Strain Fitness in Rahnella sp. WP5 around EX31_RS02145

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02140 and EX31_RS02145 are separated by 31 nucleotidesEX31_RS02145 and EX31_RS02150 are separated by 197 nucleotidesEX31_RS02150 and EX31_RS02155 are separated by 69 nucleotides EX31_RS02140: EX31_RS02140 - DUF1852 domain-containing protein, at 467,036 to 468,019 _RS02140 EX31_RS02145: EX31_RS02145 - methionine synthase, at 468,051 to 469,082 _RS02145 EX31_RS02150: EX31_RS02150 - YceI family protein, at 469,280 to 469,840 _RS02150 EX31_RS02155: EX31_RS02155 - HD domain-containing protein, at 469,910 to 471,040 _RS02155 Position (kb) 468 469 470Strain fitness (log2 ratio) -2 -1 0 1 2at 467.087 kb on + strandat 467.088 kb on - strandat 467.090 kb on - strandat 467.104 kb on + strandat 467.333 kb on - strand, within EX31_RS02140at 467.434 kb on + strand, within EX31_RS02140at 467.434 kb on + strand, within EX31_RS02140at 467.582 kb on + strand, within EX31_RS02140at 467.582 kb on + strand, within EX31_RS02140at 467.586 kb on - strand, within EX31_RS02140at 467.599 kb on + strand, within EX31_RS02140at 467.657 kb on + strand, within EX31_RS02140at 467.770 kb on + strand, within EX31_RS02140at 467.825 kb on + strand, within EX31_RS02140at 467.826 kb on - strand, within EX31_RS02140at 467.833 kb on + strand, within EX31_RS02140at 467.851 kb on - strand, within EX31_RS02140at 467.889 kb on + strand, within EX31_RS02140at 467.903 kb on + strand, within EX31_RS02140at 467.921 kb on - strandat 468.036 kb on + strandat 468.037 kb on - strandat 468.215 kb on + strand, within EX31_RS02145at 468.420 kb on - strand, within EX31_RS02145at 468.467 kb on + strand, within EX31_RS02145at 468.475 kb on - strand, within EX31_RS02145at 468.486 kb on + strand, within EX31_RS02145at 468.487 kb on - strand, within EX31_RS02145at 468.488 kb on + strand, within EX31_RS02145at 468.488 kb on + strand, within EX31_RS02145at 469.036 kb on + strandat 469.036 kb on + strandat 469.036 kb on + strandat 469.036 kb on + strandat 469.036 kb on + strandat 469.036 kb on + strandat 469.037 kb on - strandat 469.037 kb on - strandat 469.037 kb on - strandat 469.037 kb on - strandat 469.105 kb on + strandat 469.173 kb on + strandat 469.173 kb on + strandat 469.173 kb on + strandat 469.174 kb on - strandat 469.174 kb on - strandat 469.288 kb on + strandat 469.289 kb on - strandat 469.289 kb on - strandat 469.289 kb on - strandat 469.289 kb on - strandat 469.289 kb on - strandat 469.289 kb on - strandat 469.290 kb on + strandat 469.290 kb on + strandat 469.291 kb on - strandat 469.291 kb on - strandat 469.322 kb on - strandat 469.426 kb on + strand, within EX31_RS02150at 469.427 kb on - strand, within EX31_RS02150at 469.564 kb on + strand, within EX31_RS02150at 469.564 kb on + strand, within EX31_RS02150at 469.564 kb on + strand, within EX31_RS02150at 469.564 kb on + strand, within EX31_RS02150at 469.564 kb on + strand, within EX31_RS02150at 469.564 kb on + strand, within EX31_RS02150at 469.564 kb on + strand, within EX31_RS02150at 469.565 kb on - strand, within EX31_RS02150at 469.574 kb on + strand, within EX31_RS02150at 469.574 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.634 kb on + strand, within EX31_RS02150at 469.635 kb on - strand, within EX31_RS02150at 469.635 kb on - strand, within EX31_RS02150at 469.635 kb on - strand, within EX31_RS02150at 469.738 kb on + strand, within EX31_RS02150at 469.739 kb on - strand, within EX31_RS02150at 469.739 kb on - strand, within EX31_RS02150at 469.911 kb on + strandat 469.939 kb on + strandat 470.050 kb on - strand, within EX31_RS02155at 470.062 kb on - strand, within EX31_RS02155

