Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14560 and EX31_RS14565 are separated by 189 nucleotides EX31_RS14565 and EX31_RS14570 are separated by 11 nucleotides
EX31_RS14560: EX31_RS14560 - Xaa-Pro dipeptidase, at 3,217 to 4,548
_RS14560
EX31_RS14565: EX31_RS14565 - fatty acid oxidation complex subunit alpha FadB, at 4,738 to 6,930
_RS14565
EX31_RS14570: EX31_RS14570 - acetyl-CoA C-acyltransferase FadA, at 6,942 to 8,105
_RS14570
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.764 kb on + strand, within EX31_RS14560 at 3.764 kb on + strand, within EX31_RS14560 at 3.765 kb on - strand, within EX31_RS14560 at 3.765 kb on - strand, within EX31_RS14560 at 3.765 kb on - strand, within EX31_RS14560 at 3.768 kb on + strand, within EX31_RS14560 at 3.768 kb on + strand, within EX31_RS14560 at 3.769 kb on - strand, within EX31_RS14560 at 3.788 kb on + strand, within EX31_RS14560 at 3.789 kb on - strand, within EX31_RS14560 at 3.795 kb on + strand, within EX31_RS14560 at 3.797 kb on + strand, within EX31_RS14560 at 3.797 kb on + strand, within EX31_RS14560 at 3.797 kb on + strand, within EX31_RS14560 at 3.797 kb on + strand, within EX31_RS14560 at 3.798 kb on - strand, within EX31_RS14560 at 3.798 kb on - strand, within EX31_RS14560 at 3.798 kb on - strand, within EX31_RS14560 at 3.798 kb on - strand, within EX31_RS14560 at 3.859 kb on - strand, within EX31_RS14560 at 3.863 kb on + strand, within EX31_RS14560 at 3.863 kb on + strand, within EX31_RS14560 at 3.863 kb on + strand, within EX31_RS14560 at 3.863 kb on + strand, within EX31_RS14560 at 3.863 kb on + strand, within EX31_RS14560 at 3.863 kb on + strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.864 kb on - strand, within EX31_RS14560 at 3.871 kb on + strand, within EX31_RS14560 at 3.908 kb on + strand, within EX31_RS14560 at 3.909 kb on - strand, within EX31_RS14560 at 3.922 kb on - strand, within EX31_RS14560 at 3.947 kb on + strand, within EX31_RS14560 at 3.961 kb on - strand, within EX31_RS14560 at 3.961 kb on - strand, within EX31_RS14560 at 4.041 kb on + strand, within EX31_RS14560 at 4.056 kb on - strand, within EX31_RS14560 at 4.056 kb on - strand, within EX31_RS14560 at 4.065 kb on + strand, within EX31_RS14560 at 4.066 kb on - strand, within EX31_RS14560 at 4.068 kb on - strand, within EX31_RS14560 at 4.079 kb on + strand, within EX31_RS14560 at 4.080 kb on - strand, within EX31_RS14560 at 4.080 kb on - strand, within EX31_RS14560 at 4.157 kb on + strand, within EX31_RS14560 at 4.166 kb on + strand, within EX31_RS14560 at 4.167 kb on - strand, within EX31_RS14560 at 4.167 kb on - strand, within EX31_RS14560 at 4.301 kb