Strain Fitness in Rahnella sp. WP5 around EX31_RS17090

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
8,539	-		EX31_RS17080	0.74	-0.4
8,539	-		EX31_RS17080	0.74	+0.3
8,539	-		EX31_RS17080	0.74	-0.6
8,539	-		EX31_RS17080	0.74	-0.3
8,549	+		EX31_RS17080	0.75	-0.0
8,550	-		EX31_RS17080	0.75	+0.0
8,589	+		EX31_RS17080	0.77	-0.7
8,590	-		EX31_RS17080	0.77	+0.9
8,590	-		EX31_RS17080	0.77	+0.4
8,590	-		EX31_RS17080	0.77	+1.1
8,590	-		EX31_RS17080	0.77	-0.2
8,607	-		EX31_RS17080	0.78	+0.3
8,619	+		EX31_RS17080	0.78	+0.3
8,619	+		EX31_RS17080	0.78	-0.3
8,620	-		EX31_RS17080	0.78	-0.3
8,620	-		EX31_RS17080	0.78	+0.2
8,620	-		EX31_RS17080	0.78	+0.4
8,820	+		EX31_RS17080	0.89	+0.4
8,821	-		EX31_RS17080	0.89	+0.3
8,821	-		EX31_RS17080	0.89	+0.2
8,821	-		EX31_RS17080	0.89	+0.1
8,821	-		EX31_RS17080	0.89	-0.4
8,826	+		EX31_RS17080	0.89	+0.0
8,826	+		EX31_RS17080	0.89	+0.1
8,827	-		EX31_RS17080	0.89	+1.4
8,849	-				+1.1
8,859	-				+0.4
8,859	-				+0.2
8,877	+				+0.1
8,877	+				-0.6
8,877	+				+0.4
8,877	+				+0.7
8,877	+				-1.0
8,877	+				+0.1
8,878	-				+0.8
8,878	-				-0.8
8,878	-				-0.6
8,878	-				+0.1
8,878	-				+0.1
8,878	-				+0.1
8,878	-				-0.1
8,878	-				-0.8
8,878	-				-0.1
8,906	+				-0.2
8,922	+				+0.2
8,988	+				-0.6
8,989	-				+1.0
8,989	-				-0.4
8,989	-				-2.4
9,006	+				+0.3
9,006	+				+0.7
9,007	-				-0.0
9,007	-				-0.3
9,007	-				+0.5
9,039	+				-0.2
9,039	+				+2.2
9,039	+				+0.5
9,039	+				-0.1
9,040	-				+0.1
9,040	-				-0.0
9,040	-				+0.1
9,040	-				-0.6
9,040	-				+0.2
9,040	-				-0.5
9,040	-				+0.8
9,057	-				+0.2
9,057	-				-0.4
9,060	+				+1.0
9,061	-				+1.4
9,067	-				+0.2
9,139	+				+0.2
9,140	-				-0.2
9,140	-				-0.3
9,213	+		EX31_RS17085	0.32	-0.4
9,213	+		EX31_RS17085	0.32	+0.7
9,241	-		EX31_RS17085	0.42	+0.1
9,241	-		EX31_RS17085	0.42	+1.2
9,241	-		EX31_RS17085	0.42	+1.2
9,272	-		EX31_RS17085	0.54	-0.9
9,272	-		EX31_RS17085	0.54	+0.9
9,295	-		EX31_RS17085	0.62	+1.1
9,295	-		EX31_RS17085	0.62	-0.7
9,295	-		EX31_RS17085	0.62	-0.9
9,298	+		EX31_RS17085	0.63	-0.6
9,299	-		EX31_RS17085	0.63	-0.3
9,299	-		EX31_RS17085	0.63	+0.5
9,299	-		EX31_RS17085	0.63	+0.2
