Strain Fitness in Rahnella sp. WP5 around EX31_RS01910

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01895 and EX31_RS01900 are separated by 51 nucleotidesEX31_RS01900 and EX31_RS01905 overlap by 4 nucleotidesEX31_RS01905 and EX31_RS01910 are separated by 46 nucleotidesEX31_RS01910 and EX31_RS01915 overlap by 4 nucleotidesEX31_RS01915 and EX31_RS01920 are separated by 31 nucleotides EX31_RS01895: EX31_RS01895 - type VI secretion system tip protein VgrG, at 410,821 to 413,367 _RS01895 EX31_RS01900: EX31_RS01900 - hypothetical protein, at 413,419 to 413,703 _RS01900 EX31_RS01905: EX31_RS01905 - hypothetical protein, at 413,700 to 414,128 _RS01905 EX31_RS01910: EX31_RS01910 - lipase family protein, at 414,175 to 416,124 _RS01910 EX31_RS01915: EX31_RS01915 - hypothetical protein, at 416,121 to 416,895 _RS01915 EX31_RS01920: EX31_RS01920 - hypothetical protein, at 416,927 to 417,685 _RS01920 Position (kb) 414 415 416 417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 413.190 kb on - strandat 413.299 kb on - strandat 413.300 kb on + strandat 413.301 kb on - strandat 413.316 kb on + strandat 413.323 kb on - strandat 413.331 kb on - strandat 413.381 kb on + strandat 413.381 kb on + strandat 413.382 kb on - strandat 413.386 kb on + strandat 413.387 kb on - strandat 413.387 kb on - strandat 413.392 kb on + strandat 413.485 kb on + strand, within EX31_RS01900at 413.487 kb on + strand, within EX31_RS01900at 413.488 kb on - strand, within EX31_RS01900at 413.493 kb on + strand, within EX31_RS01900at 413.493 kb on + strand, within EX31_RS01900at 413.493 kb on + strand, within EX31_RS01900at 413.526 kb on + strand, within EX31_RS01900at 413.526 kb on + strand, within EX31_RS01900at 413.527 kb on - strand, within EX31_RS01900at 413.527 kb on - strand, within EX31_RS01900at 413.626 kb on - strand, within EX31_RS01900at 413.679 kb on + strandat 413.679 kb on + strandat 413.680 kb on - strandat 413.787 kb on - strand, within EX31_RS01905at 413.792 kb on - strand, within EX31_RS01905at 413.906 kb on + strand, within EX31_RS01905at 413.907 kb on - strand, within EX31_RS01905at 413.930 kb on + strand, within EX31_RS01905at 414.044 kb on + strand, within EX31_RS01905at 414.044 kb on + strand, within EX31_RS01905at 414.085 kb on + strand, within EX31_RS01905at 414.096 kb on + strandat 414.226 kb on + strandat 414.226 kb on + strandat 414.226 kb on + strandat 414.226 kb on + strandat 414.227 kb on - strandat 414.227 kb on - strandat 414.227 kb on - strandat 414.260 kb on + strandat 414.298 kb on - strandat 414.386 kb on + strand, within EX31_RS01910at 414.411 kb on - strand, within EX31_RS01910at 414.492 kb on + strand, within EX31_RS01910at 414.492 kb on + strand, within EX31_RS01910at 414.493 kb on - strand, within EX31_RS01910at 414.796 kb on - strand, within EX31_RS01910at 414.798 kb on + strand, within EX31_RS01910at 414.799 kb on - strand, within EX31_RS01910at 414.817 kb on - strand, within EX31_RS01910at 414.817 kb on - strand, within EX31_RS01910at 414.869 kb on + strand, within EX31_RS01910at 414.883 kb on + strand, within EX31_RS01910at 414.946 kb on - strand, within EX31_RS01910at 414.998 kb on + strand, within EX31_RS01910at 415.000 kb on + strand, within EX31_RS01910at 415.000 kb on + strand, within EX31_RS01910at 415.001 kb on - strand, within EX31_RS01910at 415.001 kb on - strand, within EX31_RS01910at 415.167 kb on + strand, within EX31_RS01910at 415.168 kb on - strand, within EX31_RS01910at 415.172 kb on + strand, within EX31_RS01910at 415.172 kb on + strand, within EX31_RS01910at 415.173 kb on - strand, within EX31_RS01910at 415.221 kb on - strand, within EX31_RS01910at 415.227 kb on + strand, within EX31_RS01910at 415.231 kb on + strand, within EX31_RS01910at 415.231 kb on + strand, within EX31_RS01910at 415.235 kb on + strand, within EX31_RS01910at 415.235 kb on + strand, within EX31_RS01910at 415.235 kb on + strand, within EX31_RS01910at 415.236 kb on - strand, within EX31_RS01910at 415.239 kb on + strand, within EX31_RS01910at 415.240 kb on - strand, within EX31_RS01910at 415.277 kb on + strand, within EX31_RS01910at 415.316 kb on - strand, within EX31_RS01910at 415.365 kb on - strand, within EX31_RS01910at 415.458 kb on - strand, within EX31_RS01910at 415.475 kb on + strand, within EX31_RS01910at 415.481 kb on + strand, within EX31_RS01910at 415.481 kb on + strand, within EX31_RS01910at 415.481 kb on + strand, within EX31_RS01910at 415.509 kb on - strand, within EX31_RS01910at 415.590 kb on + strand, within EX31_RS01910at 415.676 kb on + strand, within EX31_RS01910at 415.677 kb on - strand, within EX31_RS01910at 415.677 kb on - strand, within EX31_RS01910at 415.677 kb on - strand, within EX31_RS01910at 415.855 kb on - strand, within EX31_RS01910at 416.144 kb on - strandat 416.146 kb on + strandat 416.164 kb on + strandat 416.198 kb on + strandat 416.198 kb on + strandat 416.315 kb on + strand, within EX31_RS01915at 416.358 kb on + strand, within EX31_RS01915at 416.358 kb on + strand, within EX31_RS01915at 416.370 kb on - strand, within EX31_RS01915at 416.483 kb on + strand, within EX31_RS01915at 416.556 kb on - strand, within EX31_RS01915at 416.616 kb on + strand, within EX31_RS01915at 416.616 kb on + strand, within EX31_RS01915at 416.617 kb on - strand, within EX31_RS01915at 416.723 kb on - strand, within EX31_RS01915at 416.816 kb on + strand, within EX31_RS01915at 416.847 kb on + strandat 416.983 kb on + strandat 416.999 kb on - strandat 417.092 kb on - strand, within EX31_RS01920

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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413,190 - +0.3
413,299 - +1.2
413,300 + -0.3
413,301 - -1.1
413,316 + -2.5
413,323 - -1.0
413,331 - +1.3
413,381 + +1.1
413,381 + -0.2
413,382 - -1.1
413,386 + +0.4
413,387 - +0.4
413,387 - -0.5
413,392 + +0.5
413,485 + EX31_RS01900 0.23 -0.5
