Strain Fitness in Rahnella sp. WP5 around EX31_RS17770

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17760 and EX31_RS17765 are separated by 10 nucleotidesEX31_RS17765 and EX31_RS17770 overlap by 14 nucleotidesEX31_RS17770 and EX31_RS17775 are separated by 371 nucleotides EX31_RS17760: EX31_RS17760 - EmmdR/YeeO family multidrug/toxin efflux MATE transporter, at 107,090 to 108,520 _RS17760 EX31_RS17765: EX31_RS17765 - response regulator, at 108,531 to 109,220 _RS17765 EX31_RS17770: EX31_RS17770 - sensor histidine kinase, at 109,207 to 110,874 _RS17770 EX31_RS17775: EX31_RS17775 - 2-hydroxycarboxylate transporter family protein, at 111,246 to 112,610 _RS17775 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2at 108.253 kb on + strand, within EX31_RS17760at 108.254 kb on - strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.326 kb on + strand, within EX31_RS17760at 108.327 kb on - strand, within EX31_RS17760at 108.327 kb on - strand, within EX31_RS17760at 108.327 kb on - strand, within EX31_RS17760at 108.327 kb on - strand, within EX31_RS17760at 108.327 kb on - strand, within EX31_RS17760at 108.327 kb on - strand, within EX31_RS17760at 108.334 kb on + strand, within EX31_RS17760at 108.371 kb on + strand, within EX31_RS17760at 108.523 kb on + strandat 108.545 kb on - strandat 108.575 kb on - strandat 108.575 kb on - strandat 108.702 kb on - strand, within EX31_RS17765at 108.702 kb on - strand, within EX31_RS17765at 108.723 kb on + strand, within EX31_RS17765at 108.724 kb on - strand, within EX31_RS17765at 108.746 kb on + strand, within EX31_RS17765at 108.798 kb on + strand, within EX31_RS17765at 108.799 kb on - strand, within EX31_RS17765at 108.799 kb on - strand, within EX31_RS17765at 108.904 kb on + strand, within EX31_RS17765at 108.904 kb on + strand, within EX31_RS17765at 108.904 kb on + strand, within EX31_RS17765at 108.905 kb on - strand, within EX31_RS17765at 108.905 kb on - strand, within EX31_RS17765at 108.942 kb on - strand, within EX31_RS17765at 109.039 kb on + strand, within EX31_RS17765at 109.039 kb on + strand, within EX31_RS17765at 109.039 kb on + strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.040 kb on - strand, within EX31_RS17765at 109.044 kb on - strand, within EX31_RS17765at 109.139 kb on + strand, within EX31_RS17765at 109.140 kb on - strand, within EX31_RS17765at 109.156 kb on + strandat 109.157 kb on - strandat 109.194 kb on + strandat 109.195 kb on - strandat 109.195 kb on - strandat 109.296 kb on + strandat 109.367 kb on + strandat 109.367 kb on + strandat 109.367 kb on + strandat 109.368 kb on - strandat 109.368 kb on - strandat 109.368 kb on - strandat 109.368 kb on - strandat 109.368 kb on - strandat 109.517 kb on + strand, within EX31_RS17770at 109.517 kb on + strand, within EX31_RS17770at 109.517 kb on + strand, within EX31_RS17770at 109.517 kb on + strand, within EX31_RS17770at 109.517 kb on + strand, within EX31_RS17770at 109.518 kb on - strand, within EX31_RS17770at 109.518 kb on - strand, within EX31_RS17770at 109.518 kb on - strand, within