9,299	-		EX31_RS17085	0.63	+0.3
9,299	-		EX31_RS17085	0.63	-1.6
9,299	-		EX31_RS17085	0.63	-0.2
9,370	+		EX31_RS17085	0.90	-0.6
9,444	+				+0.2
9,460	+				+0.5
9,460	+				-0.1
9,461	-				-0.1
9,476	+				-1.0
9,476	+				-0.0
9,476	+				+0.5
9,476	+				-0.8
9,476	+				+0.5
9,476	+				-0.9
9,477	-				-0.7
9,477	-				-0.5
9,477	-				-0.6
9,477	-				-1.5
9,525	-				-2.4
9,527	+				-0.8
9,528	-				+0.5
9,538	+				+0.4
9,560	-				-0.5
9,560	-				-0.1
9,620	+				-0.5
9,620	+				+0.2
9,620	+				-0.2
9,621	-				+0.3
9,621	-				-0.5
9,691	+		EX31_RS17090	0.15	+0.4
9,691	+		EX31_RS17090	0.15	+0.5
9,692	-		EX31_RS17090	0.15	+0.3
9,692	-		EX31_RS17090	0.15	+0.2
9,712	+		EX31_RS17090	0.16	+0.7
9,712	+		EX31_RS17090	0.16	+0.8
9,713	-		EX31_RS17090	0.16	+0.8
9,713	-		EX31_RS17090	0.16	-0.1
9,723	-		EX31_RS17090	0.17	+0.3
9,723	-		EX31_RS17090	0.17	+0.3
9,747	+		EX31_RS17090	0.19	+0.5
9,748	-		EX31_RS17090	0.19	+1.2
9,748	-		EX31_RS17090	0.19	+0.6
9,748	-		EX31_RS17090	0.19	-0.0
9,748	-		EX31_RS17090	0.19	-0.2
9,748	-		EX31_RS17090	0.19	+0.4
9,748	-		EX31_RS17090	0.19	-0.0
9,751	+		EX31_RS17090	0.19	-1.2
9,751	+		EX31_RS17090	0.19	-0.3
9,751	+		EX31_RS17090	0.19	-3.1
9,751	+		EX31_RS17090	0.19	+0.6
9,751	+		EX31_RS17090	0.19	-0.1
9,751	+		EX31_RS17090	0.19	+0.4
9,751	+		EX31_RS17090	0.19	-0.1
9,751	+		EX31_RS17090	0.19	+1.0
9,751	+		EX31_RS17090	0.19	+0.9
9,751	+		EX31_RS17090	0.19	-0.7
9,751	+		EX31_RS17090	0.19	+0.3
9,751	+		EX31_RS17090	0.19	+0.5
9,751	+		EX31_RS17090	0.19	-0.9
9,751	+		EX31_RS17090	0.19	+0.2
9,751	+		EX31_RS17090	0.19	-0.4
9,752	-		EX31_RS17090	0.19	-1.3
9,752	-		EX31_RS17090	0.19	+0.4
9,752	-		EX31_RS17090	0.19	-0.9
9,752	-		EX31_RS17090	0.19	-1.0
9,752	-		EX31_RS17090	0.19	+0.8
9,752	-		EX31_RS17090	0.19	+0.0
9,752	-		EX31_RS17090	0.19	-0.2
9,752	-		EX31_RS17090	0.19	+0.5
9,752	-		EX31_RS17090	0.19	-1.1
9,752	-		EX31_RS17090	0.19	+0.3
9,752	-		EX31_RS17090	0.19	-0.2
9,752	-		EX31_RS17090	0.19	-0.8
9,752	-		EX31_RS17090	0.19	-0.9
9,752	-		EX31_RS17090	0.19	-0.2
9,752	-		EX31_RS17090	0.19	-0.1
9,752	-		EX31_RS17090	0.19	+0.6
9,817	+		EX31_RS17090	0.25	-0.7
9,817	+		EX31_RS17090	0.25	-0.1
