Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07095 and EX31_RS07100 are separated by 52 nucleotides EX31_RS07100 and EX31_RS07105 are separated by 318 nucleotides EX31_RS07105 and EX31_RS07110 are separated by 44 nucleotides EX31_RS07110 and EX31_RS07115 overlap by 8 nucleotides EX31_RS07115 and EX31_RS07120 are separated by 187 nucleotides
EX31_RS07095: EX31_RS07095 - DUF1283 family protein, at 212,267 to 212,635
_RS07095
EX31_RS07100: EX31_RS07100 - DUF1161 domain-containing protein, at 212,688 to 212,981
_RS07100
EX31_RS07105: EX31_RS07105 - DUF3811 domain-containing protein, at 213,300 to 213,566
_RS07105
EX31_RS07110: EX31_RS07110 - sulfurtransferase, at 213,611 to 215,230
_RS07110
EX31_RS07115: EX31_RS07115 - cysteine dioxygenase, at 215,223 to 215,828
_RS07115
EX31_RS07120: EX31_RS07120 - LysR family transcriptional regulator, at 216,016 to 216,909
_RS07120
Position (kb) 213
214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 212.633 kb on + strand at 212.647 kb on + strand at 212.647 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.656 kb on - strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.723 kb on + strand, within EX31_RS07100 at 212.764 kb on + strand, within EX31_RS07100 at 212.819 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.909 kb on + strand, within EX31_RS07100 at 212.909 kb on + strand, within EX31_RS07100 at 212.979 kb on + strand at 212.982 kb on + strand at 212.982 kb on + strand at 212.982 kb on + strand at 212.983 kb on - strand at 213.071 kb on + strand at 213.072 kb on - strand at 213.074 kb on + strand at 213.074 kb on + strand at 213.074 kb on + strand at 213.074 kb on + strand at 213.081 kb on + strand at 213.081 kb on + strand at 213.081 kb on + strand at 213.081 kb on + strand at 213.082 kb on - strand at 213.082 kb on - strand at 213.086 kb on + strand at 213.087 kb on - strand at 213.222 kb on + strand at 213.222 kb on + strand at 213.223 kb on - strand at 213.223 kb on - strand at 213.223 kb on - strand at 213.262 kb on + strand at 213.374 kb on + strand, within EX31_RS07105 at 213.419 kb on + strand, within EX31_RS07105 at 213.429 kb on + strand, within EX31_RS07105 at 213.429 kb on + strand, within EX31_RS07105 at 213.429 kb on + strand, within EX31_RS07105 at 213.430 kb on - strand, within EX31_RS07105 at 213.430 kb on - strand, within EX31_RS07105 at 213.437 kb on + strand, within EX31_RS07105 at 213.497 kb on + strand, within EX31_RS07105 at 213.525 kb on + strand, within EX31_RS07105 at 213.526 kb on - strand, within EX31_RS07105 at 213.687 kb on + strand at 213.929 kb on + strand, within EX31_RS07110 at 214.155 kb on + strand, within EX31_RS07110 at 214.155 kb on + strand, within EX31_RS07110 at 214.156 kb on - strand, within EX31_RS07110 at 214.156 kb on - strand, within EX31_RS07110 at 214.156 kb on - strand, within EX31_RS07110 at 214.255 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.355 kb on + strand, within EX31_RS07110 at 214.356 kb on - strand, within EX31_RS07110 at 214.493 kb on - strand, within EX31_RS07110 at 214.583 kb on - strand, within EX31_RS07110 at 214.717 kb on + strand, within EX31_RS07110 at 214.856 kb on - strand, within EX31_RS07110 at 214.876 kb on + strand, within EX31_RS07110 at 214.877 kb on - strand, within EX31_RS07110 at 214.877 kb on - strand, within EX31_RS07110 at 214.880 kb on + strand, within EX31_RS07110 at 214.881 kb on - strand, within EX31_RS07110 at 214.982 kb on - strand, within EX31_RS07110 at 215.023 kb on - strand, within EX31_RS07110 at 215.029 kb on + strand, within EX31_RS07110 at 215.029 kb on + strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.080 kb on + strand at 215.105 kb on + strand at 215.106 kb on - strand at 215.106 kb on - strand at 