EX31_RS17770at 109.631 kb on + strand, within EX31_RS17770at 109.631 kb on + strand, within EX31_RS17770at 109.632 kb on - strand, within EX31_RS17770at 109.632 kb on - strand, within EX31_RS17770at 109.632 kb on - strand, within EX31_RS17770at 109.632 kb on - strand, within EX31_RS17770at 109.637 kb on - strand, within EX31_RS17770at 109.637 kb on - strand, within EX31_RS17770at 109.637 kb on - strand, within EX31_RS17770at 109.706 kb on - strand, within EX31_RS17770at 109.786 kb on - strand, within EX31_RS17770at 109.787 kb on + strand, within EX31_RS17770at 109.805 kb on + strand, within EX31_RS17770at 109.805 kb on + strand, within EX31_RS17770at 109.815 kb on + strand, within EX31_RS17770at 109.816 kb on - strand, within EX31_RS17770at 109.816 kb on - strand, within EX31_RS17770at 109.903 kb on + strand, within EX31_RS17770at 110.571 kb on - strand, within EX31_RS17770at 110.571 kb on - strand, within EX31_RS17770at 110.591 kb on - strand, within EX31_RS17770at 110.599 kb on - strand, within EX31_RS17770at 110.616 kb on + strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.618 kb on + strand, within EX31_RS17770at 110.619 kb on - strand, within EX31_RS17770at 110.619 kb on - strand, within EX31_RS17770at 110.619 kb on - strand, within EX31_RS17770at 110.654 kb on - strand, within EX31_RS17770at 111.311 kb on - strandat 111.400 kb on + strand, within EX31_RS17775at 111.561 kb on + strand, within EX31_RS17775at 111.561 kb on + strand, within EX31_RS17775at 111.609 kb on + strand, within EX31_RS17775at 111.610 kb on - strand, within EX31_RS17775at 111.610 kb on - strand, within EX31_RS17775at 111.612 kb on - strand, within EX31_RS17775at 111.612 kb on - strand, within EX31_RS17775at 111.630 kb on + strand, within EX31_RS17775at 111.630 kb on + strand, within EX31_RS17775at 111.630 kb on + strand, within EX31_RS17775at 111.636 kb on + strand, within EX31_RS17775at 111.636 kb on + strand, within EX31_RS17775at 111.636 kb on + strand, within EX31_RS17775at 111.637 kb on - strand, within EX31_RS17775at 111.707 kb on + strand, within EX31_RS17775at 111.707 kb on + strand, within EX31_RS17775

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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108,253 + EX31_RS17760 0.81 +0.3
108,254 - EX31_RS17760 0.81 +0.1
108,326 + EX31_RS17760 0.86 +0.5
108,326 + EX31_RS17760 0.86 -0.4
108,326 + EX31_RS17760 0.86 -0.1
108,326 + EX31_RS17760 0.86 +0.6
108,326 + EX31_RS17760 0.86 +0.2
108,326 + EX31_RS17760 0.86 +0.2
108,326 + EX31_RS17760 0.86 +0.2
108,326 + EX31_RS17760 0.86 +0.6
108,326 + EX31_RS17760 0.86 +0.3
108,326 + EX31_RS17760 0.86 -0.9
108,326 + EX31_RS17760 0.86 -1.2
108,327 - EX31_RS17760 0.86 +0.4
108,327 - EX31_RS17760 0.86 -0.1
108,327 - EX31_RS17760 0.86 -0.6
108,327 - EX31_RS17760 0.86 +0.9
108,327 - EX31_RS17760 0.86 -0.2
108,327 - EX31_RS17760 0.86 +1.1
108,334 + EX31_RS17760 0.87 +1.2
108,371 + EX31_RS17760 0.90 -0.4
108,523 + +0.2
108,545 - +0.2
108,575 - -1.5
108,575 - +0.0
108,702 - EX31_RS17765 0.25 -0.6
108,702 - EX31_RS17765 0.25 +0.2
