Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09030 and EX31_RS09035 are separated by 101 nucleotides EX31_RS09035 and EX31_RS09040 are separated by 505 nucleotides
EX31_RS09030: EX31_RS09030 - fimbria/pilus outer membrane usher protein, at 318,199 to 320,700
_RS09030
EX31_RS09035: EX31_RS09035 - fimbrial protein, at 320,802 to 321,380
_RS09035
EX31_RS09040: EX31_RS09040 - acetate--CoA ligase, at 321,886 to 323,847
_RS09040
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.929 kb on + strand, within EX31_RS09030 at 319.929 kb on + strand, within EX31_RS09030 at 319.930 kb on - strand, within EX31_RS09030 at 319.939 kb on + strand, within EX31_RS09030 at 319.939 kb on + strand, within EX31_RS09030 at 319.939 kb on + strand, within EX31_RS09030 at 319.939 kb on + strand, within EX31_RS09030 at 319.940 kb on - strand, within EX31_RS09030 at 319.940 kb on - strand, within EX31_RS09030 at 319.940 kb on - strand, within EX31_RS09030 at 319.940 kb on - strand, within EX31_RS09030 at 319.943 kb on + strand, within EX31_RS09030 at 319.943 kb on + strand, within EX31_RS09030 at 319.943 kb on + strand, within EX31_RS09030 at 319.943 kb on + strand, within EX31_RS09030 at 319.943 kb on + strand, within EX31_RS09030 at 319.944 kb on - strand, within EX31_RS09030 at 319.944 kb on - strand, within EX31_RS09030 at 319.991 kb on + strand, within EX31_RS09030 at 319.991 kb on + strand, within EX31_RS09030 at 319.992 kb on - strand, within EX31_RS09030 at 319.997 kb on + strand, within EX31_RS09030 at 319.997 kb on + strand, within EX31_RS09030 at 319.997 kb on + strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 319.998 kb on - strand, within EX31_RS09030 at 320.019 kb on + strand, within EX31_RS09030 at 320.019 kb on + strand, within EX31_RS09030 at 320.020 kb on - strand, within EX31_RS09030 at 320.020 kb on - strand, within EX31_RS09030 at 320.020 kb on - strand, within EX31_RS09030 at 320.095 kb on - strand, within EX31_RS09030 at 320.153 kb on + strand, within EX31_RS09030 at 320.154 kb on - strand, within EX31_RS09030 at 320.154 kb on - strand, within EX31_RS09030 at 320.174 kb on + strand, within EX31_RS09030 at 320.175 kb on - strand, within EX31_RS09030 at 320.175 kb on - strand, within EX31_RS09030 at 320.175 kb on - strand, within EX31_RS09030 at 320.175 kb on - strand, within EX31_RS09030 at 320.175 kb on - strand, within EX31_RS09030 at 320.175 kb on - strand, within EX31_RS09030 at 320.448 kb on + strand, within EX31_RS09030 at 320.448 kb on + strand, within EX31_RS09030 at 320.448 kb on + strand, within EX31_RS09030 at 320.449 kb on - strand, within EX31_RS09030 at 320.449 kb on - strand, within EX31_RS09030 at 320.449 kb on - strand, within EX31_RS09030 at 320.449 kb on - strand, within EX31_RS09030 at 320.450 kb on + strand at 320.450 kb on + strand at 320.450 kb on + strand at 320.450 kb on + strand at 320.450 kb on + strand at 320.450 kb on + strand at 320.451 kb on - strand at 320.451 kb on - strand at 320.451 kb on - strand at 320.451 kb on - strand at 320.507 kb on + strand at 320.508 kb on - strand at 320.508 kb on - strand at 320.508 kb on - strand at 320.525 kb on + strand at 320.525 kb on + strand at 320.526 kb on - strand at 320.559 kb