215.537 kb on + strand, within EX31_RS07115 at 215.538 kb on - strand, within EX31_RS07115 at 215.541 kb on + strand, within EX31_RS07115 at 215.541 kb on + strand, within EX31_RS07115 at 215.542 kb on - strand, within EX31_RS07115 at 215.644 kb on + strand, within EX31_RS07115 at 215.840 kb on + strand at 215.841 kb on - strand at 215.897 kb on + strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.991 kb on - strand at 216.011 kb on + strand at 216.011 kb on + strand at 216.012 kb on - strand at 216.012 kb on - strand at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.226 kb on - strand, within EX31_RS07120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 212,633 + -0.3 212,647 + -0.7 212,647 + +1.2 212,655 + +0.1 212,655 + -0.2 212,655 + +0.9 212,655 + +0.1 212,655 + +0.3 212,656 - -1.1 212,659 + +0.1 212,659 + -0.2 212,659 + +0.5 212,659 + +0.8 212,659 + +0.4 212,659 + -1.6 212,723 + EX31_RS07100 0.12 +0.4 212,764 + EX31_RS07100 0.26 -1.2 212,819 + EX31_RS07100 0.45 +0.9 212,907 + EX31_RS07100 0.74 +0.4 212,907 + EX31_RS07100 0.74 +0.7 212,907 + EX31_RS07100 0.74 +0.7 212,907 + EX31_RS07100 0.74 +0.5 212,907 + EX31_RS07100 0.74 +0.5 212,907 + EX31_RS07100 0.74 +0.3 212,907 + EX31_RS07100 0.74 +0.3 212,909 + EX31_RS07100 0.75 +0.4 212,909 + EX31_RS07100 0.75 +1.1 212,979 + +0.3 212,982 + +0.7 212,982 + -0.4 212,982 + -0.2 212,983 - -2.7 213,071 + -0.7 213,072 - -0.4 213,074 + +1.0 213,074 + +0.1 213,074 + +1.0 213,074 + +0.2 213,081 + -0.9 213,081 + +1.2 213,081 + +1.1 213,081 + +0.4 213,082 - +0.9 213,082 - +2.0 213,086 + -0.9 213,087 - -1.0 213,222 + +1.3 213,222 + +0.7 213,223 - +0.3 213,223 - +0.7 213,223 - -0.8 213,262 + -1.9 213,374 + EX31_RS07105 0.28 -0.3 213,419 + EX31_RS07105 0.45 +0.9 213,429 + EX31_RS07105 0.48 +1.3 213,429 + EX31_RS07105 0.48 -0.4 213,429 + EX31_RS07105 0.48 +0.4 213,430 - EX31_RS07105 0.49 -0.5 213,430 - EX31_RS07105 0.49 +0.7 213,437 + EX31_RS07105 0.51 +0.7 213,497 + EX31_RS07105 0.74 +0.1 213,525 + EX31_RS07105 0.84 -1.9 213,526 - EX31_RS07105 0.85 -1.8 213,687 + +0.3 213,929 + EX31_RS07110 0.20 -0.7 214,155 + EX31_RS07110 0.34 +0.4 214,155 + EX31_RS07110 0.34 -0.3 214,156 - EX31_RS07110 0.34 +0.3 214,156 - EX31_RS07110 0.34 -0.1 214,156 - EX31_RS07110 0.34 -0.4 214,255 - EX31_RS07110 0.40 -1.8 214,354 - EX31_RS07110 0.46 +0.8 214,354 - EX31_RS07110 0.46 -0.9 214,354 - EX31_RS07110 0.46 -0.3 214,354 - EX31_RS07110 0.46 -1.3 214,354 - EX31_RS07110 0.46 +2.1 214,354 - EX31_RS07110 0.46 +0.9 214,355 + EX31_RS07110 0.46 -0.7 214,356 - EX31_RS07110 0.46 +0.3 214,493 - EX31_RS07110 0.54 -0.4 214,583 - EX31_RS07110 0.60 -0.5 214,717 + EX31_RS07110 0.68 +2.2 214,856 - EX31_RS07110 0.77 -0.5 214,876 + EX31_RS07110 0.78 -1.9 214,877 - EX31_RS07110 0.78 +0.6 214,877 - EX31_RS07110 0.78 -0.9 214,880 + EX31_RS07110 0.78 -0.1 214,881 - EX31_RS07110 0.78 +0.2 214,982 - EX31_RS07110 0.85 -0.7 215,023 - EX31_RS07110 0.87 -2.3 215,029 + EX31_RS07110 0.88 -1.9 215,029 + EX31_RS07110 0.88 -0.3 215,030 - EX31_RS07110 0.88 +0.4 215,030 - EX31_RS07110 0.88 -0.8 215,030 - EX31_RS07110 0.88 +0.2 215,030 - EX31_RS07110 0.88 -3.3 215,030 - EX31_RS07110 0.88 +0.1 215,030 - EX31_RS07110 0.88 +0.3 215,080 + -0.0 215,105 + +0.1 215,106 - -0.5 215,106 - -1.6 215,537 + EX31_RS07115 0.52 -0.8 215,538 - EX31_RS07115 0.52 +0.2 215,541 + EX31_RS07115 0.52 -2.3 215,541 + EX31_RS07115 0.52 -0.0 215,542 - EX31_RS07115 0.53 +0.7 215,644 + EX31_RS07115 0.69 -1.2 215,840 + -0.2 215,841 - +0.3 215,897 + -0.2 215,908 + +0.9 215,908 + -0.1 215,991 - +0.5 216,011 + +0.5 216,011 + -1.2 216,012 - +1.1 216,012 - -1.3 216,225 + EX31_RS07120 0.23 -0.3 216,225 + EX31_RS07120 0.23 -0.3 216,225 + EX31_RS07120 0.23 -0.1 216,226 - EX31_RS07120 0.23 -0.6
Or see this region's nucleotide sequence