Strain Fitness in Rahnella sp. WP5 around EX31_RS07155

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07150 and EX31_RS07155 are separated by 149 nucleotidesEX31_RS07155 and EX31_RS07160 are separated by 138 nucleotides EX31_RS07150: EX31_RS07150 - FdhF/YdeP family oxidoreductase, at 222,816 to 225,122 _RS07150 EX31_RS07155: EX31_RS07155 - exoribonuclease II, at 225,272 to 227,215 _RS07155 EX31_RS07160: EX31_RS07160 - HTH-type transcriptional regulator Cbl, at 227,354 to 228,307 _RS07160 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2at 224.303 kb on + strand, within EX31_RS07150at 224.303 kb on + strand, within EX31_RS07150at 224.303 kb on + strand, within EX31_RS07150at 224.411 kb on + strand, within EX31_RS07150at 224.411 kb on + strand, within EX31_RS07150at 224.411 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.419 kb on + strand, within EX31_RS07150at 224.420 kb on - strand, within EX31_RS07150at 224.437 kb on + strand, within EX31_RS07150at 224.513 kb on + strand, within EX31_RS07150at 224.513 kb on + strand, within EX31_RS07150at 224.513 kb on + strand, within EX31_RS07150at 224.514 kb on - strand, within EX31_RS07150at 224.517 kb on + strand, within EX31_RS07150at 224.517 kb on + strand, within EX31_RS07150at 224.517 kb on + strand, within EX31_RS07150at 224.547 kb on + strand, within EX31_RS07150at 224.547 kb on + strand, within EX31_RS07150at 224.547 kb on + strand, within EX31_RS07150at 224.547 kb on + strand, within EX31_RS07150at 224.548 kb on - strand, within EX31_RS07150at 224.567 kb on + strand, within EX31_RS07150at 224.567 kb on + strand, within EX31_RS07150at 224.567 kb on + strand, within EX31_RS07150at 224.568 kb on - strand, within EX31_RS07150at 224.631 kb on + strand, within EX31_RS07150at 224.631 kb on + strand, within EX31_RS07150at 224.632 kb on - strand, within EX31_RS07150at 224.713 kb on + strand, within EX31_RS07150at 224.713 kb on + strand, within EX31_RS07150at 224.761 kb on + strand, within EX31_RS07150at 224.778 kb on + strand, within EX31_RS07150at 224.778 kb on + strand, within EX31_RS07150at 224.793 kb on + strand, within EX31_RS07150at 224.793 kb on + strand, within EX31_RS07150at 224.823 kb on + strand, within EX31_RS07150at 224.823 kb on + strand, within EX31_RS07150at 224.823 kb on + strand, within EX31_RS07150at 224.924 kb on + strandat 224.962 kb on - strandat 224.991 kb on + strandat 224.991 kb on + strandat 224.991 kb on + strandat 224.991 kb on + strandat 224.991 kb on + strandat 224.991 kb on + strandat 225.113 kb on + strandat 225.113 kb on + strandat 225.113 kb on + strandat 225.120 kb on + strandat 225.127 kb on + strandat 225.127 kb on + strandat 225.170 kb on + strandat 225.171 kb on - strandat 225.271 kb on + strandat 225.271 kb on + strandat 225.272 kb on - strandat 225.303 kb on + strandat 225.304 kb on - strandat 225.348 kb on + strandat 225.348 kb on + strandat 225.420 kb on - strandat 225.566 kb on - strand, within EX31_RS07155at 225.585 kb on + strand, within EX31_RS07155at 225.585 kb on + strand, within