on + strand, within EX31_RS14560 at 4.302 kb on - strand, within EX31_RS14560 at 4.406 kb on + strand, within EX31_RS14560 at 4.407 kb on - strand, within EX31_RS14560 at 4.515 kb on + strand at 4.516 kb on - strand at 4.526 kb on + strand at 4.527 kb on - strand at 4.533 kb on + strand at 4.534 kb on - strand at 4.590 kb on - strand at 4.590 kb on - strand at 4.590 kb on - strand at 4.590 kb on - strand at 4.590 kb on - strand at 4.611 kb on + strand at 4.611 kb on + strand at 4.611 kb on + strand at 4.611 kb on + strand at 4.611 kb on + strand at 4.611 kb on + strand at 4.611 kb on + strand at 4.612 kb on - strand at 4.744 kb on + strand at 4.744 kb on + strand at 4.760 kb on + strand at 4.760 kb on + strand at 4.760 kb on + strand at 4.760 kb on + strand at 4.760 kb on + strand at 4.760 kb on + strand at 4.760 kb on + strand at 4.761 kb on - strand at 4.761 kb on - strand at 4.761 kb on - strand at 4.761 kb on - strand at 4.761 kb on - strand at 4.761 kb on - strand at 4.871 kb on + strand at 4.872 kb on - strand at 4.872 kb on - strand at 4.930 kb on - strand at 5.162 kb on + strand, within EX31_RS14565 at 5.169 kb on + strand, within EX31_RS14565 at 5.170 kb on - strand, within EX31_RS14565 at 5.170 kb on - strand, within EX31_RS14565 at 5.170 kb on - strand, within EX31_RS14565 at 5.214 kb on + strand, within EX31_RS14565 at 5.215 kb on - strand, within EX31_RS14565 at 5.254 kb on - strand, within EX31_RS14565 at 5.373 kb on + strand, within EX31_RS14565 at 5.373 kb on + strand, within EX31_RS14565 at 5.374 kb on - strand, within EX31_RS14565 at 5.374 kb on - strand, within EX31_RS14565 at 5.389 kb on - strand, within EX31_RS14565 at 5.451 kb on + strand, within EX31_RS14565 at 5.451 kb on + strand, within EX31_RS14565 at 5.451 kb on + strand, within EX31_RS14565 at 5.451 kb on + strand, within EX31_RS14565 at 5.452 kb on - strand, within EX31_RS14565 at 5.452 kb on - strand, within EX31_RS14565 at 5.452 kb on - strand, within EX31_RS14565 at 5.452 kb on - strand, within EX31_RS14565 at 5.479 kb on + strand, within EX31_RS14565 at 5.510 kb on + strand, within EX31_RS14565 at 5.610 kb on + strand, within EX31_RS14565 at 5.690 kb on + strand, within EX31_RS14565 at 5.706 kb on + strand, within EX31_RS14565 at 5.747 kb on + strand, within EX31_RS14565 at 5.766 kb on + strand, within EX31_RS14565 at 5.766 kb on + strand, within EX31_RS14565 at 5.767 kb on - strand, within EX31_RS14565 at 5.862 kb on + strand, within EX31_RS14565 at 5.897 kb on - strand, within EX31_RS14565 at 6.081 kb on + strand, within EX31_RS14565 at 6.081 kb on + strand, within EX31_RS14565 at 6.108 kb on + strand, within