Strain Fitness in Rahnella sp. WP5 around EX31_RS12135

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
93,385	+		EX31_RS12125	0.58	+0.0
93,405	+		EX31_RS12125	0.61	+0.4
93,406	-		EX31_RS12125	0.61	+0.2
93,496	+		EX31_RS12125	0.71	-0.0
93,496	+		EX31_RS12125	0.71	-0.2
93,497	-		EX31_RS12125	0.71	-1.7
93,497	-		EX31_RS12125	0.71	-1.4
93,497	-		EX31_RS12125	0.71	-0.4
93,497	-		EX31_RS12125	0.71	-0.1
93,497	-		EX31_RS12125	0.71	-0.2
93,541	+		EX31_RS12125	0.76	+0.0
93,558	+		EX31_RS12125	0.78	-0.5
93,558	+		EX31_RS12125	0.78	-0.1
93,558	+		EX31_RS12125	0.78	+0.8
93,559	-		EX31_RS12125	0.78	+0.1
93,559	-		EX31_RS12125	0.78	-0.0
93,587	+		EX31_RS12125	0.81	-0.2
93,587	+		EX31_RS12125	0.81	-0.5
93,587	+		EX31_RS12125	0.81	-1.9
93,588	-		EX31_RS12125	0.81	-0.0
93,729	+				+0.5
93,730	-				+0.5
93,730	-				+0.5
93,730	-				-0.0
93,734	+				+0.0
93,734	+				-0.6
93,734	+				-1.3
93,735	-				+0.2
93,735	-				-0.5
93,735	-				-0.7
93,739	+				+0.7
93,739	+				-0.8
93,739	+				-1.5
93,740	-				+0.1
93,784	+				-0.1
93,791	+				-0.3
93,792	-				+0.1
93,853	+				-0.1
93,853	+				-1.2
93,853	+				-0.7
93,853	+				-0.6
93,853	+				+0.3
93,854	-				-0.2
93,854	-				+0.0
93,854	-				+1.0
93,854	-				+0.4
93,854	-				+0.2
93,854	-				+0.1
93,854	-				+0.7
93,855	+				+0.9
93,855	+				-1.5
93,855	+				+0.0
93,968	+		EX31_RS12130	0.17	-0.1
93,968	+		EX31_RS12130	0.17	-0.0
93,969	-		EX31_RS12130	0.17	+0.5
93,969	-		EX31_RS12130	0.17	+1.1
93,969	-		EX31_RS12130	0.17	+0.4
93,978	+		EX31_RS12130	0.19	+0.3
93,979	-		EX31_RS12130	0.20	-0.1
93,979	-		EX31_RS12130	0.20	-0.3
94,011	+		EX31_RS12130	0.27	-0.5
94,011	+		EX31_RS12130	0.27	+0.1
94,011	+		EX31_RS12130	0.27	+0.5
94,011	+		EX31_RS12130	0.27	+0.3
94,011	+		EX31_RS12130	0.27	+0.3
94,011	+		EX31_RS12130	0.27	-0.7
94,012	-		EX31_RS12130	0.27	-0.1
94,012	-		EX31_RS12130	0.27	+0.9
94,012	-		EX31_RS12130	0.27	-0.3
94,012	-		EX31_RS12130	0.27	+0.1
94,012	-		EX31_RS12130	0.27	+0.1
94,012	-		EX31_RS12130	0.27	-0.7
94,012	-		EX31_RS12130	0.27	+0.7
94,012	-		EX31_RS12130	0.27	-0.6
94,033	+		EX31_RS12130	0.32	+0.1
94,033	+		EX31_RS12130	0.32	+0.6
94,034	-		EX31_RS12130	0.33	+0.1
94,034	-		EX31_RS12130	0.33	+0.6
94,034	-		EX31_RS12130	0.33	+0.4
94,066	+		EX31_RS12130	0.40	+0.3
94,066	+		EX31_RS12130	0.40	-0.4
94,066	+		EX31_RS12130	0.40	-0.4
94,066	+		EX31_RS12130	0.40	-1.1
94,066	+		EX31_RS12130	0.40	+0.3
94,066	+		EX31_RS12130	0.40	+0.4
94,067	-		EX31_RS12130	0.40	+0.0
94,067	-		EX31_RS12130	0.40	+0.0
94,067	-		EX31_RS12130	0.40	-0.7
94,067	-		EX31_RS12130	0.40	+0.1
94,067	-		EX31_RS12130	0.40	-0.3
94,067	-		EX31_RS12130	0.40	-0.3
94,075	+		EX31_RS12130	0.42	+0.3
94,075	+		EX31_RS12130	0.42	+1.0
94,155	+		EX31_RS12130	0.61	-0.4
94,155	+		EX31_RS12130	0.61	-0.5