9,817	+		EX31_RS17090	0.25	-0.8
9,859	+		EX31_RS17090	0.28	-1.4
9,859	+		EX31_RS17090	0.28	+0.3
9,860	-		EX31_RS17090	0.28	+0.5
9,860	-		EX31_RS17090	0.28	-0.4
9,860	-		EX31_RS17090	0.28	-0.3
9,860	-		EX31_RS17090	0.28	-0.3
9,860	-		EX31_RS17090	0.28	-0.1
9,863	+		EX31_RS17090	0.28	+0.5
9,863	+		EX31_RS17090	0.28	-1.1
9,863	+		EX31_RS17090	0.28	-1.0
9,863	+		EX31_RS17090	0.28	-1.0
9,863	+		EX31_RS17090	0.28	-1.2
9,863	+		EX31_RS17090	0.28	-0.6
9,863	+		EX31_RS17090	0.28	-0.6
9,863	+		EX31_RS17090	0.28	+0.4
9,863	+		EX31_RS17090	0.28	-1.0
9,863	+		EX31_RS17090	0.28	+0.9
9,863	+		EX31_RS17090	0.28	-0.1
9,863	+		EX31_RS17090	0.28	-1.4
9,863	+		EX31_RS17090	0.28	-0.8
9,863	+		EX31_RS17090	0.28	-0.2
9,863	+		EX31_RS17090	0.28	-0.5
9,863	+		EX31_RS17090	0.28	+0.3
9,864	-		EX31_RS17090	0.28	+0.4
9,864	-		EX31_RS17090	0.28	+0.4
9,864	-		EX31_RS17090	0.28	-0.6
9,864	-		EX31_RS17090	0.28	-0.0
9,864	-		EX31_RS17090	0.28	+0.1
9,864	-		EX31_RS17090	0.28	+1.5
9,864	-		EX31_RS17090	0.28	+0.9
9,864	-		EX31_RS17090	0.28	+0.9
9,864	-		EX31_RS17090	0.28	-1.6
9,864	-		EX31_RS17090	0.28	-0.7
9,896	+		EX31_RS17090	0.31	+0.0
9,897	-		EX31_RS17090	0.31	-0.5
9,925	+		EX31_RS17090	0.33	-1.9
9,927	+		EX31_RS17090	0.33	+0.3
9,927	+		EX31_RS17090	0.33	-0.3
9,927	+		EX31_RS17090	0.33	-1.5
9,927	+		EX31_RS17090	0.33	+0.4
9,927	+		EX31_RS17090	0.33	+0.1
9,927	+		EX31_RS17090	0.33	+0.3
9,927	+		EX31_RS17090	0.33	-0.5
9,927	+		EX31_RS17090	0.33	+0.2
9,927	+		EX31_RS17090	0.33	-0.2
9,927	+		EX31_RS17090	0.33	+0.0
9,927	+		EX31_RS17090	0.33	+1.3
9,928	-		EX31_RS17090	0.34	+0.3
9,928	-		EX31_RS17090	0.34	-1.1
9,928	-		EX31_RS17090	0.34	-0.1
9,928	-		EX31_RS17090	0.34	+0.1
9,928	-		EX31_RS17090	0.34	+0.1
9,928	-		EX31_RS17090	0.34	-0.5
9,928	-		EX31_RS17090	0.34	-0.5
9,936	+		EX31_RS17090	0.34	+0.2
9,937	-		EX31_RS17090	0.34	-0.1
9,937	-		EX31_RS17090	0.34	-0.7
9,937	-		EX31_RS17090	0.34	+0.1
9,947	+		EX31_RS17090	0.35	-0.1
9,947	+		EX31_RS17090	0.35	+0.7
9,947	+		EX31_RS17090	0.35	+0.7
9,947	+		EX31_RS17090	0.35	+0.4
9,948	-		EX31_RS17090	0.35	+0.1
9,958	+		EX31_RS17090	0.36	+0.3
9,958	+		EX31_RS17090	0.36	-1.2
9,959	-		EX31_RS17090	0.36	+0.9
