Strain Fitness in Rahnella sp. WP5 around EX31_RS04955

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
117,236	+		EX31_RS04945	0.78	-0.0
117,248	+		EX31_RS04945	0.79	-2.0
117,248	+		EX31_RS04945	0.79	-0.3
117,396	+				-0.1
117,396	+				-0.4
117,396	+				-0.0
117,396	+				+0.3
117,396	+				+0.3
117,396	+				-0.1
117,397	-				+0.6
117,397	-				+0.1
117,397	-				-0.2
117,401	-				-0.6
117,418	+				-0.1
117,418	+				-0.6
117,418	+				+0.1
117,419	-				+0.2
117,419	-				+0.5
117,419	-				-1.6
117,419	-				-0.2
117,439	+				-0.0
117,548	+		EX31_RS04950	0.17	+0.1
117,549	-		EX31_RS04950	0.17	-0.2
117,549	-		EX31_RS04950	0.17	+0.6
117,549	-		EX31_RS04950	0.17	+0.5
117,549	-		EX31_RS04950	0.17	-0.8
117,552	+		EX31_RS04950	0.17	+0.3
117,553	-		EX31_RS04950	0.18	-0.5
117,553	-		EX31_RS04950	0.18	+0.5
117,596	+		EX31_RS04950	0.24	-0.1
117,597	-		EX31_RS04950	0.24	+1.0
117,633	-		EX31_RS04950	0.30	-0.1
117,633	-		EX31_RS04950	0.30	+0.5
117,685	+		EX31_RS04950	0.38	-0.2
117,686	-		EX31_RS04950	0.38	+0.5
117,773	+		EX31_RS04950	0.51	-0.6
117,938	+		EX31_RS04950	0.76	-0.7
117,938	+		EX31_RS04950	0.76	-0.2
117,980	+		EX31_RS04950	0.82	-1.5
117,981	-		EX31_RS04950	0.83	+0.3
118,033	+				-0.5
118,034	-				+0.7
118,094	+				+0.2
118,094	+				+1.0
118,094	+				-0.6
118,094	+				-0.0
118,094	+				-1.0
118,094	+				-0.7
118,094	+				-0.5
118,094	+				-0.5
118,094	+				+0.2
118,094	+				-1.3
118,094	+				+0.3
118,094	+				-0.1
118,094	+				-0.3
118,094	+				+0.4
118,094	+				-0.9
118,094	-				+0.5
118,095	-				+0.1
118,095	-				+0.2
118,095	-				+0.1
118,095	-				-0.1
118,095	-				+0.0
118,095	-				-0.3
118,095	-				-0.0
118,095	-				-0.7
118,095	-				-0.1
118,095	-				-0.1
118,096	+				+0.6
118,097	+				-0.7
118,097	+				-0.2
118,097	+				-0.5
118,097	+				+0.8
118,097	+				-0.6
118,097	+				+0.7
118,097	+				+0.2
118,097	+				+0.6
118,097	+				-0.4
118,097	+				-1.1
118,097	+				+0.7
118,097	+				+0.1
118,097	+				+0.3
118,097	+				-0.1
118,097	+				-0.2
118,098	-				-0.0
118,098	-				-0.9
118,098	-				+0.3
118,098	-				+0.0
118,098	-				+0.3
118,098	-				-0.2
118,098	-				-0.3
118,098	-				-0.4
118,098	-				-0.5
118,098	-				+0.0
118,098	-				+0.5
118,098	-				+0.3
118,098	-				-0.1
118,098	-				+0.3
118,098	-				-0.3
118,099	+				-0.7
118,099	+				-0.4
118,099	+				+0.8
118,099	+				-0.2
118,099	+				-1.0
118,099	+				+1.0
118,099	+				-1.0
118,099	+				+0.8
118,100	-				-0.1
118,100	-				+0.2
118,100	-				+0.2
118,100	-				+0.4
118,100	-				+0.2
118,100	-				-0.2
118,100	-				+0.4
118,100	-				+0.4
118,100	-				-0.2
118,100	-				-0.4
118,100	-				-0.0
118,100	-				-0.4
118,100	-				-0.2
118,100	-				+0.9
118,290	+		EX31_RS04955	0.36	-0.3
118,421	+		EX31_RS04955	0.64	+0.2
118,422	-		EX31_RS04955	0.64	+0.6
118,460	+		EX31_RS04955	0.72	+0.9