94,155	+		EX31_RS12130	0.61	+0.9
94,156	-		EX31_RS12130	0.61	+0.8
94,156	-		EX31_RS12130	0.61	-1.3
94,156	-		EX31_RS12130	0.61	-0.1
94,156	-		EX31_RS12130	0.61	-0.7
94,156	-		EX31_RS12130	0.61	-2.2
94,170	-		EX31_RS12130	0.65	-0.6
94,271	+		EX31_RS12130	0.89	+0.7
94,271	+		EX31_RS12130	0.89	+1.1
94,322	-				-0.3
94,322	-				-0.3
94,362	+				+0.4
94,362	+				-0.3
94,362	+				-0.6
94,362	+				-0.9
94,363	-				+0.1
94,365	+				+0.2
94,366	-				+0.1
94,383	+		EX31_RS12135	0.10	+0.5
94,435	+		EX31_RS12135	0.18	+0.0
94,435	+		EX31_RS12135	0.18	-0.4
94,435	+		EX31_RS12135	0.18	+0.1
94,479	+		EX31_RS12135	0.24	-0.0
94,480	-		EX31_RS12135	0.24	-1.7
94,480	-		EX31_RS12135	0.24	+0.0
94,557	-		EX31_RS12135	0.36	-0.5
94,557	-		EX31_RS12135	0.36	-0.5
94,557	-		EX31_RS12135	0.36	-0.2
94,557	-		EX31_RS12135	0.36	-1.2
94,557	-		EX31_RS12135	0.36	+0.0
94,612	+		EX31_RS12135	0.44	+0.5
94,613	-		EX31_RS12135	0.44	-1.5
94,679	+		EX31_RS12135	0.53	+1.4
94,679	+		EX31_RS12135	0.53	-0.7
94,679	+		EX31_RS12135	0.53	+0.3
94,697	+		EX31_RS12135	0.56	-0.0
94,697	+		EX31_RS12135	0.56	-0.8
94,698	-		EX31_RS12135	0.56	-0.0
94,698	-		EX31_RS12135	0.56	-0.0
94,698	-		EX31_RS12135	0.56	-0.7
94,698	-		EX31_RS12135	0.56	-0.6
94,703	+		EX31_RS12135	0.57	+0.2
94,703	+		EX31_RS12135	0.57	-0.1
94,704	-		EX31_RS12135	0.57	-0.7
94,783	+		EX31_RS12135	0.68	+0.2
94,805	+		EX31_RS12135	0.72	+0.0
94,806	-		EX31_RS12135	0.72	-0.5
94,897	-		EX31_RS12135	0.85	-0.0
94,897	-		EX31_RS12135	0.85	-1.2
94,924	+		EX31_RS12135	0.89	+0.1
95,118	+				-0.5
95,118	+				-0.1
95,121	+				-0.7
95,121	+				-0.3
95,121	+				+1.1
95,121	+				-0.8
95,122	-				-0.4
95,122	-				-0.1
95,122	-				+0.6
95,277	+				-0.6
95,433	+				+0.5
95,433	+				+0.2
95,434	-				+0.3
95,701	-		EX31_RS12140	0.13	-0.2
95,749	+		EX31_RS12140	0.20	-0.2
95,750	-		EX31_RS12140	0.20	+0.1
95,853	+		EX31_RS12140	0.33	-0.7
95,854	-		EX31_RS12140	0.33	+0.7
95,854	-		EX31_RS12140	0.33	-0.5
95,854	-		EX31_RS12140	0.33	+0.6
95,854	-		EX31_RS12140	0.33	-0.1
95,868	+		EX31_RS12140	0.35	+0.0
95,868	+		EX31_RS12140	0.35	-1.2
95,868	+		EX31_RS12140	0.35	+0.5
95,868	+		EX31_RS12140	0.35	-2.5
95,868	+		EX31_RS12140	0.35	-0.6
95,869	-		EX31_RS12140	0.35	-0.4
95,869	-		EX31_RS12140	0.35	+0.2
95,869	-		EX31_RS12140	0.35	-2.3
95,869	-		EX31_RS12140	0.35	-0.1
95,869	-		EX31_RS12140	0.35	-0.3
95,869	-		EX31_RS12140	0.35	+0.4
95,869	-		EX31_RS12140	0.35	+0.8
95,869	-		EX31_RS12140	0.35	+0.0
95,869	-		EX31_RS12140	0.35	+1.2
95,869	-		EX31_RS12140	0.35	+0.1
95,869	-		EX31_RS12140	0.35	+0.1
95,869	-		EX31_RS12140	0.35	-0.1
95,931	+		EX31_RS12140	0.44	-0.1
95,931	+		EX31_RS12140	0.44	-0.2
95,931	+		EX31_RS12140	0.44	+0.5
95,966	+		EX31_RS12140	0.48	+1.8
95,966	+		EX31_RS12140	0.48	-0.9