Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14890 and EX31_RS14895 are separated by 3 nucleotides EX31_RS14895 and EX31_RS14900 overlap by 4 nucleotides EX31_RS14900 and EX31_RS14905 are separated by 12 nucleotides
EX31_RS14890: EX31_RS14890 - carbohydrate ABC transporter substrate-binding protein, at 71,379 to 72,641
_RS14890
EX31_RS14895: EX31_RS14895 - sugar ABC transporter permease, at 72,645 to 73,514
_RS14895
EX31_RS14900: EX31_RS14900 - carbohydrate ABC transporter permease, at 73,511 to 74,392
_RS14900
EX31_RS14905: EX31_RS14905 - DUF3459 domain-containing protein, at 74,405 to 75,955
_RS14905
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.518 kb on + strand at 72.578 kb on + strand at 72.639 kb on + strand at 72.639 kb on + strand at 72.639 kb on + strand at 72.640 kb on - strand at 72.640 kb on - strand at 72.640 kb on - strand at 72.640 kb on - strand at 72.640 kb on - strand at 72.693 kb on + strand at 72.724 kb on - strand at 72.756 kb on - strand, within EX31_RS14895 at 72.846 kb on + strand, within EX31_RS14895 at 72.846 kb on + strand, within EX31_RS14895 at 72.846 kb on + strand, within EX31_RS14895 at 72.849 kb on - strand, within EX31_RS14895 at 72.870 kb on + strand, within EX31_RS14895 at 72.871 kb on - strand, within EX31_RS14895 at 72.873 kb on + strand, within EX31_RS14895 at 72.873 kb on + strand, within EX31_RS14895 at 72.928 kb on + strand, within EX31_RS14895 at 73.041 kb on - strand, within EX31_RS14895 at 73.143 kb on + strand, within EX31_RS14895 at 73.147 kb on - strand, within EX31_RS14895 at 73.175 kb on + strand, within EX31_RS14895 at 73.178 kb on + strand, within EX31_RS14895 at 73.238 kb on - strand, within EX31_RS14895 at 73.245 kb on - strand, within EX31_RS14895 at 73.245 kb on - strand, within EX31_RS14895 at 73.259 kb on + strand, within EX31_RS14895 at 73.259 kb on + strand, within EX31_RS14895 at 73.260 kb on - strand, within EX31_RS14895 at 73.260 kb on - strand, within EX31_RS14895 at 73.273 kb on + strand, within EX31_RS14895 at 73.273 kb on + strand, within EX31_RS14895 at 73.274 kb on - strand, within EX31_RS14895 at 73.274 kb on - strand, within EX31_RS14895 at 73.304 kb on - strand, within EX31_RS14895 at 73.313 kb on + strand, within EX31_RS14895 at 73.314 kb on - strand, within EX31_RS14895 at 73.330 kb on - strand, within EX31_RS14895 at 73.330 kb on - strand, within EX31_RS14895 at 73.386 kb on + strand, within EX31_RS14895 at 73.386 kb on + strand, within EX31_RS14895 at 73.386 kb on + strand, within EX31_RS14895 at 73.386 kb on + strand, within EX31_RS14895 at 73.386 kb on + strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.387 kb on - strand, within EX31_RS14895 at 73.428 kb on - strand at 73.428 