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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467,087 + +0.1
467,088 - -2.2
467,090 - -0.3
467,104 + -0.2
467,333 - EX31_RS02140 0.30 -0.4
467,434 + EX31_RS02140 0.40 +0.8
467,434 + EX31_RS02140 0.40 +0.7
467,582 + EX31_RS02140 0.55 +0.3
467,582 + EX31_RS02140 0.55 -0.6
467,586 - EX31_RS02140 0.56 -2.3
467,599 + EX31_RS02140 0.57 -2.4
467,657 + EX31_RS02140 0.63 -0.3
467,770 + EX31_RS02140 0.75 -0.9
467,825 + EX31_RS02140 0.80 -1.1
467,826 - EX31_RS02140 0.80 +0.3
467,833 + EX31_RS02140 0.81 +0.1
467,851 - EX31_RS02140 0.83 -0.3
467,889 + EX31_RS02140 0.87 +0.8
467,903 + EX31_RS02140 0.88 -0.2
467,921 - +0.8
468,036 + -0.3
468,037 - -0.0
468,215 + EX31_RS02145 0.16 +1.4
468,420 - EX31_RS02145 0.36 -0.1
468,467 + EX31_RS02145 0.40 -0.2
468,475 - EX31_RS02145 0.41 -2.7
468,486 + EX31_RS02145 0.42 +1.2
468,487 - EX31_RS02145 0.42 -0.4
468,488 + EX31_RS02145 0.42 +0.3
468,488 + EX31_RS02145 0.42 +0.4
469,036 + -0.2
469,036 + +0.1
469,036 + +1.6
469,036 + +0.1
469,036 + +2.1
469,036 + +1.6
469,037 - -1.5
469,037 - -0.1
469,037 - -1.3
469,037 - -0.4
469,105 + -1.2
469,173 + -0.3
469,173 + +0.2
469,173 + +0.4
469,174 - -1.1
469,174 - -0.1
469,288 + +0.6
469,289 - -0.6
469,289 - +0.9
469,289 - -0.3
469,289 - +0.0
469,289 - -0.5
469,289 - +0.4
469,290 + -0.7
469,290 + -0.9
469,291 - +0.4
469,291 - -1.1
469,322 - +0.7
469,426 + EX31_RS02150 0.26 +0.6
469,427 - EX31_RS02150 0.26 +1.0
469,564 + EX31_RS02150 0.51 -0.1
469,564 + EX31_RS02150 0.51 +0.8
469,564 + EX31_RS02150 0.51 -0.1
469,564 + EX31_RS02150 0.51 +1.3
469,564 + EX31_RS02150 0.51 -0.0
469,564 + EX31_RS02150 0.51 -0.5
469,564 + EX31_RS02150 0.51 +0.0
469,565 - EX31_RS02150 0.51 +0.1
469,574 + EX31_RS02150 0.52 -0.7
469,574 + EX31_RS02150 0.52 -0.3
469,634 + EX31_RS02150 0.63 +0.2
469,634 + EX31_RS02150 0.63 -0.8
469,634 + EX31_RS02150 0.63 -1.5
469,634 + EX31_RS02150 0.63 +0.1
469,634 + EX31_RS02150 0.63 +0.0
469,634 + EX31_RS02150 0.63 +0.1
469,634 + EX31_RS02150 0.63 +0.1
469,634 + EX31_RS02150 0.63 -0.3
469,634 + EX31_RS02150 0.63 +0.8
469,635 - EX31_RS02150 0.63 -0.1
469,635 - EX31_RS02150 0.63 -0.6
469,635 - EX31_RS02150 0.63 +0.7
469,738 + EX31_RS02150 0.82 -1.9
469,739 - EX31_RS02150 0.82 -0.3
469,739 - EX31_RS02150 0.82 +0.2
469,911 + +0.9
469,939 + -1.5
470,050 - EX31_RS02155 0.12 -1.2
470,062 - EX31_RS02155 0.13 +0.9

Or see this region's nucleotide sequence