EX31_RS14565 at 6.108 kb on + strand, within EX31_RS14565 at 6.108 kb on + strand, within EX31_RS14565 at 6.109 kb on - strand, within EX31_RS14565 at 6.109 kb on - strand, within EX31_RS14565 at 6.109 kb on - strand, within EX31_RS14565 at 6.109 kb on - strand, within EX31_RS14565 at 6.192 kb on + strand, within EX31_RS14565 at 6.193 kb on - strand, within EX31_RS14565 at 6.193 kb on - strand, within EX31_RS14565 at 6.202 kb on - strand, within EX31_RS14565 at 6.254 kb on - strand, within EX31_RS14565 at 6.276 kb on - strand, within EX31_RS14565 at 6.352 kb on + strand, within EX31_RS14565 at 6.352 kb on + strand, within EX31_RS14565 at 6.352 kb on + strand, within EX31_RS14565 at 6.353 kb on - strand, within EX31_RS14565 at 6.353 kb on - strand, within EX31_RS14565 at 6.439 kb on + strand, within EX31_RS14565 at 6.682 kb on - strand, within EX31_RS14565 at 6.682 kb on - strand, within EX31_RS14565 at 6.719 kb on - strand at 6.719 kb on - strand at 6.760 kb on + strand at 6.787 kb on + strand at 6.788 kb on - strand at 6.808 kb on + strand at 6.809 kb on - strand at 6.809 kb on - strand at 6.809 kb on - strand at 6.829 kb on + strand at 6.829 kb on + strand at 6.829 kb on + strand at 6.928 kb on + strand at 6.928 kb on + strand at 6.928 kb on + strand at 6.929 kb on - strand at 6.929 kb on - strand at 6.929 kb on - strand at 6.929 kb on - strand at 6.929 kb on - strand at 6.929 kb on - strand at 6.952 kb on + strand at 6.953 kb on - strand at 7.088 kb on + strand, within EX31_RS14570 at 7.097 kb on + strand, within EX31_RS14570 at 7.097 kb on + strand, within EX31_RS14570 at 7.097 kb on + strand, within EX31_RS14570 at 7.097 kb on + strand, within EX31_RS14570 at 7.097 kb on + strand, within EX31_RS14570 at 7.098 kb on - strand, within EX31_RS14570 at 7.098 kb on - strand, within EX31_RS14570 at 7.098 kb on - strand, within EX31_RS14570 at 7.098 kb on - strand, within EX31_RS14570 at 7.098 kb on - strand, within EX31_RS14570 at 7.101 kb on + strand, within EX31_RS14570 at 7.101 kb on + strand, within EX31_RS14570 at 7.256 kb on + strand, within EX31_RS14570 at 7.257 kb on - strand, within EX31_RS14570 at 7.257 kb on - strand, within EX31_RS14570 at 7.302 kb on - strand, within EX31_RS14570 at 7.302 kb on - strand, within EX31_RS14570 at 7.302 kb on - strand, within EX31_RS14570 at 7.302 kb on - strand, within EX31_RS14570 at 7.552 kb on - strand, within EX31_RS14570 at 7.552 kb on - strand, within EX31_RS14570 at 7.606 kb on + strand, within EX31_RS14570 at 7.778 kb on + strand, within EX31_RS14570 at 7.922 kb on + strand, within EX31_RS14570 at 7.922 kb on + strand, within EX31_RS14570 at 7.923 kb on - strand, within EX31_RS14570
