Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11865 and EX31_RS11870 are separated by 192 nucleotides EX31_RS11870 and EX31_RS11875 are separated by 396 nucleotides EX31_RS11875 and EX31_RS11880 are separated by 182 nucleotides
EX31_RS11865: EX31_RS11865 - tRNA dihydrouridine(20/20a) synthase DusA, at 33,058 to 34,065
_RS11865
EX31_RS11870: EX31_RS11870 - envelope stress response protein PspG, at 34,258 to 34,494
_RS11870
EX31_RS11875: EX31_RS11875 - quinone oxidoreductase, at 34,891 to 35,874
_RS11875
EX31_RS11880: EX31_RS11880 - replicative DNA helicase, at 36,057 to 37,463
_RS11880
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.892 kb on + strand, within EX31_RS11865 at 33.892 kb on + strand, within EX31_RS11865 at 33.892 kb on + strand, within EX31_RS11865 at 33.892 kb on + strand, within EX31_RS11865 at 33.892 kb on + strand, within EX31_RS11865 at 33.893 kb on - strand, within EX31_RS11865 at 33.893 kb on - strand, within EX31_RS11865 at 33.893 kb on - strand, within EX31_RS11865 at 33.893 kb on - strand, within EX31_RS11865 at 33.915 kb on + strand, within EX31_RS11865 at 33.985 kb on - strand at 33.985 kb on - strand at 34.094 kb on + strand at 34.166 kb on - strand at 34.166 kb on - strand at 34.197 kb on - strand at 34.197 kb on - strand at 34.221 kb on + strand at 34.221 kb on + strand at 34.222 kb on - strand at 34.222 kb on - strand at 34.222 kb on - strand at 34.222 kb on - strand at 34.222 kb on - strand at 34.242 kb on + strand at 34.242 kb on + strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.245 kb on + strand at 34.245 kb on + strand at 34.245 kb on + strand at 34.246 kb on - strand at 34.246 kb on - strand at 34.293 kb on + strand, within EX31_RS11870 at 34.294 kb on - strand, within EX31_RS11870 at 34.319 kb on + strand, within EX31_RS11870 at 34.319 kb on + strand, within EX31_RS11870 at 34.496 kb on - strand at 34.575 kb on - strand at 34.589 kb on + strand at 34.590 kb on - strand at 34.600 kb on + strand at 34.621 kb on + strand at 34.621 kb on + strand at 34.621 kb on + strand at 34.621 kb on + strand at 34.621 kb on + strand at 34.622 kb on - strand at 34.648 kb on + strand at 34.648 kb on + strand at 34.678 kb on + strand at 34.679 kb on - strand at 34.679 kb on - strand at 34.710 kb on + strand at 34.745 kb on + strand at 34.745 kb on + strand at 34.745 kb on + strand at 34.745 kb on + strand at 34.753 kb on + strand at 34.753 kb on + strand at 34.753 kb on + strand at 34.753 kb on + strand at 34.754 kb on - strand at 34.754 kb on - strand at 34.754 kb on - strand at 34.754 kb on - strand at 34.754 kb on - strand at 34.776 kb on + strand at 34.787 kb on - strand at 34.791 kb on + strand at 34.791 kb on + strand at 34.792 kb on - strand at 34.799 kb on + strand at 34.903 kb on + strand at 35.000 kb on - strand, within EX31_RS11875 at 35.070 kb on - strand, within EX31_RS11875 at 35.119 kb on + strand, within EX31_RS11875 at 35.141 kb on - strand, within EX31_RS11875 at 35.173 kb on + strand, within EX31_RS11875 at 35.174 kb on - strand, within EX31_RS11875 at 35.214 kb on + strand, within EX31_RS11875 at 35.214 kb on + strand, within EX31_RS11875 at 35.214 kb on + strand, within EX31_RS11875 at 35.214 kb on + strand, within EX31_RS11875 at 35.215 kb on - strand, within EX31_RS11875 at 35.215 kb on - strand, within EX31_RS11875 at 35.286 kb on + strand, within EX31_RS11875 at 35.286 kb on + strand, within EX31_RS11875 at 35.287 kb on - strand, within EX31_RS11875 at 35.301 kb on - strand, within EX31_RS11875 at 35.304 kb on + strand, within EX31_RS11875 at 35.305 kb on - strand, within EX31_RS11875 at 35.305 kb on - strand, within EX31_RS11875 at 35.377 kb on + strand, within EX31_RS11875 at 35.416 kb on + strand, within EX31_RS11875 at 35.417 kb on - strand, within EX31_RS11875 at 35.461 kb on + strand, within EX31_RS11875 at 35.461 kb on + strand, within EX31_RS11875 at 35.461 kb on + strand, within EX31_RS11875 at 35.461 kb on + strand, within EX31_RS11875 at 35.461 kb on + strand, within EX31_RS11875 at 35.462 kb on - strand, within EX31_RS11875 at 35.462 kb on - strand, within EX31_RS11875 at 35.462 kb on - strand, within EX31_RS11875 at 35.462 kb on - strand, within EX31_RS11875 at 35.482 kb on + strand, within EX31_RS11875 at 35.482 kb on + strand, within EX31_RS11875 at 35.482 kb on + strand, within EX31_RS11875 at 35.486 kb on + strand, within EX31_RS11875 at 35.486 kb on + strand, within EX31_RS11875 at 35.486 kb on + strand, within EX31_RS11875 at 35.487 kb on - strand, within EX31_RS11875 at 35.487 kb on - strand, within EX31_RS11875 at 35.505 kb on + strand, within EX31_RS11875 at 35.536 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.572 kb on + strand, within EX31_RS11875 at 35.573 kb on - strand, within EX31_RS11875 at 35.573 kb on - strand, within EX31_RS11875 at 35.573 kb on - strand, within EX31_RS11875 at 35.573 kb on - strand, within EX31_RS11875 at 35.591 kb on + strand, within EX31_RS11875 at 35.591 kb on + strand, within EX31_RS11875 at 35.591 kb on + strand, within EX31_RS11875 at 35.591 kb on + strand, within EX31_RS11875 at 35.592 kb on - strand, within EX31_RS11875 at 35.615 kb on + strand, within EX31_RS11875 at 35.615 kb on + strand, within EX31_RS11875 at 35.616 kb on - strand, within EX31_RS11875 at 35.616 kb on - strand, within EX31_RS11875 at 35.648 kb on - strand, within EX31_RS11875 at 35.671 kb on + strand, within EX31_RS11875 at 35.671 kb on + strand, within EX31_RS11875 at 35.671 kb on + strand, within EX31_RS11875 at 35.672 kb on - strand, within EX31_RS11875 at 35.721 kb on - strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.738 kb on + strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.739 kb on - strand, within EX31_RS11875 at 35.742 kb on + strand, within EX31_RS11875 at 35.742 kb on + strand, within EX31_RS11875 at 35.743 kb on - strand, within EX31_RS11875 at 35.743 kb on - strand, within EX31_RS11875 at 35.743 kb on - strand, within EX31_RS11875 at 35.748 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.750 kb on + strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.751 kb on - strand, within EX31_RS11875 at 35.769 kb on + strand, within EX31_RS11875 at 35.769 kb on + strand, within EX31_RS11875 at 35.770 kb on - strand, within EX31_RS11875 at 35.770 kb on - strand, within EX31_RS11875 at 35.822 kb on + strand