10,001	+		EX31_RS17090	0.39	+0.3
10,013	+		EX31_RS17090	0.40	+1.2
10,042	+		EX31_RS17090	0.43	+0.0
10,042	+		EX31_RS17090	0.43	-0.4
10,042	+		EX31_RS17090	0.43	-1.1
10,042	+		EX31_RS17090	0.43	+0.7
10,042	+		EX31_RS17090	0.43	-0.4
10,043	-		EX31_RS17090	0.43	+0.6
10,043	-		EX31_RS17090	0.43	+0.1
10,043	-		EX31_RS17090	0.43	+1.0
10,043	-		EX31_RS17090	0.43	-0.6
10,088	-		EX31_RS17090	0.46	-0.0
10,099	+		EX31_RS17090	0.47	-1.8
10,099	+		EX31_RS17090	0.47	-0.5
10,099	+		EX31_RS17090	0.47	-0.4
10,100	-		EX31_RS17090	0.47	-1.2
10,100	-		EX31_RS17090	0.47	+0.9
10,100	-		EX31_RS17090	0.47	+0.3
10,100	-		EX31_RS17090	0.47	-0.2
10,100	-		EX31_RS17090	0.47	-0.3
10,100	-		EX31_RS17090	0.47	-0.2
10,100	-		EX31_RS17090	0.47	+0.3
10,100	-		EX31_RS17090	0.47	-0.8
10,120	+		EX31_RS17090	0.49	+1.0
10,129	-		EX31_RS17090	0.50	+0.2
10,129	-		EX31_RS17090	0.50	+0.6
10,144	+		EX31_RS17090	0.51	+0.0
10,144	+		EX31_RS17090	0.51	+0.4
10,145	-		EX31_RS17090	0.51	-0.4
10,163	+		EX31_RS17090	0.52	-1.2
10,163	+		EX31_RS17090	0.52	+0.2
10,165	+		EX31_RS17090	0.53	-0.8
10,165	+		EX31_RS17090	0.53	+2.0
10,165	+		EX31_RS17090	0.53	+0.4
10,165	+		EX31_RS17090	0.53	-1.4
10,166	-		EX31_RS17090	0.53	+0.4
10,166	-		EX31_RS17090	0.53	-0.0
10,166	-		EX31_RS17090	0.53	-0.6
10,166	-		EX31_RS17090	0.53	+0.1
10,166	-		EX31_RS17090	0.53	-0.2
10,166	-		EX31_RS17090	0.53	+0.3
10,190	+		EX31_RS17090	0.55	-0.3
10,191	-		EX31_RS17090	0.55	-0.7
10,191	-		EX31_RS17090	0.55	+1.2
10,191	-		EX31_RS17090	0.55	+1.3
10,218	+		EX31_RS17090	0.57	-1.0
10,255	+		EX31_RS17090	0.60	+0.5
10,256	-		EX31_RS17090	0.60	-0.2
10,260	+		EX31_RS17090	0.60	-0.9
10,274	+		EX31_RS17090	0.61	-0.6
10,274	+		EX31_RS17090	0.61	-1.0
10,274	+		EX31_RS17090	0.61	+0.6
10,275	-		EX31_RS17090	0.61	+0.8
10,326	-		EX31_RS17090	0.65	-0.1
10,330	-		EX31_RS17090	0.66	-0.7
10,356	+		EX31_RS17090	0.68	+0.5
10,356	+		EX31_RS17090	0.68	+0.3
10,357	-		EX31_RS17090	0.68	-1.0
10,393	+		EX31_RS17090	0.71	-0.5
10,393	+		EX31_RS17090	0.71	-2.1
10,393	+		EX31_RS17090	0.71	+0.6
10,393	+		EX31_RS17090	0.71	-0.3
10,394	-		EX31_RS17090	0.71	-1.7
10,394	-		EX31_RS17090	0.71	-0.9
10,394	-		EX31_RS17090	0.71	-1.1