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 3,764 + EX31_RS14560 0.41 -0.5 3,764 + EX31_RS14560 0.41 -1.4 3,765 - EX31_RS14560 0.41 -0.3 3,765 - EX31_RS14560 0.41 +0.3 3,765 - EX31_RS14560 0.41 -0.5 3,768 + EX31_RS14560 0.41 -0.6 3,768 + EX31_RS14560 0.41 -1.3 3,769 - EX31_RS14560 0.41 -0.4 3,788 + EX31_RS14560 0.43 +0.9 3,789 - EX31_RS14560 0.43 -0.3 3,795 + EX31_RS14560 0.43 +0.5 3,797 + EX31_RS14560 0.44 -1.1 3,797 + EX31_RS14560 0.44 -0.5 3,797 + EX31_RS14560 0.44 -0.6 3,797 + EX31_RS14560 0.44 -2.1 3,798 - EX31_RS14560 0.44 -0.1 3,798 - EX31_RS14560 0.44 +0.2 3,798 - EX31_RS14560 0.44 -0.4 3,798 - EX31_RS14560 0.44 -0.2 3,859 - EX31_RS14560 0.48 +0.3 3,863 + EX31_RS14560 0.48 -1.0 3,863 + EX31_RS14560 0.48 +0.2 3,863 + EX31_RS14560 0.48 -1.3 3,863 + EX31_RS14560 0.48 -0.1 3,863 + EX31_RS14560 0.48 +0.2 3,863 + EX31_RS14560 0.48 +0.7 3,864 - EX31_RS14560 0.49 -1.9 3,864 - EX31_RS14560 0.49 -0.1 3,864 - EX31_RS14560 0.49 +0.3 3,864 - EX31_RS14560 0.49 -0.2 3,864 - EX31_RS14560 0.49 +0.4 3,864 - EX31_RS14560 0.49 -0.4 3,864 - EX31_RS14560 0.49 +0.4 3,864 - EX31_RS14560 0.49 -0.5 3,864 - EX31_RS14560 0.49 +0.1 3,871 + EX31_RS14560 0.49 -0.5 3,908 + EX31_RS14560 0.52 -0.2 3,909 - EX31_RS14560 0.52 -0.1 3,922 - EX31_RS14560 0.53 -2.1 3,947 + EX31_RS14560 0.55 -1.4 3,961 - EX31_RS14560 0.56 -0.6 3,961 - EX31_RS14560 0.56 +0.3 4,041 + EX31_RS14560 0.62 -0.9 4,056 - EX31_RS14560 0.63 -0.3 4,056 - EX31_RS14560 0.63 -0.9 4,065 + EX31_RS14560 0.64 -1.0 4,066 - EX31_RS14560 0.64 -0.1 4,068 - EX31_RS14560 0.64 -3.0 4,079 + EX31_RS14560 0.65 -0.9 4,080 - EX31_RS14560 0.65 -0.2 4,080 - EX31_RS14560 0.65 +0.1 4,157 + EX31_RS14560 0.71 +0.4 4,166 + EX31_RS14560 0.71 +0.1 4,167 - EX31_RS14560 0.71 +0.3 4,167 - EX31_RS14560 0.71 +0.6 4,301 + EX31_RS14560 0.81 -0.6 4,302 - EX31_RS14560 0.81 -0.6 4,406 + EX31_RS14560 0.89 -0.2 4,407 - EX31_RS14560 0.89 +0.1 4,515 + -0.3 4,516 - -2.3 4,526 + +0.1 4,527 - +0.1 4,533 + -1.6 4,534 - -0.0 4,590 - -0.6 4,590 - +0.3 4,590 - +0.2 4,590 - +3.0 4,590 - +0.1 4,611 + -0.3 4,611 + +0.1 4,611 + -0.9 4,611 + +0.9 4,611 + +0.3 4,611 + -0.2 4,611 + -1.1 4,612 - -0.5 4,744 + +0.5 4,744 + +0.4 4,760 + -0.1 4,760 + +0.2 4,760 + -0.1 4,760 + +0.3 4,760 + +0.8 4,760 + +0.2 4,760 + -0.2 4,761 - +0.1 4,761 - +0.1 4,761 - +0.2 4,761 - -0.3 4,761 - +0.5 4,761 - -0.3 4,871 + -0.4 4,872 - -0.0 4,872 - -0.5 4,930 - +0.5 5,162 + EX31_RS14565 0.19 -1.1 5,169 + EX31_RS14565 0.20 +0.7 5,170 - EX31_RS14565 0.20 -0.0 5,170 - EX31_RS14565 0.20 +0.1 5,170 - EX31_RS14565 0.20 +0.1 5,214 + EX31_RS14565 0.22 -0.6 5,215 - EX31_RS14565 0.22 -0.3 5,254 - EX31_RS14565 