on + strand at 320.559 kb on + strand at 320.560 kb on - strand at 320.592 kb on + strand at 320.593 kb on - strand at 320.622 kb on + strand at 320.622 kb on + strand at 320.623 kb on - strand at 320.623 kb on - strand at 320.682 kb on + strand at 320.700 kb on + strand at 320.700 kb on + strand at 320.701 kb on - strand at 320.704 kb on - strand at 320.704 kb on - strand at 320.704 kb on - strand at 320.704 kb on - strand at 320.716 kb on + strand at 320.720 kb on - strand at 320.720 kb on - strand at 320.720 kb on - strand at 320.724 kb on + strand at 320.724 kb on + strand at 320.725 kb on - strand at 320.725 kb on - strand at 320.727 kb on + strand at 320.727 kb on + strand at 320.803 kb on + strand at 320.804 kb on - strand at 320.804 kb on - strand at 320.804 kb on - strand at 320.809 kb on + strand at 320.809 kb on + strand at 320.809 kb on + strand at 320.810 kb on - strand at 320.810 kb on - strand at 320.810 kb on - strand at 320.810 kb on - strand at 320.821 kb on + strand at 320.821 kb on + strand at 320.821 kb on + strand at 320.822 kb on - strand at 320.822 kb on - strand at 320.890 kb on - strand, within EX31_RS09035 at 320.890 kb on - strand, within EX31_RS09035 at 320.900 kb on + strand, within EX31_RS09035 at 320.901 kb on - strand, within EX31_RS09035 at 320.918 kb on + strand, within EX31_RS09035 at 320.919 kb on - strand, within EX31_RS09035 at 320.921 kb on + strand, within EX31_RS09035 at 320.921 kb on + strand, within EX31_RS09035 at 320.921 kb on + strand, within EX31_RS09035 at 320.922 kb on - strand, within EX31_RS09035 at 320.922 kb on - strand, within EX31_RS09035 at 320.928 kb on - strand, within EX31_RS09035 at 321.012 kb on + strand, within EX31_RS09035 at 321.012 kb on + strand, within EX31_RS09035 at 321.013 kb on - strand, within EX31_RS09035 at 321.013 kb on - strand, within EX31_RS09035 at 321.013 kb on - strand, within EX31_RS09035 at 321.068 kb on + strand, within EX31_RS09035 at 321.069 kb on - strand, within EX31_RS09035 at 321.133 kb on + strand, within EX31_RS09035 at 321.133 kb on + strand, within EX31_RS09035 at 321.134 kb on - strand, within EX31_RS09035 at 321.152 kb on - strand, within EX31_RS09035 at 321.155 kb on + strand, within EX31_RS09035 at 321.155 kb on + strand, within EX31_RS09035 at 321.155 kb on + strand, within EX31_RS09035 at 321.156 kb on - strand, within EX31_RS09035 at 321.156 kb on - strand, within EX31_RS09035 at 321.156 kb on - strand, within EX31_RS09035 at 321.156 kb on - strand, within EX31_RS09035 at 321.177 kb on - strand, within EX31_RS09035 at 321.198 kb on + strand, within EX31_RS09035 at 321.199 kb on - strand, within EX31_RS09035 at 321.199 kb on - strand, within EX31_RS09035 at 321.204 kb on - strand, within EX31_RS09035 at 321.245 kb on + strand, within EX31_RS09035 at 321.305 kb on + strand, within EX31_RS09035 at 321.306 kb on - strand, within EX31_RS09035 at 321.381 kb on - strand at 321.381 kb on - strand at 321.381 kb on - strand at 321.383 kb on + strand at 321.383 kb on + strand at 321.383 kb on + strand at 321.383 kb on + strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.384 kb on - strand at 321.405 kb on - strand at 321.408 kb on + strand at 321.408 kb on + strand