EX31_RS07155at 225.588 kb on + strand, within EX31_RS07155at 225.588 kb on + strand, within EX31_RS07155at 225.598 kb on + strand, within EX31_RS07155at 225.598 kb on + strand, within EX31_RS07155at 225.598 kb on + strand, within EX31_RS07155at 225.911 kb on + strand, within EX31_RS07155at 225.911 kb on + strand, within EX31_RS07155at 226.032 kb on - strand, within EX31_RS07155at 226.081 kb on + strand, within EX31_RS07155at 226.082 kb on - strand, within EX31_RS07155at 226.137 kb on + strand, within EX31_RS07155at 226.350 kb on + strand, within EX31_RS07155at 226.354 kb on + strand, within EX31_RS07155at 226.355 kb on - strand, within EX31_RS07155at 226.517 kb on + strand, within EX31_RS07155at 226.517 kb on + strand, within EX31_RS07155at 226.754 kb on + strand, within EX31_RS07155at 226.774 kb on + strand, within EX31_RS07155at 226.780 kb on + strand, within EX31_RS07155at 226.928 kb on + strand, within EX31_RS07155at 226.928 kb on + strand, within EX31_RS07155at 226.929 kb on - strand, within EX31_RS07155at 226.949 kb on - strand, within EX31_RS07155at 226.966 kb on + strand, within EX31_RS07155at 227.013 kb on + strand, within EX31_RS07155at 227.013 kb on + strand, within EX31_RS07155at 227.013 kb on + strand, within EX31_RS07155at 227.014 kb on - strand, within EX31_RS07155at 227.014 kb on - strand, within EX31_RS07155at 227.014 kb on - strand, within EX31_RS07155at 227.116 kb on + strandat 227.116 kb on + strandat 227.117 kb on - strandat 227.213 kb on + strandat 227.397 kb on - strandat 227.456 kb on + strand, within EX31_RS07160at 227.461 kb on - strand, within EX31_RS07160at 227.461 kb on - strand, within EX31_RS07160at 227.461 kb on - strand, within EX31_RS07160at 227.504 kb on - strand, within EX31_RS07160at 227.516 kb on + strand, within EX31_RS07160at 227.618 kb on - strand, within EX31_RS07160at 227.618 kb on - strand, within EX31_RS07160at 227.718 kb on + strand, within EX31_RS07160at 227.718 kb on + strand, within EX31_RS07160at 227.719 kb on - strand, within EX31_RS07160at 227.719 kb on - strand, within EX31_RS07160at 227.820 kb on + strand, within EX31_RS07160at 227.953 kb on - strand, within EX31_RS07160at 228.165 kb on - strand, within EX31_RS07160

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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224,303 + EX31_RS07150 0.64 +0.6
224,303 + EX31_RS07150 0.64 +0.6
224,303 + EX31_RS07150 0.64 +0.4
224,411 + EX31_RS07150 0.69 +1.0
224,411 + EX31_RS07150 0.69 -0.8
224,411 + EX31_RS07150 0.69 +1.1
224,419 + EX31_RS07150 0.69 +1.1
224,419 + EX31_RS07150 0.69 +0.6
224,419 + EX31_RS07150 0.69 +1.2
224,419 + EX31_RS07150 0.69 +1.1
224,419 + EX31_RS07150 0.69 -0.4
224,419 + EX31_RS07150 0.69 +1.6
224,419 + EX31_RS07150 0.69 +0.5
224,419 + EX31_RS07150 0.69 +1.5
224,419 + EX31_RS07150 0.69 +0.1
224,419 + EX31_RS07150 0.69 -0.8
224,419 + EX31_RS07150 0.69 +0.7
224,419 + EX31_RS07150 0.69 +0.3
224,419 + EX31_RS07150 0.69 +0.2
224,419 + EX31_RS07150 0.69 -1.5
224,420 - EX31_RS07150 0.70 +0.4
224,437 + EX31_RS07150 0.70 +0.5
