Strain Fitness in Rahnella sp. WP5 around EX31_RS19335

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19330 and EX31_RS19335 are separated by 67 nucleotidesEX31_RS19335 and EX31_RS19340 overlap by 16 nucleotidesEX31_RS19340 and EX31_RS19345 overlap by 1 nucleotides EX31_RS19330: EX31_RS19330 - catalase, at 491,254 to 492,693 _RS19330 EX31_RS19335: EX31_RS19335 - o-succinylbenzoate--CoA ligase, at 492,761 to 494,134 _RS19335 EX31_RS19340: EX31_RS19340 - o-succinylbenzoate synthase, at 494,119 to 495,120 _RS19340 EX31_RS19345: EX31_RS19345 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 495,120 to 495,977 _RS19345 Position (kb) 492 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 491.829 kb on + strand, within EX31_RS19330at 491.829 kb on + strand, within EX31_RS19330at 491.850 kb on + strand, within EX31_RS19330at 491.851 kb on - strand, within EX31_RS19330at 491.851 kb on - strand, within EX31_RS19330at 491.863 kb on - strand, within EX31_RS19330at 491.992 kb on + strand, within EX31_RS19330at 491.992 kb on + strand, within EX31_RS19330at 491.992 kb on + strand, within EX31_RS19330at 491.992 kb on + strand, within EX31_RS19330at 491.993 kb on - strand, within EX31_RS19330at 491.993 kb on - strand, within EX31_RS19330at 492.076 kb on + strand, within EX31_RS19330at 492.076 kb on + strand, within EX31_RS19330at 492.076 kb on + strand, within EX31_RS19330at 492.076 kb on + strand, within EX31_RS19330at 492.076 kb on + strand, within EX31_RS19330at 492.077 kb on - strand, within EX31_RS19330at 492.169 kb on + strand, within EX31_RS19330at 492.169 kb on + strand, within EX31_RS19330at 492.182 kb on + strand, within EX31_RS19330at 492.182 kb on + strand, within EX31_RS19330at 492.183 kb on - strand, within EX31_RS19330at 492.183 kb on - strand, within EX31_RS19330at 492.212 kb on + strand, within EX31_RS19330at 492.212 kb on + strand, within EX31_RS19330at 492.212 kb on + strand, within EX31_RS19330at 492.212 kb on + strand, within EX31_RS19330at 492.212 kb on + strand, within EX31_RS19330at 492.212 kb on + strand, within EX31_RS19330at 492.212 kb on + strand, within EX31_RS19330at 492.213 kb on - strand, within EX31_RS19330at 492.213 kb on - strand, within EX31_RS19330at 492.213 kb on - strand, within EX31_RS19330at 492.213 kb on - strand, within EX31_RS19330at 492.213 kb on - strand, within EX31_RS19330at 492.243 kb on + strand, within EX31_RS19330at 492.243 kb on + strand, within EX31_RS19330at 492.243 kb on + strand, within EX31_RS19330at 492.243 kb on + strand, within EX31_RS19330at 492.243 kb on + strand, within EX31_RS19330at 492.243 kb on + strand, within EX31_RS19330at 492.244 kb on - strand, within EX31_RS19330at 492.269 kb on - strand, within EX31_RS19330at 492.299 kb on + strand, within EX31_RS19330at 492.345 kb on + strand, within EX31_RS19330at 492.346 kb on - strand, within EX31_RS19330at 492.346 kb on - strand, within EX31_RS19330at 492.349 kb on + strand, within EX31_RS19330at 492.349 kb on + strand, within EX31_RS19330at 492.350 kb on - strand, within