Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00725 and EX31_RS00730 are separated by 18 nucleotides EX31_RS00730 and EX31_RS00735 are separated by 655 nucleotides
EX31_RS00725: EX31_RS00725 - diaminobutyrate--2-oxoglutarate transaminase, at 154,707 to 156,092
_RS00725
EX31_RS00730: EX31_RS00730 - aspartate aminotransferase family protein, at 156,111 to 157,583
_RS00730
EX31_RS00735: EX31_RS00735 - mechanosensitive ion channel family protein, at 158,239 to 159,315
_RS00735
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.156 kb on + strand, within EX31_RS00725 at 155.267 kb on + strand, within EX31_RS00725 at 155.267 kb on + strand, within EX31_RS00725 at 155.268 kb on - strand, within EX31_RS00725 at 155.268 kb on - strand, within EX31_RS00725 at 155.274 kb on + strand, within EX31_RS00725 at 155.332 kb on + strand, within EX31_RS00725 at 155.332 kb on + strand, within EX31_RS00725 at 155.340 kb on + strand, within EX31_RS00725 at 155.576 kb on + strand, within EX31_RS00725 at 155.576 kb on + strand, within EX31_RS00725 at 155.630 kb on + strand, within EX31_RS00725 at 156.047 kb on + strand at 156.099 kb on + strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.260 kb on + strand, within EX31_RS00730 at 156.260 kb on + strand, within EX31_RS00730 at 156.324 kb on + strand, within EX31_RS00730 at 156.440 kb on + strand, within EX31_RS00730 at 156.440 kb on + strand, within EX31_RS00730 at 156.506 kb on + strand, within EX31_RS00730 at 156.506 kb on + strand, within EX31_RS00730 at 156.670 kb on + strand, within EX31_RS00730 at 156.670 kb on + strand, within EX31_RS00730 at 156.670 kb on + strand, within EX31_RS00730 at 156.981 kb on + strand, within EX31_RS00730 at 156.981 kb on + strand, within EX31_RS00730 at 156.981 kb on + strand, within EX31_RS00730 at 157.000 kb on + strand, within EX31_RS00730 at 157.239 kb on + strand, within EX31_RS00730 at 157.290 kb on + strand, within EX31_RS00730 at 157.290 kb on + strand, within EX31_RS00730 at 157.291 kb on - strand, within EX31_RS00730 at 157.469 kb on + strand at 157.581 kb on + strand at 157.581 kb on + strand at 157.581 kb on + strand at 157.582 kb on - strand at 157.589 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.600 kb on - strand at 157.600 kb on - strand at 157.600 kb on - strand at 157.600 kb on - strand at 157.641 kb on - strand at 157.648 kb on + strand at 157.649 kb on - strand at 157.698 kb on - strand at 157.743 kb on - strand at 157.743 kb on - strand at 157.747 kb on - strand at 157.752 kb on + strand at 157.753 kb on - strand at 157.762 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.797 kb on + strand at 157.797 kb on + strand at 157.856 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 158.021 kb on - strand at 158.080 kb on - strand at 158.080 kb on - strand at 158.095 kb on + strand at 158.098 kb on + strand at 158.099 kb on - strand at 158.100 kb on + strand