kb on - strand at 73.439 kb on + strand at 73.510 kb on + strand at 73.510 kb on + strand at 73.510 kb on + strand at 73.510 kb on + strand at 73.511 kb on - strand at 73.511 kb on - strand at 73.555 kb on - strand at 73.632 kb on + strand, within EX31_RS14900 at 73.633 kb on - strand, within EX31_RS14900 at 73.634 kb on + strand, within EX31_RS14900 at 73.640 kb on + strand, within EX31_RS14900 at 73.641 kb on - strand, within EX31_RS14900 at 73.641 kb on - strand, within EX31_RS14900 at 73.685 kb on + strand, within EX31_RS14900 at 73.686 kb on - strand, within EX31_RS14900 at 73.686 kb on - strand, within EX31_RS14900 at 73.687 kb on + strand, within EX31_RS14900 at 73.724 kb on - strand, within EX31_RS14900 at 73.727 kb on + strand, within EX31_RS14900 at 73.795 kb on - strand, within EX31_RS14900 at 73.795 kb on - strand, within EX31_RS14900 at 73.819 kb on - strand, within EX31_RS14900 at 73.819 kb on - strand, within EX31_RS14900 at 73.873 kb on + strand, within EX31_RS14900 at 73.978 kb on + strand, within EX31_RS14900 at 73.986 kb on - strand, within EX31_RS14900 at 74.051 kb on - strand, within EX31_RS14900 at 74.069 kb on + strand, within EX31_RS14900 at 74.069 kb on + strand, within EX31_RS14900 at 74.069 kb on + strand, within EX31_RS14900 at 74.070 kb on - strand, within EX31_RS14900 at 74.070 kb on - strand, within EX31_RS14900 at 74.072 kb on - strand, within EX31_RS14900 at 74.072 kb on - strand, within EX31_RS14900 at 74.072 kb on - strand, within EX31_RS14900 at 74.088 kb on + strand, within EX31_RS14900 at 74.088 kb on + strand, within EX31_RS14900 at 74.089 kb on - strand, within EX31_RS14900 at 74.112 kb on + strand, within EX31_RS14900 at 74.266 kb on + strand, within EX31_RS14900 at 74.267 kb on - strand, within EX31_RS14900 at 74.267 kb on - strand, within EX31_RS14900 at 74.273 kb on + strand, within EX31_RS14900 at 74.274 kb on - strand, within EX31_RS14900 at 74.282 kb on + strand, within EX31_RS14900 at 74.282 kb on + strand, within EX31_RS14900 at 74.282 kb on + strand, within EX31_RS14900 at 74.282 kb on + strand, within EX31_RS14900 at 74.282 kb on + strand, within EX31_RS14900 at 74.282 kb on + strand, within EX31_RS14900 at 74.283 kb on - strand, within EX31_RS14900 at 74.283 kb on - strand, within EX31_RS14900 at 74.283 kb on - strand, within EX31_RS14900 at 74.283 kb on - strand, within EX31_RS14900 at 74.386 kb on + strand at 74.386 kb on + strand at 74.386 kb on + strand at 74.386 kb on + strand at 74.386 kb on + strand at 74.387 kb on - strand at 74.387 kb on - strand at 74.390 kb on + strand at 74.391 kb on - strand at 74.391 kb on - strand at 74.442 kb on - strand at 74.450 kb on + strand at 74.450 kb on + strand at 74.450 kb on + strand