118,460	+		EX31_RS04955	0.72	+0.1
118,460	+		EX31_RS04955	0.72	+1.1
118,463	+		EX31_RS04955	0.73	-0.1
118,474	+		EX31_RS04955	0.75	+0.3
118,474	+		EX31_RS04955	0.75	+1.2
118,475	-		EX31_RS04955	0.75	-1.3
118,497	+		EX31_RS04955	0.80	+0.8
118,497	+		EX31_RS04955	0.80	+0.0
118,498	-		EX31_RS04955	0.80	+0.4
118,590	+				+0.3
118,590	+				+0.2
118,590	+				-2.0
118,591	-				+0.4
118,591	-				-0.5
118,591	-				+0.0
118,698	+		EX31_RS04960	0.31	+0.1
118,698	+		EX31_RS04960	0.31	-0.2
118,698	+		EX31_RS04960	0.31	-0.5
118,698	+		EX31_RS04960	0.31	-1.2
118,698	+		EX31_RS04960	0.31	-0.4
118,698	+		EX31_RS04960	0.31	-0.4
118,699	-		EX31_RS04960	0.32	-0.0
118,699	-		EX31_RS04960	0.32	+0.7
118,699	-		EX31_RS04960	0.32	+0.5
118,699	-		EX31_RS04960	0.32	-0.0
118,699	-		EX31_RS04960	0.32	-0.0
118,699	-		EX31_RS04960	0.32	-0.2
118,699	-		EX31_RS04960	0.32	+0.3
118,699	-		EX31_RS04960	0.32	+0.3
118,750	+		EX31_RS04960	0.48	-2.1
118,750	+		EX31_RS04960	0.48	+0.2
118,751	-		EX31_RS04960	0.49	-1.2
118,751	-		EX31_RS04960	0.49	+0.0
118,751	-		EX31_RS04960	0.49	-0.3
118,779	+		EX31_RS04960	0.58	+0.4
118,779	+		EX31_RS04960	0.58	-0.3
118,780	-		EX31_RS04960	0.58	+0.3
118,798	+		EX31_RS04960	0.64	-0.5
118,798	+		EX31_RS04960	0.64	-0.8
118,798	+		EX31_RS04960	0.64	-0.1
118,798	+		EX31_RS04960	0.64	-0.3
118,798	+		EX31_RS04960	0.64	-1.2
118,799	-		EX31_RS04960	0.64	+0.8
118,799	-		EX31_RS04960	0.64	-0.3
118,799	-		EX31_RS04960	0.64	+1.0
118,932	-				+0.4
118,932	-				+0.3
118,967	+				-1.1
118,986	+				+0.3
118,987	-				-1.1
119,045	+				-0.4
119,045	+				-0.2
119,045	+				-0.1
119,045	+				-0.5
119,046	-				+0.1
119,046	-				+0.2
119,046	-				+0.3
119,379	+		EX31_RS04965	0.29	+0.5
119,379	+		EX31_RS04965	0.29	+0.3
119,379	+		EX31_RS04965	0.29	+0.1
119,380	-		EX31_RS04965	0.29	+0.5
119,380	-		EX31_RS04965	0.29	+0.7
119,380	-		EX31_RS04965	0.29	+0.5
119,380	-		EX31_RS04965	0.29	-0.1
119,380	-		EX31_RS04965	0.29	+0.0
119,380	-		EX31_RS04965	0.29	-0.1
119,414	+		EX31_RS04965	0.32	+0.5
119,414	+		EX31_RS04965	0.32	-0.2
119,414	+		EX31_RS04965	0.32	-1.0
119,415	-		EX31_RS04965	0.32	+0.0
119,415	-		EX31_RS04965	0.32	-0.1
119,476	-		EX31_RS04965	0.36	-0.2
119,505	+		EX31_RS04965	0.38	+0.2
119,505	+		EX31_RS04965	0.38	+0.3
119,505	+		EX31_RS04965	0.38	+0.6
119,505	+		EX31_RS04965	0.38	+0.4
119,505	+		EX31_RS04965	0.38	-0.2
119,505	+		EX31_RS04965	0.38	-0.7
119,505	+		EX31_RS04965	0.38	-0.2
119,505	+		EX31_RS04965	0.38	+0.1
119,505	+		EX31_RS04965	0.38	-0.2
119,506	-		EX31_RS04965	0.38	+0.7
119,506	-		EX31_RS04965	0.38	-0.9
119,506	-		EX31_RS04965	0.38	-0.3
119,521	-		EX31_RS04965	0.40	-0.8
119,521	-		EX31_RS04965	0.40	-0.6
119,567	+		EX31_RS04965	0.43	-0.4
119,567	+		EX31_RS04965	0.43	-0.1
119,568	-		EX31_RS04965	0.43	+0.9
119,568	-		EX31_RS04965	0.43	-1.0
119,568	-		EX31_RS04965	0.43	-0.2