108,723 + EX31_RS17765 0.28 -0.5
108,724 - EX31_RS17765 0.28 -1.1
108,746 + EX31_RS17765 0.31 -0.5
108,798 + EX31_RS17765 0.39 -1.1
108,799 - EX31_RS17765 0.39 +0.8
108,799 - EX31_RS17765 0.39 -0.4
108,904 + EX31_RS17765 0.54 +0.4
108,904 + EX31_RS17765 0.54 -1.1
108,904 + EX31_RS17765 0.54 +0.1
108,905 - EX31_RS17765 0.54 -0.6
108,905 - EX31_RS17765 0.54 +0.7
108,942 - EX31_RS17765 0.60 +0.1
109,039 + EX31_RS17765 0.74 -0.0
109,039 + EX31_RS17765 0.74 -2.1
109,039 + EX31_RS17765 0.74 -0.2
109,040 - EX31_RS17765 0.74 -1.0
109,040 - EX31_RS17765 0.74 +0.3
109,040 - EX31_RS17765 0.74 +0.9
109,040 - EX31_RS17765 0.74 +1.1
109,040 - EX31_RS17765 0.74 +0.0
109,040 - EX31_RS17765 0.74 -0.7
109,040 - EX31_RS17765 0.74 +0.5
109,040 - EX31_RS17765 0.74 +0.3
109,040 - EX31_RS17765 0.74 +0.3
109,044 - EX31_RS17765 0.74 -0.3
109,139 + EX31_RS17765 0.88 +0.2
109,140 - EX31_RS17765 0.88 +0.8
109,156 + +0.5
109,157 - -2.2
109,194 + +0.5
109,195 - +0.4
109,195 - -1.3
109,296 + +0.2
109,367 + +0.1
109,367 + -0.9
109,367 + -1.1
109,368 - +0.4
109,368 - +0.3
109,368 - +0.8
109,368 - -0.1
109,368 - -0.0
109,517 + EX31_RS17770 0.19 -0.2
109,517 + EX31_RS17770 0.19 -0.1
109,517 + EX31_RS17770 0.19 -0.7
109,517 + EX31_RS17770 0.19 +0.3
109,517 + EX31_RS17770 0.19 -1.1
109,518 - EX31_RS17770 0.19 -0.2
109,518 - EX31_RS17770 0.19 +0.2
109,518 - EX31_RS17770 0.19 +0.2
109,631 + EX31_RS17770 0.25 -0.1
109,631 + EX31_RS17770 0.25 -0.5
109,632 - EX31_RS17770 0.25 +0.7
109,632 - EX31_RS17770 0.25 +0.2
109,632 - EX31_RS17770 0.25 +1.1
109,632 - EX31_RS17770 0.25 +0.3
109,637 - EX31_RS17770 0.26 -0.0
109,637 - EX31_RS17770 0.26 +0.3
109,637 - EX31_RS17770 0.26 +1.0
109,706 - EX31_RS17770 0.30 +0.7
109,786 - EX31_RS17770 0.35 +0.7
109,787 + EX31_RS17770 0.35 -0.2
109,805 + EX31_RS17770 0.36 -1.2
109,805 + EX31_RS17770 0.36 +0.9
109,815 + EX31_RS17770 0.36 -0.9
109,816 - EX31_RS17770 0.37 +1.4
109,816 - EX31_RS17770 0.37 -0.3
109,903 + EX31_RS17770 0.42 +1.1
110,571 - EX31_RS17770 0.82 +0.5
110,571 - EX31_RS17770 0.82 -1.8
110,591 - EX31_RS17770 0.83 +1.5
110,599 - EX31_RS17770 0.83 -0.6
110,616 + EX31_RS17770 0.84 -0.1
110,617 - EX31_RS17770 0.85 -0.3
110,617 - EX31_RS17770 0.85 +0.2
110,617 - EX31_RS17770 0.85 +0.7
110,617 - EX31_RS17770 0.85 +0.3
110,618 + EX31_RS17770 0.85 -0.5
110,619 - EX31_RS17770 0.85 -0.1
110,619 - EX31_RS17770 0.85 -0.4
110,619 - EX31_RS17770 0.85 +0.9
110,654 - EX31_RS17770 0.87 -0.6
111,311 - -0.3
111,400 + EX31_RS17775 0.11 +2.2
111,561 + EX31_RS17775 0.23 -0.7
111,561 + EX31_RS17775 0.23 +0.1
111,609 + EX31_RS17775 0.27 +0.6
111,610 - EX31_RS17775 0.27 +0.5
111,610 - EX31_RS17775 0.27 +0.8
111,612 - EX31_RS17775 0.27 -1.0
111,612 - EX31_RS17775 0.27 +1.5
111,630 + EX31_RS17775 0.28 -0.0
111,630 + EX31_RS17775 0.28 -0.3
111,630 + EX31_RS17775 0.28 -0.1
111,636 + EX31_RS17775 0.29 +0.7
111,636 + EX31_RS17775 0.29 -0.3
111,636 + EX31_RS17775 0.29 -0.7
111,637 - EX31_RS17775 0.29 -0.3
111,707 + EX31_RS17775 0.34 +1.1
111,707 + EX31_RS17775 0.34 -1.8

Or see this region's nucleotide sequence