at 158.100 kb on + strand at 158.135 kb on + strand at 158.136 kb on - strand at 158.206 kb on - strand at 158.223 kb on - strand at 158.297 kb on + strand at 158.335 kb on + strand at 158.335 kb on + strand at 158.335 kb on + strand at 158.336 kb on - strand at 158.378 kb on + strand, within EX31_RS00735 at 158.378 kb on + strand, within EX31_RS00735 at 158.455 kb on - strand, within EX31_RS00735 at 158.460 kb on - strand, within EX31_RS00735
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 155,156 + EX31_RS00725 0.32 +1.3 155,267 + EX31_RS00725 0.40 -0.6 155,267 + EX31_RS00725 0.40 -0.1 155,268 - EX31_RS00725 0.40 +0.5 155,268 - EX31_RS00725 0.40 -0.3 155,274 + EX31_RS00725 0.41 -0.2 155,332 + EX31_RS00725 0.45 +0.3 155,332 + EX31_RS00725 0.45 -1.8 155,340 + EX31_RS00725 0.46 +0.7 155,576 + EX31_RS00725 0.63 +2.4 155,576 + EX31_RS00725 0.63 -0.4 155,630 + EX31_RS00725 0.67 +0.5 156,047 + +0.4 156,099 + -1.5 156,225 + -0.3 156,225 + -0.4 156,225 + -0.6 156,225 + +0.8 156,225 + -1.7 156,225 + +0.3 156,225 + -0.5 156,260 + EX31_RS00730 0.10 +0.4 156,260 + EX31_RS00730 0.10 +0.0 156,324 + EX31_RS00730 0.14 +0.4 156,440 + EX31_RS00730 0.22 -0.3 156,440 + EX31_RS00730 0.22 +0.2 156,506 + EX31_RS00730 0.27 +0.1 156,506 + EX31_RS00730 0.27 -0.6 156,670 + EX31_RS00730 0.38 -0.2 156,670 + EX31_RS00730 0.38 +0.3 156,670 + EX31_RS00730 0.38 +0.7 156,981 + EX31_RS00730 0.59 +0.7 156,981 + EX31_RS00730 0.59 +0.4 156,981 + EX31_RS00730 0.59 +0.3 157,000 + EX31_RS00730 0.60 +0.3 157,239 + EX31_RS00730 0.77 +0.0 157,290 + EX31_RS00730 0.80 -0.8 157,290 + EX31_RS00730 0.80 +0.2 157,291 - EX31_RS00730 0.80 +0.7 157,469 + -1.2 157,581 + +0.9 157,581 + -0.0 157,581 + +0.4 157,582 - -1.1 157,589 + -0.6 157,599 + -0.8 157,599 + +0.6 157,599 + -0.4 157,599 + +0.9 157,599 + -0.1 157,599 + +1.1 157,599 + +1.1 157,599 + +0.1 157,599 + +0.9 157,599 + +1.2 157,599 + +0.2 157,599 + -0.3 157,599 + +0.7 157,599 + -0.4 157,599 + +0.7 157,599 + +0.6 157,599 + -0.0 157,599 + -0.1 157,599 + +0.0 157,599 + +0.3 157,599 + -0.2 157,599 + -1.2 157,599 + +0.6 157,600 - +0.5 157,600 - -0.1 157,600 - +0.8 157,600 - -1.4 157,641 - -0.0 157,648 + -0.1 157,649 - -0.8 157,698 - -0.5 157,743 - -0.8 157,743 - +0.4 157,747 - +0.1 157,752 + +0.4 157,753 - +0.1 157,762 - +0.8 157,792 - +0.4 157,792 - +0.7 157,792 - +0.9 157,792 - +0.2 157,792 - -0.1 157,797 + +0.8 157,797 + +1.5 157,856 - -0.2 157,994 - +1.6 157,994 - -0.5 157,994 - +2.1 157,994 - +0.5 157,994 - +0.1 157,994 - +0.9 158,021 - -1.0 158,080 - -0.1 158,080 - +0.4 158,095 + -0.4 158,098 + -1.3 158,099 - +0.3 158,100 + -0.1 158,100 + +0.7 158,135 + -0.5 158,136 - +1.1 158,206 - +1.6 158,223 - -0.3 158,297 + +0.6 158,335 + +0.4 158,335 + +0.4 158,335 + -0.2 158,336 - -1.0 158,378 + EX31_RS00735 0.13 -0.0 158,378 + EX31_RS00735 0.13 +1.4 158,455 - EX31_RS00735 0.20 -2.2 158,460 - EX31_RS00735 0.21 -0.5
Or see this region's nucleotide sequence