at 74.450 kb on + strand at 74.450 kb on + strand at 74.450 kb on + strand at 74.450 kb on + strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.451 kb on - strand at 74.488 kb on - strand at 74.506 kb on - strand at 74.506 kb on - strand at 74.512 kb on + strand at 74.513 kb on - strand at 74.522 kb on + strand at 74.522 kb on + strand at 74.523 kb on - strand at 74.567 kb on + strand, within EX31_RS14905 at 74.567 kb on + strand, within EX31_RS14905 at 74.567 kb on + strand, within EX31_RS14905 at 74.568 kb on - strand, within EX31_RS14905 at 74.640 kb on + strand, within EX31_RS14905 at 74.640 kb on + strand, within EX31_RS14905 at 74.640 kb on + strand, within EX31_RS14905 at 74.640 kb on + strand, within EX31_RS14905 at 74.640 kb on + strand, within EX31_RS14905 at 74.640 kb on + strand, within EX31_RS14905 at 74.640 kb on + strand, within EX31_RS14905 at 74.641 kb on - strand, within EX31_RS14905 at 74.641 kb on - strand, within EX31_RS14905 at 74.641 kb on - strand, within EX31_RS14905 at 74.641 kb on - strand, within EX31_RS14905 at 74.641 kb on - strand, within EX31_RS14905 at 74.684 kb on - strand, within EX31_RS14905 at 74.711 kb on - strand, within EX31_RS14905 at 74.867 kb on + strand, within EX31_RS14905 at 74.867 kb on + strand, within EX31_RS14905 at 74.867 kb on + strand, within EX31_RS14905 at 74.868 kb on - strand, within EX31_RS14905 at 74.868 kb on - strand, within EX31_RS14905 at 74.868 kb on - strand, within EX31_RS14905 at 74.868 kb on - strand, within EX31_RS14905 at 74.870 kb on + strand, within EX31_RS14905 at 74.871 kb on - strand, within EX31_RS14905 at 74.871 kb on - strand, within EX31_RS14905 at 74.895 kb on + strand, within EX31_RS14905 at 74.895 kb on + strand, within EX31_RS14905 at 74.896 kb on - strand, within EX31_RS14905 at 74.896 kb on - strand, within EX31_RS14905 at 75.191 kb on + strand, within EX31_RS14905 at 75.191 kb on + strand, within EX31_RS14905 at 75.192 kb on - strand, within EX31_RS14905 at 75.192 kb on - strand, within EX31_RS14905 at 75.257 kb on - strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.337 kb on + strand, within EX31_RS14905 at 75.338 kb on - strand, within EX31_RS14905 at 75.338 kb on - strand, within EX31_RS14905 at 75.338 kb on - strand, within EX31_RS14905 at 75.338 kb on - strand, within EX31_RS14905 at 75.338 kb on - strand, within EX31_RS14905 at 75.338 kb on - strand, within EX31_RS14905 at 75.338 kb on - strand, within EX31_RS14905 at 75.380 kb on - strand, within EX31_RS14905
