31_RS22055 0.43 +1.0 158,030 + EX31_RS22055 0.45 +0.6 158,108 - EX31_RS22055 0.65 +0.4 158,222 + +1.0 158,231 + +0.5 158,231 + -0.5 158,232 - -0.4 158,235 + -0.5 158,235 + -0.9 158,236 - -0.2 158,272 - +0.4 158,307 + +0.8 158,403 + +0.7 158,404 - -1.5 158,404 - +0.7 158,404 - +0.4 158,404 - +0.4 158,453 + +0.8 158,453 + +1.3 158,453 + -0.8 158,454 - +0.7 158,454 - -0.3 158,454 - -0.2 158,458 - +0.5 158,461 + -0.1 158,462 - +0.3 158,501 + -0.4 158,501 + +0.1 158,501 + -0.1 158,501 + -0.4 158,502 - +0.4 158,504 + +0.2 158,505 - -1.3 158,505 - -0.3 158,505 - +0.2 158,505 - +0.3 158,505 - -1.9 158,525 + -0.8 158,525 + -2.1 158,525 + +0.8 158,525 + -0.1 158,526 - -0.7 158,526 - -0.4 158,526 - +0.5 158,526 - -0.3 158,526 - -0.3 158,526 - -0.2 158,526 - -0.5 158,526 - +0.6 158,526 - +0.0 158,526 - +1.0 158,526 - +0.1 158,773 - EX31_RS22060 0.23 -0.3 158,773 - EX31_RS22060 0.23 -0.4 158,806 + EX31_RS22060 0.26 +1.1 158,806 + EX31_RS22060 0.26 +0.3 158,813 + EX31_RS22060 0.27 -0.0 158,814 - EX31_RS22060 0.27 -0.7 158,814 - EX31_RS22060 0.27 -1.1 158,814 - EX31_RS22060 0.27 -0.5 158,828 + EX31_RS22060 0.28 +1.2 158,829 - EX31_RS22060 0.28 -1.9
Or see this region's nucleotide sequence