224,513 + EX31_RS07150 0.74 +1.4
224,513 + EX31_RS07150 0.74 +1.1
224,513 + EX31_RS07150 0.74 +1.1
224,514 - EX31_RS07150 0.74 +0.4
224,517 + EX31_RS07150 0.74 +0.7
224,517 + EX31_RS07150 0.74 +1.2
224,517 + EX31_RS07150 0.74 +0.2
224,547 + EX31_RS07150 0.75 +0.2
224,547 + EX31_RS07150 0.75 +0.6
224,547 + EX31_RS07150 0.75 +0.5
224,547 + EX31_RS07150 0.75 +1.3
224,548 - EX31_RS07150 0.75 +0.1
224,567 + EX31_RS07150 0.76 +0.2
224,567 + EX31_RS07150 0.76 +0.8
224,567 + EX31_RS07150 0.76 +0.7
224,568 - EX31_RS07150 0.76 +0.3
224,631 + EX31_RS07150 0.79 +1.0
224,631 + EX31_RS07150 0.79 +0.1
224,632 - EX31_RS07150 0.79 -0.2
224,713 + EX31_RS07150 0.82 +1.1
224,713 + EX31_RS07150 0.82 -0.7
224,761 + EX31_RS07150 0.84 -0.4
224,778 + EX31_RS07150 0.85 -0.1
224,778 + EX31_RS07150 0.85 +0.8
224,793 + EX31_RS07150 0.86 +0.8
224,793 + EX31_RS07150 0.86 +0.9
224,823 + EX31_RS07150 0.87 +0.5
224,823 + EX31_RS07150 0.87 -0.3
224,823 + EX31_RS07150 0.87 +1.2
224,924 + +0.5
224,962 - -0.3
224,991 + +0.7
224,991 + +1.0
224,991 + +1.9
224,991 + +0.9
224,991 + +1.0
224,991 + +1.3
225,113 + -1.0
225,113 + +0.1
225,113 + +1.1
225,120 + +0.9
225,127 + -0.3
225,127 + -0.4
225,170 + +0.8
225,171 - -2.5
225,271 + +0.8
225,271 + +0.4
225,272 - -1.1
225,303 + -0.2
225,304 - +1.7
225,348 + +0.0
225,348 + +2.3
225,420 - +0.7
225,566 - EX31_RS07155 0.15 -0.4
225,585 + EX31_RS07155 0.16 -0.1
225,585 + EX31_RS07155 0.16 -0.7
225,588 + EX31_RS07155 0.16 +1.6
225,588 + EX31_RS07155 0.16 -0.5
225,598 + EX31_RS07155 0.17 -0.4
225,598 + EX31_RS07155 0.17 +0.3
225,598 + EX31_RS07155 0.17 +0.5
225,911 + EX31_RS07155 0.33 -0.1
225,911 + EX31_RS07155 0.33 +1.0
226,032 - EX31_RS07155 0.39 -0.4
226,081 + EX31_RS07155 0.42 +0.9
226,082 - EX31_RS07155 0.42 +0.2
226,137 + EX31_RS07155 0.44 +1.6
226,350 + EX31_RS07155 0.55 -0.7
226,354 + EX31_RS07155 0.56 +1.3
226,355 - EX31_RS07155 0.56 -1.6
226,517 + EX31_RS07155 0.64 -0.1
226,517 + EX31_RS07155 0.64 +0.9
226,754 + EX31_RS07155 0.76 -1.3
226,774 + EX31_RS07155 0.77 +1.1
226,780 + EX31_RS07155 0.78 +0.1
226,928 + EX31_RS07155 0.85 +0.9
226,928 + EX31_RS07155 0.85 -0.9
226,929 - EX31_RS07155 0.85 -1.0
226,949 - EX31_RS07155 0.86 -1.6
226,966 + EX31_RS07155 0.87 +0.8
227,013 + EX31_RS07155 0.90 +1.4
227,013 + EX31_RS07155 0.90 +1.5
227,013 + EX31_RS07155 0.90 +0.9
227,014 - EX31_RS07155 0.90 +0.9
227,014 - EX31_RS07155 0.90 +0.3
227,014 - EX31_RS07155 0.90 -1.3
227,116 + +0.7
227,116 + +0.1
227,117 - -0.1
227,213 + -0.7
227,397 - +1.1
227,456 + EX31_RS07160 0.11 +0.1
227,461 - EX31_RS07160 0.11 +0.9
227,461 - EX31_RS07160 0.11 +0.1
227,461 - EX31_RS07160 0.11 +1.9
227,504 - EX31_RS07160 0.16 -1.3
227,516 + EX31_RS07160 0.17 -0.3
227,618 - EX31_RS07160 0.28 -0.7
227,618 - EX31_RS07160 0.28 +0.5
227,718 + EX31_RS07160 0.38 +0.1
227,718 + EX31_RS07160 0.38 +0.4
227,719 - EX31_RS07160 0.38 +1.3
227,719 - EX31_RS07160 0.38 +0.1
227,820 + EX31_RS07160 0.49 +0.1
227,953 - EX31_RS07160 0.63 -0.6
228,165 - EX31_RS07160 0.85 +0.4

Or see this region's nucleotide sequence