413,487 + EX31_RS01900 0.24 -0.5
413,488 - EX31_RS01900 0.24 -0.7
413,493 + EX31_RS01900 0.26 -1.3
413,493 + EX31_RS01900 0.26 +0.8
413,493 + EX31_RS01900 0.26 +0.1
413,526 + EX31_RS01900 0.38 -1.6
413,526 + EX31_RS01900 0.38 -2.9
413,527 - EX31_RS01900 0.38 +0.3
413,527 - EX31_RS01900 0.38 -0.6
413,626 - EX31_RS01900 0.73 -0.1
413,679 + -0.1
413,679 + +0.4
413,680 - -2.5
413,787 - EX31_RS01905 0.20 -0.3
413,792 - EX31_RS01905 0.21 -0.6
413,906 + EX31_RS01905 0.48 +0.5
413,907 - EX31_RS01905 0.48 -0.6
413,930 + EX31_RS01905 0.54 -0.2
414,044 + EX31_RS01905 0.80 +0.1
414,044 + EX31_RS01905 0.80 +0.5
414,085 + EX31_RS01905 0.90 -1.7
414,096 + +0.1
414,226 + -0.8
414,226 + +1.2
414,226 + -0.5
414,226 + -1.1
414,227 - +0.1
414,227 - -1.4
414,227 - -0.3
414,260 + -0.4
414,298 - -1.1
414,386 + EX31_RS01910 0.11 -1.6
414,411 - EX31_RS01910 0.12 -0.8
414,492 + EX31_RS01910 0.16 +0.1
414,492 + EX31_RS01910 0.16 -0.6
414,493 - EX31_RS01910 0.16 -0.2
414,796 - EX31_RS01910 0.32 +0.1
414,798 + EX31_RS01910 0.32 +0.2
414,799 - EX31_RS01910 0.32 -0.9
414,817 - EX31_RS01910 0.33 -0.7
414,817 - EX31_RS01910 0.33 +0.3
414,869 + EX31_RS01910 0.36 -1.2
414,883 + EX31_RS01910 0.36 -0.4
414,946 - EX31_RS01910 0.40 +0.0
414,998 + EX31_RS01910 0.42 -0.9
415,000 + EX31_RS01910 0.42 -0.3
415,000 + EX31_RS01910 0.42 +0.2
415,001 - EX31_RS01910 0.42 +1.2
415,001 - EX31_RS01910 0.42 +1.0
415,167 + EX31_RS01910 0.51 -0.2
415,168 - EX31_RS01910 0.51 -1.4
415,172 + EX31_RS01910 0.51 -0.2
415,172 + EX31_RS01910 0.51 +0.4
415,173 - EX31_RS01910 0.51 +0.5
415,221 - EX31_RS01910 0.54 +0.5
415,227 + EX31_RS01910 0.54 +1.6
415,231 + EX31_RS01910 0.54 +0.9
415,231 + EX31_RS01910 0.54 -1.1
415,235 + EX31_RS01910 0.54 -1.1
415,235 + EX31_RS01910 0.54 -0.2
415,235 + EX31_RS01910 0.54 -0.9
415,236 - EX31_RS01910 0.54 -0.2
415,239 + EX31_RS01910 0.55 -0.6
415,240 - EX31_RS01910 0.55 -0.9
415,277 + EX31_RS01910 0.57 -0.3
415,316 - EX31_RS01910 0.59 -1.4
415,365 - EX31_RS01910 0.61 -0.2
415,458 - EX31_RS01910 0.66 -2.7
415,475 + EX31_RS01910 0.67 -0.8
415,481 + EX31_RS01910 0.67 -1.5
415,481 + EX31_RS01910 0.67 -1.4
415,481 + EX31_RS01910 0.67 -2.1
415,509 - EX31_RS01910 0.68 +0.0
415,590 + EX31_RS01910 0.73 +0.1
415,676 + EX31_RS01910 0.77 -2.0
415,677 - EX31_RS01910 0.77 +0.2
415,677 - EX31_RS01910 0.77 -2.9
415,677 - EX31_RS01910 0.77 +0.6
415,855 - EX31_RS01910 0.86 +1.1
416,144 - -0.7
416,146 + -1.0
416,164 + -0.1
416,198 + +2.7
416,198 + -0.2
416,315 + EX31_RS01915 0.25 -0.1
416,358 + EX31_RS01915 0.31 +0.0
416,358 + EX31_RS01915 0.31 -1.6
416,370 - EX31_RS01915 0.32 +0.8
416,483 + EX31_RS01915 0.47 -2.0
416,556 - EX31_RS01915 0.56 -0.5
416,616 + EX31_RS01915 0.64 -1.8
416,616 + EX31_RS01915 0.64 +0.2
416,617 - EX31_RS01915 0.64 -0.0
416,723 - EX31_RS01915 0.78 -0.2
416,816 + EX31_RS01915 0.90 -0.3
416,847 + -1.2
416,983 + -2.1
416,999 - -0.4
417,092 - EX31_RS01920 0.22 -0.2

Or see this region's nucleotide sequence