at 321.408 kb on + strand at 321.409 kb on - strand at 321.409 kb on - strand at 321.409 kb on - strand at 321.409 kb on - strand at 321.418 kb on + strand at 321.426 kb on + strand at 321.426 kb on + strand at 321.426 kb on + strand at 321.427 kb on - strand at 321.427 kb on - strand at 321.427 kb on - strand at 321.574 kb on - strand at 321.598 kb on + strand at 321.614 kb on - strand at 321.624 kb on + strand at 321.624 kb on + strand at 321.627 kb on + strand at 321.627 kb on + strand at 321.628 kb on - strand at 321.628 kb on - strand at 321.628 kb on - strand at 321.628 kb on - strand at 321.736 kb on + strand at 321.736 kb on + strand at 321.736 kb on + strand at 321.736 kb on + strand at 321.736 kb on + strand at 321.736 kb on + strand at 321.737 kb on - strand at 321.737 kb on - strand at 321.737 kb on - strand at 321.737 kb on - strand at 321.737 kb on - strand at 321.765 kb on + strand at 321.765 kb on + strand at 321.765 kb on + strand at 321.766 kb on - strand at 321.766 kb on - strand at 321.766 kb on - strand at 321.766 kb on - strand at 321.767 kb on + strand at 321.767 kb on + strand at 321.768 kb on - strand at 321.768 kb on - strand at 321.857 kb on + strand at 321.872 kb on - strand at 321.898 kb on + strand at 321.898 kb on + strand at 321.898 kb on + strand at 321.899 kb on - strand at 321.899 kb on - strand at 321.900 kb on + strand at 321.900 kb on + strand at 321.900 kb on + strand at 321.900 kb on + strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.901 kb on - strand at 321.910 kb on - strand at 321.923 kb on + strand at 321.923 kb on + strand at 321.933 kb on + strand at 321.964 kb on + strand at 321.965 kb on - strand at 322.032 kb on + strand at 322.033 kb on - strand at 322.122 kb on + strand, within EX31_RS09040 at 322.122 kb on + strand, within EX31_RS09040 at 322.122 kb on + strand, within EX31_RS09040 at 322.122 kb on + strand, within EX31_RS09040 at 322.122 kb on + strand, within EX31_RS09040 at 322.122 kb on + strand, within EX31_RS09040 at 322.122 kb on + strand, within EX31_RS09040 at 322.142 kb on + strand, within EX31_RS09040 at 322.143 kb on - strand, within EX31_RS09040 at 322.203 kb on + strand, within EX31_RS09040 at 322.216 kb on + strand, within EX31_RS09040 at 322.216 kb on + strand, within EX31_RS09040 at 322.216 kb on + strand, within EX31_RS09040 at 322.217 kb on - strand, within EX31_RS09040 at 322.217 kb on - strand, within EX31_RS09040 at 322.217 kb on - strand, within EX31_RS09040 at 322.252 kb on - strand, within EX31_RS09040 at 322.297 kb on - strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.300 kb on + strand, within EX31_RS09040 at 322.301 kb on - strand, within EX31_RS09040 at 322.301 kb on - strand, within EX31_RS09040 at 322.301 kb on - strand, within EX31_RS09040 at 322.301 kb on - strand, within EX31_RS09040 at 322.308 kb on + strand, within EX31_RS09040 at 322.308 kb on + strand, within EX31_RS09040 at 322.309 kb on - strand, within EX31_RS09040 at 322.309 kb on - strand, within EX31_RS09040