at 35.823 kb on - strand at 35.823 kb on - strand at 35.823 kb on - strand at 35.823 kb on - strand at 35.823 kb on - strand at 35.909 kb on + strand at 35.914 kb on + strand at 35.915 kb on - strand at 35.915 kb on - strand at 35.946 kb on + strand at 35.946 kb on + strand at 35.946 kb on + strand at 35.946 kb on + strand at 35.947 kb on - strand at 35.956 kb on + strand at 35.956 kb on + strand at 35.974 kb on + strand at 35.974 kb on + strand at 35.976 kb on + strand at 35.976 kb on + strand at 35.976 kb on + strand at 36.035 kb on + strand at 36.035 kb on + strand at 36.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 33,892 + EX31_RS11865 0.83 -0.0 33,892 + EX31_RS11865 0.83 +0.1 33,892 + EX31_RS11865 0.83 -0.6 33,892 + EX31_RS11865 0.83 +0.5 33,892 + EX31_RS11865 0.83 +1.1 33,893 - EX31_RS11865 0.83 -0.1 33,893 - EX31_RS11865 0.83 -0.3 33,893 - EX31_RS11865 0.83 +0.1 33,893 - EX31_RS11865 0.83 -0.1 33,915 + EX31_RS11865 0.85 +0.6 33,985 - +0.2 33,985 - +0.9 34,094 + -0.1 34,166 - +0.9 34,166 - +0.5 34,197 - +2.0 34,197 - -0.8 34,221 + -1.3 34,221 + -0.4 34,222 - +0.4 34,222 - -0.1 34,222 - -0.2 34,222 - +0.6 34,222 - -0.6 34,242 + +0.4 34,242 + +0.5 34,243 - +0.6 34,243 - -0.5 34,243 - -0.2 34,243 - +0.9 34,243 - +0.4 34,243 - -0.1 34,243 - -0.2 34,245 + -0.2 34,245 + +0.2 34,245 + -0.0 34,246 - -0.4 34,246 - +0.4 34,293 + EX31_RS11870 0.15 +0.0 34,294 - EX31_RS11870 0.15 +0.1 34,319 + EX31_RS11870 0.26 +0.4 34,319 + EX31_RS11870 0.26 -0.1 34,496 - +0.9 34,575 - +0.0 34,589 + +0.3 34,590 - +0.1 34,600 + -0.2 34,621 + +0.1 34,621 + +0.1 34,621 + -0.1 34,621 + -0.1 34,621 + +0.2 34,622 - -0.1 34,648 + -0.2 34,648 + +0.0 34,678 + +0.1 34,679 - -0.0 34,679 - +0.2 34,710 + -0.5 34,745 + -0.1 34,745 + +0.7 34,745 + +0.4 34,745 + +0.4 34,753 + -0.1 34,753 + +1.1 34,753 + -0.3 34,753 + -0.0 34,754 - +0.9 34,754 - +0.4 34,754 - -0.2 34,754 - -0.6 34,754 - -0.3 34,776 + -0.8 34,787 - +0.1 34,791 + -0.3 34,791 + +0.6 34,792 - +0.3 34,799 + +0.4 34,903 + +0.7 35,000 - EX31_RS11875 0.11 -0.4 35,070 - EX31_RS11875 0.18 +0.2 35,119 + EX31_RS11875 0.23 +0.2 35,141 - EX31_RS11875 0.25 -0.2 35,173 + EX31_RS11875 0.29 -0.7 35,174 - EX31_RS11875 0.29 -0.5 35,214 + EX31_RS11875 0.33 +0.3 35,214 + EX31_RS11875 0.33 -0.2 35,214 + EX31_RS11875 0.33 -0.2 35,214 + EX31_RS11875 0.33 -1.3 35,215 - EX31_RS11875 0.33 +0.7 35,215 - EX31_RS11875 0.33 +0.0 35,286 + EX31_RS11875 0.40 +0.5 35,286 + EX31_RS11875 0.40 -0.2 35,287 - EX31_RS11875 0.40 +0.1 35,301 - EX31_RS11875 0.42 -0.0 35,304 + EX31_RS11875 0.42 -0.9 35,305 - EX31_RS11875 0.42 -1.6 35,305 - EX31_RS11875 0.42 +0.1 35,377 + EX31_RS11875 0.49 +0.2 35,416 + EX31_RS11875 0.53 -0.0 35,417 - EX31_RS11875 0.53 -1.9 35,461 + EX31_RS11875 0.58 -0.4 35,461 + EX31_RS11875 0.58 -0.3 35,461 + EX31_RS11875 0.58 +0.7 35,461 + EX31_RS11875 0.58 +0.3 35,461 + EX31_RS11875 0.58 -0.2 35,462 - EX31_RS11875 0.58 +0.9 35,462 - EX31_RS11875 0.58 +0.6 35,462 - EX31_RS11875 0.58 +0.4 35,462 - EX31_RS11875 0.58 -0.0 35,482 + EX31_RS11875 0.60 -0.0 35,482 + EX31_RS11875 0.60 -0.6 35,482 + EX31_RS11875 0.60 +0.9 35,486 + EX31_RS11875 0.60 +0.9 35,486 + EX31_RS11875 0.60 -0.6 35,486 + EX31_RS11875 0.60 -0.5 