10,445	+		EX31_RS17090	0.75	+1.3
10,446	-		EX31_RS17090	0.75	-2.2
10,446	-		EX31_RS17090	0.75	+0.0
10,466	-		EX31_RS17090	0.77	+0.1
10,536	+		EX31_RS17090	0.82	+0.6
10,541	+		EX31_RS17090	0.83	-1.1
10,541	+		EX31_RS17090	0.83	+0.3
10,542	-		EX31_RS17090	0.83	-0.5
10,542	-		EX31_RS17090	0.83	+0.9
10,542	-		EX31_RS17090	0.83	+0.6
10,542	-		EX31_RS17090	0.83	-0.6
10,604	+		EX31_RS17090	0.88	-0.2
10,604	+		EX31_RS17090	0.88	+0.4
10,605	-		EX31_RS17090	0.88	+0.1
10,613	+		EX31_RS17090	0.88	-0.7
10,613	+		EX31_RS17090	0.88	+1.1
10,613	+		EX31_RS17090	0.88	+0.2
10,613	+		EX31_RS17090	0.88	+0.9
10,613	+		EX31_RS17090	0.88	+0.4
10,614	-		EX31_RS17090	0.89	+0.1
10,614	-		EX31_RS17090	0.89	+1.5
10,614	-		EX31_RS17090	0.89	+0.6
10,614	-		EX31_RS17090	0.89	+0.1
10,615	+		EX31_RS17090	0.89	+0.1
10,615	+		EX31_RS17090	0.89	+0.1
10,615	+		EX31_RS17090	0.89	-1.7
10,633	+				-0.6
10,634	-				-0.1
10,634	-				+0.1
10,634	-				+0.6
10,668	+				-1.8
10,740	+				-0.3
10,741	-				+2.3
10,788	+				-0.7
10,788	+				-1.5
10,788	+				-0.3
10,788	+				-2.7
10,788	+				+0.4
10,788	+				+0.4
10,789	-				-0.2
10,789	-				-0.2
10,792	+				+1.5
10,792	+				+0.2
10,792	+				-0.5
10,830	+				+0.7
10,858	+				+0.4
10,858	+				+0.3
10,858	+				-0.5
10,858	+				-0.2
10,858	+				-0.1
10,858	+				-0.3
10,859	-				+0.2
10,862	+				-0.1
10,862	+				+0.4
10,862	+				+0.6
10,863	-				+1.2
10,863	-				-0.2
10,863	-				-1.0
10,878	+				-0.6
10,878	+				-0.5
10,912	-				-1.2
10,912	-				-0.4
10,912	-				-0.2
10,923	+				-0.4
10,950	-				+0.4
10,950	-				-2.0
10,971	+				+0.3
11,040	+				-0.4
11,259	+		EX31_RS17095	0.24	+0.6
11,364	+		EX31_RS17095	0.32	-0.0
11,364	+		EX31_RS17095	0.32	-2.5
11,365	-		EX31_RS17095	0.32	+0.4
11,365	-		EX31_RS17095	0.32	+0.5
11,499	+		EX31_RS17095	0.43	+0.4
11,588	+		EX31_RS17095	0.50	-0.2
11,696	+		EX31_RS17095	0.58	+0.5
11,696	+		EX31_RS17095	0.58	-1.2
11,696	+		EX31_RS17095	0.58	+2.1
11,696	+		EX31_RS17095	0.58	-1.2
11,697	-		EX31_RS17095	0.58	+0.1
11,697	-		EX31_RS17095	0.58	+0.3
11,697	-		EX31_RS17095	0.58	+0.4
11,697	-		EX31_RS17095	0.58	-1.8
11,697	-		EX31_RS17095	0.58	-0.1
11,697	-		EX31_RS17095	0.58	+0.8