Strain Fitness in Rahnella sp. WP5 around EX31_RS07105

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07095 and EX31_RS07100 are separated by 52 nucleotidesEX31_RS07100 and EX31_RS07105 are separated by 318 nucleotidesEX31_RS07105 and EX31_RS07110 are separated by 44 nucleotides EX31_RS07095: EX31_RS07095 - DUF1283 family protein, at 212,267 to 212,635 _RS07095 EX31_RS07100: EX31_RS07100 - DUF1161 domain-containing protein, at 212,688 to 212,981 _RS07100 EX31_RS07105: EX31_RS07105 - DUF3811 domain-containing protein, at 213,300 to 213,566 _RS07105 EX31_RS07110: EX31_RS07110 - sulfurtransferase, at 213,611 to 215,230 _RS07110 Position (kb) 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 212.326 kb on + strand, within EX31_RS07095at 212.326 kb on + strand, within EX31_RS07095at 212.326 kb on + strand, within EX31_RS07095at 212.513 kb on + strand, within EX31_RS07095at 212.513 kb on + strand, within EX31_RS07095at 212.570 kb on + strand, within EX31_RS07095at 212.633 kb on + strandat 212.647 kb on + strandat 212.647 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.656 kb on - strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.723 kb on + strand, within EX31_RS07100at 212.764 kb on + strand, within EX31_RS07100at 212.819 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.907 kb on + strand, within EX31_RS07100at 212.909 kb on + strand, within EX31_RS07100at 212.909 kb on + strand, within EX31_RS07100at 212.979 kb on + strandat 212.982 kb on + strandat 212.982 kb on + strandat 212.982 kb on + strandat 212.983 kb on - strandat 213.071 kb on + strandat 213.072 kb on - strandat 213.074 kb on + strandat 213.074 kb on + strandat 213.074 kb on + strandat 213.074 kb on + strandat 213.081 kb on + strandat 213.081 kb on + strandat 213.081 kb on + strandat 213.081 kb on + strandat 213.082 kb on - strandat 213.082 kb on - strandat 213.086 kb on + strandat 213.087 kb on - strandat 213.222 kb on + strandat 213.222 kb on + strandat 213.223 kb on - strandat 213.223 kb on - strandat 213.223 kb on - strandat 213.262 kb on + strandat 213.374 kb on + strand, within EX31_RS07105at 213.419 kb on + strand, within EX31_RS07105at 213.429 kb on + strand, within EX31_RS07105at 213.429 kb on + strand, within EX31_RS07105at 213.429 kb on + strand, within EX31_RS07105at 213.430 kb on - strand, within EX31_RS07105at 213.430 kb on - strand, within EX31_RS07105at 213.437 kb on + strand, within EX31_RS07105at 213.497 kb on + strand, within EX31_RS07105at 213.525 kb on + strand, within EX31_RS07105at 213.526 kb on - strand, within EX31_RS07105at 213.687 kb on + strandat 213.929 kb on + strand, within EX31_RS07110at 214.155 kb on + strand, within EX31_RS07110at 214.155 kb on + strand, within EX31_RS07110at 214.156 kb on - strand, within EX31_RS07110at 214.156 kb on - strand, within EX31_RS07110at 214.156 kb on - strand, within EX31_RS07110at 214.255 kb on - strand, within EX31_RS07110at 214.354 kb on - strand, within EX31_RS07110at 214.354 kb on - strand, within EX31_RS07110at 214.354 kb on - strand, within EX31_RS07110at 214.354 kb on - strand, within EX31_RS07110at 214.354 kb on - strand, within EX31_RS07110at 214.354 kb on - strand, within EX31_RS07110at 214.355 kb on + strand, within EX31_RS07110at 214.356 kb on - strand, within EX31_RS07110at 214.493 kb on - strand, within EX31_RS07110

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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212,326 + EX31_RS07095 0.16 -0.1
212,326 + EX31_RS07095 0.16 +1.3
212,326 + EX31_RS07095 0.16 +0.8
212,513 + EX31_RS07095 0.67 +0.1
212,513 + EX31_RS07095 0.67 +0.1
212,570 + EX31_RS07095 0.82 +0.9
212,633 + -0.3
212,647 + -0.7
212,647 + +1.2
212,655 + +0.1
212,655 + -0.2
212,655 + +0.9
212,655 + +0.1
212,655 + +0.3
212,656 - -1.1
212,659 + +0.1
212,659 + -0.2
212,659 + +0.5
212,659 + +0.8
212,659 + +0.4
212,659 + -1.6
212,723 + EX31_RS07100 0.12 +0.4
212,764 + EX31_RS07100 0.26 -1.2
212,819 + EX31_RS07100 0.45 +0.9
212,907 + EX31_RS07100 0.74 +0.4
212,907 + EX31_RS07100 0.74 +0.7
212,907 + EX31_RS07100 0.74 +0.7
212,907 + EX31_RS07100 0.74 +0.5
212,907 + EX31_RS07100 0.74 +0.5
212,907 + EX31_RS07100 0.74 +0.3
212,907 + EX31_RS07100 0.74 +0.3
212,909 + EX31_RS07100 0.75 +0.4
212,909 + EX31_RS07100 0.75 +1.1
212,979 + +0.3
212,982 + +0.7
212,982 + -0.4
212,982 + -0.2
212,983 - -2.7
213,071 + -0.7
213,072 - -0.4
213,074 + +1.0
213,074 + +0.1
213,074 + +1.0
213,074 + +0.2
213,081 + -0.9
213,081 + +1.2
213,081 + +1.1
213,081 + +0.4
213,082 - +0.9
213,082 - +2.0
213,086 + -0.9
213,087 - -1.0
213,222 + +1.3
213,222 + +0.7
213,223 - +0.3
213,223 - +0.7
213,223 - -0.8
213,262 + -1.9
213,374 + EX31_RS07105 0.28 -0.3
213,419 + EX31_RS07105 0.45 +0.9
213,429 + EX31_RS07105 0.48 +1.3
213,429 + EX31_RS07105 0.48 -0.4
213,429 + EX31_RS07105 0.48 +0.4
213,430 - EX31_RS07105 0.49 -0.5
213,430 - EX31_RS07105 0.49 +0.7
213,437 + EX31_RS07105 0.51 +0.7
213,497 + EX31_RS07105 0.74 +0.1
213,525 + EX31_RS07105 0.84 -1.9
213,526 - EX31_RS07105 0.85 -1.8
213,687 + +0.3
213,929 + EX31_RS07110 0.20 -0.7
214,155 + EX31_RS07110 0.34 +0.4
214,155 + EX31_RS07110 0.34 -0.3
214,156 - EX31_RS07110 0.34 +0.3
214,156 - EX31_RS07110 0.34 -0.1
214,156 - EX31_RS07110 0.34 -0.4
214,255 - EX31_RS07110 0.40 -1.8
214,354 - EX31_RS07110 0.46 +0.8
214,354 - EX31_RS07110 0.46 -0.9
214,354 - EX31_RS07110 0.46 -0.3
214,354 - EX31_RS07110 0.46 -1.3
214,354 - EX31_RS07110 0.46 +2.1
214,354 - EX31_RS07110 0.46 +0.9
214,355 + EX31_RS07110 0.46 -0.7
214,356 - EX31_RS07110 0.46 +0.3
214,493 - EX31_RS07110 0.54 -0.4

Or see this region's nucleotide sequence