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 72,518 + -0.3 72,578 + -0.9 72,639 + +0.1 72,639 + +0.0 72,639 + +0.5 72,640 - -0.1 72,640 - -0.2 72,640 - +0.4 72,640 - -0.8 72,640 - +0.3 72,693 + +0.3 72,724 - +0.2 72,756 - EX31_RS14895 0.13 +0.9 72,846 + EX31_RS14895 0.23 -1.2 72,846 + EX31_RS14895 0.23 +0.6 72,846 + EX31_RS14895 0.23 -0.9 72,849 - EX31_RS14895 0.23 +0.6 72,870 + EX31_RS14895 0.26 -0.9 72,871 - EX31_RS14895 0.26 +0.0 72,873 + EX31_RS14895 0.26 -1.7 72,873 + EX31_RS14895 0.26 -0.7 72,928 + EX31_RS14895 0.33 -0.3 73,041 - EX31_RS14895 0.46 -0.4 73,143 + EX31_RS14895 0.57 -1.7 73,147 - EX31_RS14895 0.58 -0.8 73,175 + EX31_RS14895 0.61 -0.8 73,178 + EX31_RS14895 0.61 -0.5 73,238 - EX31_RS14895 0.68 -0.5 73,245 - EX31_RS14895 0.69 -0.5 73,245 - EX31_RS14895 0.69 +0.4 73,259 + EX31_RS14895 0.71 -0.6 73,259 + EX31_RS14895 0.71 -0.6 73,260 - EX31_RS14895 0.71 -0.0 73,260 - EX31_RS14895 0.71 -0.5 73,273 + EX31_RS14895 0.72 +0.7 73,273 + EX31_RS14895 0.72 -0.4 73,274 - EX31_RS14895 0.72 -0.8 73,274 - EX31_RS14895 0.72 -0.2 73,304 - EX31_RS14895 0.76 +0.2 73,313 + EX31_RS14895 0.77 -0.1 73,314 - EX31_RS14895 0.77 -0.5 73,330 - EX31_RS14895 0.79 -0.2 73,330 - EX31_RS14895 0.79 -2.2 73,386 + EX31_RS14895 0.85 -0.3 73,386 + EX31_RS14895 0.85 +0.2 73,386 + EX31_RS14895 0.85 -0.7 73,386 + EX31_RS14895 0.85 +0.4 73,386 + EX31_RS14895 0.85 -0.8 73,387 - EX31_RS14895 0.85 -0.3 73,387 - EX31_RS14895 0.85 -0.0 73,387 - EX31_RS14895 0.85 +0.5 73,387 - EX31_RS14895 0.85 -0.2 73,387 - EX31_RS14895 0.85 -0.2 73,387 - EX31_RS14895 0.85 +0.8 73,387 - EX31_RS14895 0.85 -0.8 73,387 - EX31_RS14895 0.85 +0.2 73,387 - EX31_RS14895 0.85 +0.1 73,387 - EX31_RS14895 0.85 -0.8 73,387 - EX31_RS14895 0.85 -0.9 73,428 - -0.0 73,428 - -0.3 73,439 + -0.0 73,510 + +0.3 73,510 + +0.8 73,510 + +0.1 73,510 + -0.1 73,511 - +0.3 73,511 - +0.6 73,555 - -0.2 73,632 + EX31_RS14900 0.14 -0.7 73,633 - EX31_RS14900 0.14 -1.4 73,634 + EX31_RS14900 0.14 -0.0 73,640 + EX31_RS14900 0.15 -0.5 73,641 - EX31_RS14900 0.15 -0.8 73,641 - EX31_RS14900 0.15 -1.4 73,685 + EX31_RS14900 0.20 -0.8 73,686 - EX31_RS14900 0.20 +0.1 73,686 - EX31_RS14900 0.20 +0.2 73,687 + EX31_RS14900 0.20 -0.7 73,724 - EX31_RS14900 0.24 +0.2 73,727 + EX31_RS14900 0.24 -0.0 73,795 - EX31_RS14900 0.32 +0.1 73,795 - EX31_RS14900 0.32 +0.1 73,819 - EX31_RS14900 0.35 -0.4 73,819 - EX31_RS14900 0.35 -0.7 73,873 + EX31_RS14900 0.41 -0.1 73,978 + EX31_RS14900 0.53 -0.6 73,986 - EX31_RS14900 0.54 +0.4 74,051 - EX31_RS14900 0.61 +0.4 74,069 + EX31_RS14900 0.63 -1.2 74,069 + EX31_RS14900 0.63 -0.1 74,069 + EX31_RS14900 0.63 -0.3 74,070 - EX31_RS14900 0.63 -0.2 74,070 - EX31_RS14900 0.63 +0.1 74,072 - EX31_RS14900 0.64 -1.0 74,072 - EX31_RS14900 0.64 +0.0 74,072 - EX31_RS14900 0.64 -0.7 74,088 + EX31_RS14900 0.65 -0.7 74,088 + EX31_RS14900 0.65 -0.4 74,089 - EX31_RS14900 0.66 +0.2 74,112 + EX31_RS14900 0.68 -0.6 74,266 + EX31_RS14900 0.86 -0.7 74,267 - EX31_RS14900 0.86 +0.2 74,267 - EX31_RS14900 0.86 -0.2 74,273 + EX31_RS14900 0.86 +0.0 74,274 - EX31_RS14900 0.87 -1.1 74,282 + EX31_RS14900 0.87 +0.3 74,282 + EX31_RS14900 0.87 -1.6 74,282 + EX31_RS14900 0.87 +0.4 74,282 + EX31_RS14900 0.87 -1.0 74,282 + EX31_RS14900 0.87 -0.2 74,282 + EX31_RS14900 0.87 -0.6 74,283 - EX31_RS14900 0.88 +0.4 74,283 - EX31_RS14900 0.88 -0.6 74,283 - EX31_RS14900 0.88 +0.0 74,283 - EX31_RS14900 0.88 +0.3 74,386 + -0.7 74,386 + -0.6 74,386 + -0.6 74,386 + +0.7 74,386 + +0.0 74,387 - -1.1 74,387 - -0.6 74,390 + +0.2 74,391 - -0.4 74,391 - -0.4 74,442 - +0.1 74,450 + -0.2 74,450 + -0.3 74,450 + -0.0 74,450 + +0.5 74,450 + -0.0 74,450 + +0.3 74,450 + -0.4 74,451 - -1.9 74,451 - +0.6 74,451 - +0.1 74,451 - +0.5 74,451 - -0.2 74,451 - +0.3 74,451 - -0.3 74,451 - +1.8 74,451 - +0.1 74,451 - +0.2 74,488 - +0.0 74,506 - +0.0 74,506 - -0.5 74,512 + -0.3 74,513 - -0.6 74,522 + +0.6 74,522 + +0.2 74,523 - -0.4 74,567 + EX31_RS14905 0.10 -1.0 74,567 + EX31_RS14905 0.10 +0.3 74,567 + EX31_RS14905 0.10 -0.1 74,568 - EX31_RS14905 0.11 +0.5 74,640 + EX31_RS14905 0.15 -0.1 74,640 + EX31_RS14905 0.15 +0.2 74,640 + EX31_RS14905 0.15 -0.1 74,640 + EX31_RS14905 0.15 -0.7 74,640 + EX31_RS14905 0.15 -0.7 74,640 + EX31_RS14905 0.15 -0.1 74,640 + EX31_RS14905 0.15 -0.2 74,641 - EX31_RS14905 0.15 -0.5 74,641 - EX31_RS14905 0.15 +0.2 74,641 - EX31_RS14905 0.15 -1.6 74,641 - EX31_RS14905 0.15 -0.4 74,641 - EX31_RS14905 0.15 -0.0 74,684 - EX31_RS14905 0.18 +0.1 74,711 - EX31_RS14905 0.20 -0.3 74,867 + EX31_RS14905 0.30 -0.8 74,867 + EX31_RS14905 0.30 -0.5 74,867 + EX31_RS14905 0.30 +0.5 74,868 - EX31_RS14905 0.30 +0.6 74,868 - EX31_RS14905 0.30 +0.3 74,868 - EX31_RS14905 0.30 +0.8 74,868 - EX31_RS14905 0.30 +1.1 74,870 + EX31_RS14905 0.30 -1.3 74,871 - EX31_RS14905 0.30 +0.0 74,871 - EX31_RS14905 0.30 +0.0 74,895 + EX31_RS14905 0.32 +0.2 74,895 + EX31_RS14905 0.32 -0.6 74,896 - EX31_RS14905 0.32 +0.2 74,896 - EX31_RS14905 0.32 +0.0 75,191 + EX31_RS14905 0.51 +0.3 75,191 + EX31_RS14905 0.51 +0.3 75,192 - EX31_RS14905 0.51 +0.3 75,192 - EX31_RS14905 0.51 -0.1 75,257 - EX31_RS14905 0.55 -0.3 75,337 + EX31_RS14905 0.60 -0.9 75,337 + EX31_RS14905 0.60 +0.2 75,337 + EX31_RS14905 0.60 -0.3 75,337 + EX31_RS14905 0.60 -0.1 75,337 + EX31_RS14905 0.60 -0.3 75,337 + EX31_RS14905 0.60 -1.3 75,337 + EX31_RS14905 0.60 -1.2 75,337 + EX31_RS14905 0.60 +0.1 75,337 + EX31_RS14905 0.60 -0.7 75,337 + EX31_RS14905 0.60 +0.0 75,338 - EX31_RS14905 0.60 -0.1 75,338 - EX31_RS14905 0.60 +0.1 75,338 - EX31_RS14905 0.60 -0.2 75,338 - EX31_RS14905 0.60 +0.9 75,338 - EX31_RS14905 0.60 +0.2 75,338 - EX31_RS14905 0.60 -0.1 75,338 - EX31_RS14905 0.60 -0.2 75,380 - EX31_RS14905 0.63 +0.2
Or see this region's nucleotide sequence