EX31_RS19330at 492.381 kb on + strand, within EX31_RS19330at 492.403 kb on + strand, within EX31_RS19330at 492.403 kb on + strand, within EX31_RS19330at 492.403 kb on + strand, within EX31_RS19330at 492.403 kb on + strand, within EX31_RS19330at 492.403 kb on + strand, within EX31_RS19330at 492.404 kb on - strand, within EX31_RS19330at 492.404 kb on - strand, within EX31_RS19330at 492.404 kb on - strand, within EX31_RS19330at 492.511 kb on + strand, within EX31_RS19330at 492.511 kb on + strand, within EX31_RS19330at 492.511 kb on + strand, within EX31_RS19330at 492.511 kb on + strand, within EX31_RS19330at 492.511 kb on + strand, within EX31_RS19330at 492.512 kb on - strand, within EX31_RS19330at 492.512 kb on - strand, within EX31_RS19330at 492.512 kb on - strand, within EX31_RS19330at 492.567 kb on + strandat 492.567 kb on + strandat 492.567 kb on + strandat 492.567 kb on + strandat 492.568 kb on - strandat 492.568 kb on - strandat 492.568 kb on - strandat 492.568 kb on - strandat 492.640 kb on + strandat 492.640 kb on + strandat 492.640 kb on + strandat 492.640 kb on + strandat 492.641 kb on - strandat 492.641 kb on - strandat 492.641 kb on - strandat 492.641 kb on - strandat 492.642 kb on + strandat 492.737 kb on + strandat 492.738 kb on - strandat 492.744 kb on + strandat 492.762 kb on + strandat 492.847 kb on - strandat 492.847 kb on - strandat 492.877 kb on + strandat 492.906 kb on + strand, within EX31_RS19335at 492.906 kb on + strand, within EX31_RS19335at 492.906 kb on + strand, within EX31_RS19335at 492.906 kb on + strand, within EX31_RS19335at 492.907 kb on - strand, within EX31_RS19335at 492.907 kb on - strand, within EX31_RS19335at 493.013 kb on + strand, within EX31_RS19335at 493.013 kb on + strand, within EX31_RS19335at 493.014 kb on - strand, within EX31_RS19335at 493.014 kb on - strand, within EX31_RS19335at 493.066 kb on + strand, within EX31_RS19335at 493.066 kb on + strand, within EX31_RS19335at 493.067 kb on - strand, within EX31_RS19335at 493.157 kb on + strand, within EX31_RS19335at 493.158 kb on - strand, within EX31_RS19335at 493.158 kb on - strand, within EX31_RS19335at 493.158 kb on - strand, within EX31_RS19335at 493.177 kb on - strand, within EX31_RS19335at 493.189 kb on + strand, within EX31_RS19335at 493.189 kb on + strand, within EX31_RS19335at 493.190 kb on - strand, within EX31_RS19335at 493.247 kb on + strand, within EX31_RS19335at 493.247 kb on + strand, within EX31_RS19335at 493.334 kb on + strand, within EX31_RS19335at 493.334 kb on + strand, within EX31_RS19335at 493.335 kb on - strand, within EX31_RS19335at 493.335 kb on - strand, within EX31_RS19335at 493.589 kb on + strand, within EX31_RS19335at 493.597 kb on + strand, within EX31_RS19335at 493.597 kb on + strand, within EX31_RS19335at 493.597 kb on + strand, within EX31_RS19335at 493.603 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.664 kb on - strand, within EX31_RS19335at 493.664 kb on - strand, within EX31_RS19335at 493.720 kb on + strand, within EX31_RS19335at 493.783 kb on + strand, within EX31_RS19335at 493.817 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.908 kb on - strand, within EX31_RS19335at 493.921 kb on - strand, within EX31_RS19335at 494.027 kb on + strandat 494.050 kb on + strandat 494.050 kb on + strandat 494.051 kb on - strandat 494.428 kb on - strand, within EX31_RS19340at 494.649 kb on + strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.750 kb on + strand, within EX31_RS19340at 494.821 kb on + strand, within EX31_RS19340at 494.863 kb on + strand, within EX31_RS19340at 494.863 kb on + strand, within EX31_RS19340at 494.967 kb on + strand, within EX31_RS19340at 494.967 kb on + strand, within EX31_RS19340at 494.968 kb on - strand, within EX31_RS19340at 494.968 kb on - strand, within EX31_RS19340at 494.968 kb on - strand, within EX31_RS19340at 495.096 kb on - strandat 495.122 kb on - strandat 495.128 kb on + strandat 495.129 kb on - strandat 495.129 kb on - strandat 495.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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491,829 + EX31_RS19330 0.40 -0.2
491,829 + EX31_RS19330 0.40 +0.5
491,850 + EX31_RS19330 0.41 +0.1
491,851 - EX31_RS19330 0.41 -0.1
491,851 - EX31_RS19330 0.41 -1.4
491,863 - EX31_RS19330 0.42 -1.1
491,992 + EX31_RS19330 0.51 -1.0
491,992 + EX31_RS19330 0.51 -0.0
491,992 + EX31_RS19330 0.51 -0.0
491,992 + EX31_RS19330 0.51 -0.0
491,993 - EX31_RS19330 0.51 -0.9
491,993 - EX31_RS19330 0.51 +0.2
492,076 + EX31_RS19330 0.57 -1.0
492,076 + EX31_RS19330 0.57 -0.4
492,076 + EX31_RS19330 0.57 +0.1
492,076 + EX31_RS19330 0.57 -0.7
492,076 + EX31_RS19330 0.57 +0.6
492,077 - EX31_RS19330 0.57 -0.8
492,169 + EX31_RS19330 0.64 +0.2
492,169 + EX31_RS19330 0.64 -0.9
492,182 + EX31_RS19330 0.64 -0.9
492,182 + EX31_RS19330 0.64 +0.9
492,183 - EX31_RS19330 0.65 +0.7
492,183 - EX31_RS19330 0.65 -0.6
492,212 + EX31_RS19330 0.67 -0.8
492,212 + EX31_RS19330 0.67 +0.1
492,212 + EX31_RS19330 0.67 -0.9
492,212 + EX31_RS19330 0.67 +1.2
492,212 + EX31_RS19330 0.67 -0.7
492,212 + EX31_RS19330 0.67 -0.3
492,212 + EX31_RS19330 0.67 +0.9
492,213 - EX31_RS19330 0.67 +1.0
492,213 - EX31_RS19330 0.67 -0.7
492,213 - EX31_RS19330 0.67 -0.3
492,213 - EX31_RS19330 0.67 +0.1
492,213 - EX31_RS19330 0.67 -0.0
492,243 + EX31_RS19330 0.69 -0.3
492,243 + EX31_RS19330 0.69 -1.3
492,243 + EX31_RS19330 0.69 -0.0
492,243 + EX31_RS19330 0.69 -0.3
492,243 + EX31_RS19330 0.69 -0.2
492,243 + EX31_RS19330 0.69 +0.3
492,244 - EX31_RS19330 0.69 -2.1
492,269 - EX31_RS19330 0.70 -0.4
492,299 + EX31_RS19330 0.73 +0.7
492,345 + EX31_RS19330 0.76 +0.5
492,346 - EX31_RS19330 0.76 +0.2
492,346 - EX31_RS19330 0.76 -0.4
492,349 + EX31_RS19330 0.76 +0.1
492,349 + EX31_RS19330 0.76 +0.2
492,350 - EX31_RS19330 0.76 +0.1
492,381 + EX31_RS19330 0.78 -1.2
492,403 + EX31_RS19330 0.80 +0.6
492,403 + EX31_RS19330 0.80 -0.1
492,403 + EX31_RS19330 0.80 +0.0
492,403 + EX31_RS19330 0.80 +0.4
492,403 + EX31_RS19330 0.80 -0.1
492,404 - EX31_RS19330 0.80 -0.3
492,404 - EX31_RS19330 0.80 +0.0
492,404 - EX31_RS19330 0.80 -0.3
492,511 + EX31_RS19330 0.87 +0.1