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 319,929 + EX31_RS09030 0.69 +0.8 319,929 + EX31_RS09030 0.69 +0.3 319,930 - EX31_RS09030 0.69 +0.6 319,939 + EX31_RS09030 0.70 +0.3 319,939 + EX31_RS09030 0.70 -0.0 319,939 + EX31_RS09030 0.70 +0.8 319,939 + EX31_RS09030 0.70 +0.8 319,940 - EX31_RS09030 0.70 -0.2 319,940 - EX31_RS09030 0.70 -0.3 319,940 - EX31_RS09030 0.70 -1.1 319,940 - EX31_RS09030 0.70 -1.1 319,943 + EX31_RS09030 0.70 +0.4 319,943 + EX31_RS09030 0.70 -0.3 319,943 + EX31_RS09030 0.70 +0.3 319,943 + EX31_RS09030 0.70 +0.6 319,943 + EX31_RS09030 0.70 +0.3 319,944 - EX31_RS09030 0.70 +0.2 319,944 - EX31_RS09030 0.70 -0.1 319,991 + EX31_RS09030 0.72 -0.1 319,991 + EX31_RS09030 0.72 +0.9 319,992 - EX31_RS09030 0.72 +0.5 319,997 + EX31_RS09030 0.72 -1.6 319,997 + EX31_RS09030 0.72 +0.4 319,997 + EX31_RS09030 0.72 +1.0 319,998 - EX31_RS09030 0.72 +0.0 319,998 - EX31_RS09030 0.72 +0.3 319,998 - EX31_RS09030 0.72 -0.1 319,998 - EX31_RS09030 0.72 -0.0 319,998 - EX31_RS09030 0.72 +0.3 319,998 - EX31_RS09030 0.72 +0.6 319,998 - EX31_RS09030 0.72 +0.2 319,998 - EX31_RS09030 0.72 -0.4 319,998 - EX31_RS09030 0.72 +0.3 320,019 + EX31_RS09030 0.73 +0.5 320,019 + EX31_RS09030 0.73 +0.5 320,020 - EX31_RS09030 0.73 -0.1 320,020 - EX31_RS09030 0.73 +0.7 320,020 - EX31_RS09030 0.73 -0.2 320,095 - EX31_RS09030 0.76 -0.8 320,153 + EX31_RS09030 0.78 +0.2 320,154 - EX31_RS09030 0.78 +0.8 320,154 - EX31_RS09030 0.78 +0.4 320,174 + EX31_RS09030 0.79 +0.7 320,175 - EX31_RS09030 0.79 -0.8 320,175 - EX31_RS09030 0.79 +0.3 320,175 - EX31_RS09030 0.79 +0.6 320,175 - EX31_RS09030 0.79 -0.3 320,175 - EX31_RS09030 0.79 +1.1 320,175 - EX31_RS09030 0.79 +0.2 320,448 + EX31_RS09030 0.90 +0.2 320,448 + EX31_RS09030 0.90 +0.7 320,448 + EX31_RS09030 0.90 +0.3 320,449 - EX31_RS09030 0.90 +0.1 320,449 - EX31_RS09030 0.90 +0.3 320,449 - EX31_RS09030 0.90 -1.0 320,449 - EX31_RS09030 0.90 +0.6 320,450 + -0.2 320,450 + +0.7 320,450 + +1.3 320,450 + +0.3 320,450 + +0.7 320,450 + -0.0 320,451 - +0.4 320,451 - +0.5 320,451 - -0.1 320,451 - +0.3 320,507 + +0.3 320,508 - +1.1 320,508 - +1.0 320,508 - -0.0 320,525 + +0.3 320,525 + -0.6 320,526 - +0.5 320,559 + -0.1 320,559 + +0.3 320,560 - +0.4 320,592 + +0.3 320,593 - +1.1 320,622 + -0.1 320,622 + +0.1 320,623 - -0.2 320,623 - +0.5 320,682 + +0.1 320,700 + -0.8 320,700 + +0.2 320,701 - -0.1 320,704 - -0.0 320,704 - +0.1 320,704 - +0.9 320,704 - +0.4 320,716 + +0.4 320,720 - -0.3 320,720 - -1.5 320,720 - -0.5 320,724 + +0.6 320,724 + +0.3 320,725 - +0.7 320,725 - +0.3 320,727 + +0.3 320,727 + +0.1 320,803 + +0.4 320,804 - +1.1 320,804 - +0.6 320,804 - +0.6 320,809 + +0.3 320,809 + +0.2 320,809 + +0.3 320,810 - +0.4 320,810 - +0.7 320,810 - +0.7 320,810 - +1.2 320,821 + +0.4 320,821 + +0.3 320,821 + +0.5 320,822 - +0.8 320,822 - +0.9 320,890 - EX31_RS09035 0.15 +0.9 320,890 - EX31_RS09035 0.15 +0.8 320,900 + EX31_RS09035 0.17 +0.5 320,901 - EX31_RS09035 0.17 +0.3 320,918 + EX31_RS09035 0.20 -0.5 320,919 - EX31_RS09035 0.20 +0.6 320,921 + EX31_RS09035 0.21 +0.9 320,921 + EX31_RS09035 0.21 +0.0 320,921 + EX31_RS09035 0.21 +0.1 320,922 - EX31_RS09035 0.21 +1.8 320,922 - EX31_RS09035 0.21 +0.3 320,928 - EX31_RS09035 0.22 +0.6 321,012 + EX31_RS09035 0.36 +0.1 321,012 + EX31_RS09035 0.36 +0.4 321,013 - EX31_RS09035 0.36 +0.9 321,013 - EX31_RS09035 0.36 +1.3 321,013 - EX31_RS09035 0.36 +0.9 321,068 + EX31_RS09035 0.46 +0.4 321,069 - EX31_RS09035 