35,487 - EX31_RS11875 0.61 +0.0 35,487 - EX31_RS11875 0.61 -0.3 35,505 + EX31_RS11875 0.62 +0.4 35,536 + EX31_RS11875 0.66 +0.7 35,572 + EX31_RS11875 0.69 +0.9 35,572 + EX31_RS11875 0.69 -0.6 35,572 + EX31_RS11875 0.69 +0.7 35,572 + EX31_RS11875 0.69 +1.0 35,572 + EX31_RS11875 0.69 +0.0 35,572 + EX31_RS11875 0.69 -0.5 35,572 + EX31_RS11875 0.69 -0.6 35,572 + EX31_RS11875 0.69 +1.1 35,572 + EX31_RS11875 0.69 +0.3 35,573 - EX31_RS11875 0.69 +0.5 35,573 - EX31_RS11875 0.69 -0.1 35,573 - EX31_RS11875 0.69 -0.4 35,573 - EX31_RS11875 0.69 -0.4 35,591 + EX31_RS11875 0.71 +0.4 35,591 + EX31_RS11875 0.71 +0.1 35,591 + EX31_RS11875 0.71 -0.5 35,591 + EX31_RS11875 0.71 +0.2 35,592 - EX31_RS11875 0.71 +0.0 35,615 + EX31_RS11875 0.74 -1.1 35,615 + EX31_RS11875 0.74 -0.1 35,616 - EX31_RS11875 0.74 -0.3 35,616 - EX31_RS11875 0.74 +0.2 35,648 - EX31_RS11875 0.77 -0.1 35,671 + EX31_RS11875 0.79 +0.7 35,671 + EX31_RS11875 0.79 -0.1 35,671 + EX31_RS11875 0.79 +0.1 35,672 - EX31_RS11875 0.79 -0.3 35,721 - EX31_RS11875 0.84 -0.1 35,738 + EX31_RS11875 0.86 +0.3 35,738 + EX31_RS11875 0.86 +0.6 35,738 + EX31_RS11875 0.86 +0.7 35,738 + EX31_RS11875 0.86 +0.6 35,738 + EX31_RS11875 0.86 -0.0 35,738 + EX31_RS11875 0.86 +0.2 35,738 + EX31_RS11875 0.86 -0.1 35,738 + EX31_RS11875 0.86 +0.5 35,738 + EX31_RS11875 0.86 -0.4 35,738 + EX31_RS11875 0.86 +0.5 35,738 + EX31_RS11875 0.86 +0.2 35,738 + EX31_RS11875 0.86 +0.8 35,738 + EX31_RS11875 0.86 +0.0 35,738 + EX31_RS11875 0.86 +0.4 35,738 + EX31_RS11875 0.86 +0.4 35,738 + EX31_RS11875 0.86 -0.3 35,738 + EX31_RS11875 0.86 -0.0 35,739 - EX31_RS11875 0.86 +0.5 35,739 - EX31_RS11875 0.86 +0.3 35,739 - EX31_RS11875 0.86 -0.0 35,739 - EX31_RS11875 0.86 +0.1 35,739 - EX31_RS11875 0.86 -0.1 35,739 - EX31_RS11875 0.86 +0.6 35,739 - EX31_RS11875 0.86 -0.3 35,739 - EX31_RS11875 0.86 -0.4 35,739 - EX31_RS11875 0.86 +0.6 35,742 + EX31_RS11875 0.86 +0.4 35,742 + EX31_RS11875 0.86 +0.3 35,743 - EX31_RS11875 0.87 -0.4 35,743 - EX31_RS11875 0.87 +1.0 35,743 - EX31_RS11875 0.87 +0.3 35,748 + EX31_RS11875 0.87 -0.4 35,750 + EX31_RS11875 0.87 +0.1 35,750 + EX31_RS11875 0.87 +1.0 35,750 + EX31_RS11875 0.87 +0.2 35,750 + EX31_RS11875 0.87 +0.5 35,750 + EX31_RS11875 0.87 -0.2 35,750 + EX31_RS11875 0.87 +0.2 35,750 + EX31_RS11875 0.87 -0.5 35,750 + EX31_RS11875 0.87 -0.3 35,750 + EX31_RS11875 0.87 -0.3 35,751 - EX31_RS11875 0.87 -0.0 35,751 - EX31_RS11875 0.87 +0.6 35,751 - EX31_RS11875 0.87 +0.1 35,751 - EX31_RS11875 0.87 +1.3 35,751 - EX31_RS11875 0.87 +0.1 35,751 - EX31_RS11875 0.87 +0.0 35,751 - EX31_RS11875 0.87 -0.4 35,751 - EX31_RS11875 0.87 -0.6 35,751 - EX31_RS11875 0.87 -0.3 35,751 - EX31_RS11875 0.87 +0.1 35,769 + EX31_RS11875 0.89 +0.4 35,769 + EX31_RS11875 0.89 -0.1 35,770 - EX31_RS11875 0.89 -0.2 35,770 - EX31_RS11875 0.89 -0.3 35,822 + +0.1 35,823 - -0.8 35,823 - +0.3 35,823 - -0.3 35,823 - +0.2 35,823 - -0.2 35,909 + +0.2 35,914 + -0.3 35,915 - -0.1 35,915 - +0.0 35,946 + -1.5 35,946 + -0.2 35,946 + -0.6 35,946 + -0.7 35,947 - -0.4 35,956 + -0.5 35,956 + +0.2 35,974 + +0.2 35,974 + +0.4 35,976 + -0.3 35,976 + +0.6 35,976 + -0.1 36,035 + +0.1 36,035 + +0.1 36,035 + +0.0
Or see this region's nucleotide sequence