492,511 + EX31_RS19330 0.87 -0.9
492,511 + EX31_RS19330 0.87 -0.6
492,511 + EX31_RS19330 0.87 +0.1
492,511 + EX31_RS19330 0.87 +0.5
492,512 - EX31_RS19330 0.87 +1.5
492,512 - EX31_RS19330 0.87 +0.1
492,512 - EX31_RS19330 0.87 -0.5
492,567 + +0.4
492,567 + +0.3
492,567 + +0.6
492,567 + -0.1
492,568 - +0.5
492,568 - +0.4
492,568 - -0.2
492,568 - -0.1
492,640 + -0.6
492,640 + +1.0
492,640 + -1.0
492,640 + -0.4
492,641 - +0.1
492,641 - -0.4
492,641 - +0.0
492,641 - +0.3
492,642 + +1.5
492,737 + -0.1
492,738 - -0.1
492,744 + +2.4
492,762 + -2.3
492,847 - +0.8
492,847 - -0.5
492,877 + -0.9
492,906 + EX31_RS19335 0.11 +0.2
492,906 + EX31_RS19335 0.11 +0.7
492,906 + EX31_RS19335 0.11 -0.2
492,906 + EX31_RS19335 0.11 -1.5
492,907 - EX31_RS19335 0.11 +0.5
492,907 - EX31_RS19335 0.11 +0.6
493,013 + EX31_RS19335 0.18 -0.4
493,013 + EX31_RS19335 0.18 -0.9
493,014 - EX31_RS19335 0.18 +0.1
493,014 - EX31_RS19335 0.18 +0.3
493,066 + EX31_RS19335 0.22 -0.0
493,066 + EX31_RS19335 0.22 -0.4
493,067 - EX31_RS19335 0.22 -0.2
493,157 + EX31_RS19335 0.29 -0.3
493,158 - EX31_RS19335 0.29 -1.2
493,158 - EX31_RS19335 0.29 +0.9
493,158 - EX31_RS19335 0.29 -0.5
493,177 - EX31_RS19335 0.30 -1.1
493,189 + EX31_RS19335 0.31 -0.3
493,189 + EX31_RS19335 0.31 -2.3
493,190 - EX31_RS19335 0.31 +0.6
493,247 + EX31_RS19335 0.35 +0.5
493,247 + EX31_RS19335 0.35 -0.7
493,334 + EX31_RS19335 0.42 -0.2
493,334 + EX31_RS19335 0.42 +0.3
493,335 - EX31_RS19335 0.42 -0.2
493,335 - EX31_RS19335 0.42 -1.2
493,589 + EX31_RS19335 0.60 -1.1
493,597 + EX31_RS19335 0.61 -0.5
493,597 + EX31_RS19335 0.61 -0.6
493,597 + EX31_RS19335 0.61 +0.4
493,603 + EX31_RS19335 0.61 +0.6
493,663 + EX31_RS19335 0.66 -0.6
493,663 + EX31_RS19335 0.66 -0.6
493,663 + EX31_RS19335 0.66 +1.6
493,663 + EX31_RS19335 0.66 -1.7
493,664 - EX31_RS19335 0.66 -1.0
493,664 - EX31_RS19335 0.66 -1.8
493,720 + EX31_RS19335 0.70 -0.5
493,783 + EX31_RS19335 0.74 -0.3
493,817 + EX31_RS19335 0.77 +0.1
493,856 + EX31_RS19335 0.80 -0.1
493,856 + EX31_RS19335 0.80 -1.1
493,856 + EX31_RS19335 0.80 +0.1
493,856 + EX31_RS19335 0.80 -0.3
493,857 - EX31_RS19335 0.80 -0.3
493,857 - EX31_RS19335 0.80 -0.9
493,857 - EX31_RS19335 0.80 -0.5
493,857 - EX31_RS19335 0.80 -1.6
493,857 - EX31_RS19335 0.80 -0.1
493,908 - EX31_RS19335 0.83 -0.8
493,921 - EX31_RS19335 0.84 -0.9
494,027 + -0.9
494,050 + -0.1
494,050 + -0.0
494,051 - +0.5
494,428 - EX31_RS19340 0.31 -0.1
494,649 + EX31_RS19340 0.53 -0.7
494,650 - EX31_RS19340 0.53 -0.8
494,650 - EX31_RS19340 0.53 -0.1
494,650 - EX31_RS19340 0.53 -0.3
494,650 - EX31_RS19340 0.53 -0.4
494,650 - EX31_RS19340 0.53 -0.0
494,750 + EX31_RS19340 0.63 -0.6
494,821 + EX31_RS19340 0.70 -0.2
494,863 + EX31_RS19340 0.74 -0.6
494,863 + EX31_RS19340 0.74 -0.8
494,967 + EX31_RS19340 0.85 +1.2
494,967 + EX31_RS19340 0.85 +0.6
494,968 - EX31_RS19340 0.85 +1.6
494,968 - EX31_RS19340 0.85 +1.7
494,968 - EX31_RS19340 0.85 -1.0
495,096 - -0.6
495,122 - -1.1
495,128 + -0.9
495,129 - +0.6
495,129 - -0.1
495,129 - -0.8

Or see this region's nucleotide sequence