0.46 +0.5 321,133 + EX31_RS09035 0.57 +0.5 321,133 + EX31_RS09035 0.57 -0.2 321,134 - EX31_RS09035 0.57 +0.6 321,152 - EX31_RS09035 0.60 -0.2 321,155 + EX31_RS09035 0.61 -0.5 321,155 + EX31_RS09035 0.61 -0.4 321,155 + EX31_RS09035 0.61 +0.2 321,156 - EX31_RS09035 0.61 +0.4 321,156 - EX31_RS09035 0.61 -0.4 321,156 - EX31_RS09035 0.61 +0.5 321,156 - EX31_RS09035 0.61 -0.3 321,177 - EX31_RS09035 0.65 +0.9 321,198 + EX31_RS09035 0.68 -0.1 321,199 - EX31_RS09035 0.69 +0.5 321,199 - EX31_RS09035 0.69 +0.7 321,204 - EX31_RS09035 0.69 +0.7 321,245 + EX31_RS09035 0.77 +1.2 321,305 + EX31_RS09035 0.87 +0.3 321,306 - EX31_RS09035 0.87 +0.7 321,381 - +0.9 321,381 - +0.4 321,381 - +0.1 321,383 + +0.4 321,383 + +0.1 321,383 + +0.6 321,383 + +0.9 321,384 - +0.6 321,384 - -0.5 321,384 - -0.2 321,384 - -0.1 321,384 - +1.0 321,384 - -0.4 321,384 - +1.2 321,384 - +0.9 321,384 - -0.2 321,384 - -0.3 321,405 - +0.7 321,408 + -0.2 321,408 + -0.1 321,408 + +0.6 321,409 - +0.9 321,409 - +1.3 321,409 - +1.1 321,409 - +0.5 321,418 + +0.3 321,426 + +1.6 321,426 + +0.6 321,426 + +0.4 321,427 - +0.9 321,427 - +0.4 321,427 - +1.2 321,574 - +0.2 321,598 + +0.0 321,614 - -0.2 321,624 + +0.2 321,624 + -0.0 321,627 + +0.7 321,627 + +1.2 321,628 - -1.9 321,628 - +0.7 321,628 - -0.6 321,628 - +1.3 321,736 + +0.8 321,736 + +0.1 321,736 + +0.0 321,736 + -0.4 321,736 + -0.4 321,736 + +0.9 321,737 - +0.2 321,737 - -0.8 321,737 - +0.5 321,737 - -0.1 321,737 - -0.5 321,765 + +0.0 321,765 + -0.6 321,765 + -0.9 321,766 - +0.3 321,766 - +0.7 321,766 - -0.1 321,766 - -1.2 321,767 + -0.6 321,767 + -0.1 321,768 - -0.3 321,768 - +0.1 321,857 + -0.2 321,872 - -0.1 321,898 + -0.4 321,898 + -1.0 321,898 + +0.8 321,899 - -0.8 321,899 - -1.3 321,900 + -0.9 321,900 + +0.3 321,900 + +0.3 321,900 + +0.2 321,901 - +0.1 321,901 - -0.8 321,901 - -0.1 321,901 - -0.3 321,910 - -0.3 321,923 + -0.7 321,923 + -0.1 321,933 + +0.1 321,964 + +0.4 321,965 - -0.2 322,032 + -0.5 322,033 - +0.9 322,122 + EX31_RS09040 0.12 -0.1 322,122 + EX31_RS09040 0.12 +0.8 322,122 + EX31_RS09040 0.12 +1.1 322,122 + EX31_RS09040 0.12 -0.4 322,122 + EX31_RS09040 0.12 +0.2 322,122 + EX31_RS09040 0.12 +0.5 322,122 + EX31_RS09040 0.12 -0.6 322,142 + EX31_RS09040 0.13 -0.4 322,143 - EX31_RS09040 0.13 -1.0 322,203 + EX31_RS09040 0.16 +0.4 322,216 + EX31_RS09040 0.17 +1.0 322,216 + EX31_RS09040 0.17 +0.1 322,216 + EX31_RS09040 0.17 +0.1 322,217 - EX31_RS09040 0.17 -0.7 322,217 - EX31_RS09040 0.17 -0.7 322,217 - EX31_RS09040 0.17 -0.0 322,252 - EX31_RS09040 0.19 -0.6 322,297 - EX31_RS09040 0.21 +0.3 322,300 + EX31_RS09040 0.21 +0.7 322,300 + EX31_RS09040 0.21 -0.1 322,300 + EX31_RS09040 0.21 +0.3 322,300 + EX31_RS09040 0.21 -0.0 322,300 + EX31_RS09040 0.21 -0.9 322,300 + EX31_RS09040 0.21 -1.6 322,300 + EX31_RS09040 0.21 -0.4 322,300 + EX31_RS09040 0.21 +0.8 322,300 + EX31_RS09040 0.21 -1.7 322,300 + EX31_RS09040 0.21 +0.5 322,300 + EX31_RS09040 0.21 -0.4 322,301 - EX31_RS09040 0.21 -0.8 322,301 - EX31_RS09040 0.21 -0.1 322,301 - EX31_RS09040 0.21 -0.9 322,301 - EX31_RS09040 0.21 +0.1 322,308 + EX31_RS09040 0.22 -0.1 322,308 + EX31_RS09040 0.22 +0.4 322,309 - EX31_RS09040 0.22 -1.3 322,309 - EX31_RS09040 0.22 +0.6
Or see this region's nucleotide sequence