0.24 +0.7 5,373 + EX31_RS14565 0.29 -0.9 5,373 + EX31_RS14565 0.29 -0.1 5,374 - EX31_RS14565 0.29 +0.2 5,374 - EX31_RS14565 0.29 -1.6 5,389 - EX31_RS14565 0.30 +0.1 5,451 + EX31_RS14565 0.33 -0.2 5,451 + EX31_RS14565 0.33 -0.8 5,451 + EX31_RS14565 0.33 +0.4 5,451 + EX31_RS14565 0.33 -0.6 5,452 - EX31_RS14565 0.33 -0.7 5,452 - EX31_RS14565 0.33 +0.7 5,452 - EX31_RS14565 0.33 -0.2 5,452 - EX31_RS14565 0.33 +0.0 5,479 + EX31_RS14565 0.34 -0.1 5,510 + EX31_RS14565 0.35 +0.4 5,610 + EX31_RS14565 0.40 -0.2 5,690 + EX31_RS14565 0.43 -0.6 5,706 + EX31_RS14565 0.44 +0.4 5,747 + EX31_RS14565 0.46 -1.0 5,766 + EX31_RS14565 0.47 +0.0 5,766 + EX31_RS14565 0.47 -0.2 5,767 - EX31_RS14565 0.47 -1.7 5,862 + EX31_RS14565 0.51 -0.1 5,897 - EX31_RS14565 0.53 -0.2 6,081 + EX31_RS14565 0.61 +0.2 6,081 + EX31_RS14565 0.61 -0.2 6,108 + EX31_RS14565 0.62 +0.3 6,108 + EX31_RS14565 0.62 +0.2 6,108 + EX31_RS14565 0.62 +0.3 6,109 - EX31_RS14565 0.63 -0.0 6,109 - EX31_RS14565 0.63 +0.1 6,109 - EX31_RS14565 0.63 -0.6 6,109 - EX31_RS14565 0.63 +0.6 6,192 + EX31_RS14565 0.66 -0.5 6,193 - EX31_RS14565 0.66 -0.9 6,193 - EX31_RS14565 0.66 +0.4 6,202 - EX31_RS14565 0.67 -0.1 6,254 - EX31_RS14565 0.69 -0.1 6,276 - EX31_RS14565 0.70 -0.2 6,352 + EX31_RS14565 0.74 +0.2 6,352 + EX31_RS14565 0.74 +0.5 6,352 + EX31_RS14565 0.74 +0.3 6,353 - EX31_RS14565 0.74 +0.1 6,353 - EX31_RS14565 0.74 +0.2 6,439 + EX31_RS14565 0.78 -0.4 6,682 - EX31_RS14565 0.89 -0.5 6,682 - EX31_RS14565 0.89 -0.4 6,719 - +1.2 6,719 - -0.0 6,760 + +0.7 6,787 + +0.0 6,788 - +0.0 6,808 + -0.4 6,809 - +0.2 6,809 - -0.4 6,809 - +0.2 6,829 + -0.0 6,829 + +0.4 6,829 + +0.3 6,928 + +0.4 6,928 + -0.1 6,928 + +0.8 6,929 - -0.3 6,929 - -0.5 6,929 - -0.5 6,929 - -0.6 6,929 - -0.5 6,929 - +0.7 6,952 + -0.4 6,953 - -1.0 7,088 + EX31_RS14570 0.13 +0.3 7,097 + EX31_RS14570 0.13 -0.6 7,097 + EX31_RS14570 0.13 +1.2 7,097 + EX31_RS14570 0.13 +0.2 7,097 + EX31_RS14570 0.13 +0.1 7,097 + EX31_RS14570 0.13 +0.6 7,098 - EX31_RS14570 0.13 -0.4 7,098 - EX31_RS14570 0.13 -0.3 7,098 - EX31_RS14570 0.13 +0.4 7,098 - EX31_RS14570 0.13 -0.3 7,098 - EX31_RS14570 0.13 -0.2 7,101 + EX31_RS14570 0.14 -0.1 7,101 + EX31_RS14570 0.14 -0.2 7,256 + EX31_RS14570 0.27 +0.5 7,257 - EX31_RS14570 0.27 -1.0 7,257 - EX31_RS14570 0.27 -0.8 7,302 - EX31_RS14570 0.31 -0.2 7,302 - EX31_RS14570 0.31 -0.0 7,302 - EX31_RS14570 0.31 -0.6 7,302 - EX31_RS14570 0.31 -0.3 7,552 - EX31_RS14570 0.52 -2.3 7,552 - EX31_RS14570 0.52 +0.2 7,606 + EX31_RS14570 0.57 -0.0 7,778 + EX31_RS14570 0.72 +0.0 7,922 + EX31_RS14570 0.84 +0.2 7,922 + EX31_RS14570 0.84 +1.0 7,923 - EX31_RS14570 0.84 -0.3
Or see this region's nucleotide sequence