Strain Fitness in Rahnella sp. WP5 around EX31_RS04845

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04840 and EX31_RS04845 are separated by 399 nucleotidesEX31_RS04845 and EX31_RS04850 are separated by 86 nucleotides EX31_RS04840: EX31_RS04840 - RNA-binding transcriptional accessory protein, at 93,635 to 95,965 _RS04840 EX31_RS04845: EX31_RS04845 - ferrous iron transporter A, at 96,365 to 96,589 _RS04845 EX31_RS04850: EX31_RS04850 - Fe(2+) transporter permease subunit FeoB, at 96,676 to 98,994 _RS04850 Position (kb) 96 97Strain fitness (log2 ratio) -2 -1 0 1 2at 95.485 kb on + strand, within EX31_RS04840at 95.530 kb on + strand, within EX31_RS04840at 95.605 kb on + strand, within EX31_RS04840at 95.606 kb on - strand, within EX31_RS04840at 95.606 kb on - strand, within EX31_RS04840at 95.608 kb on + strand, within EX31_RS04840at 95.608 kb on + strand, within EX31_RS04840at 95.608 kb on + strand, within EX31_RS04840at 95.608 kb on + strand, within EX31_RS04840at 95.609 kb on - strand, within EX31_RS04840at 95.609 kb on - strand, within EX31_RS04840at 95.609 kb on - strand, within EX31_RS04840at 95.609 kb on - strand, within EX31_RS04840at 96.022 kb on + strandat 96.074 kb on + strandat 96.074 kb on + strandat 96.074 kb on + strandat 96.075 kb on - strandat 96.082 kb on + strandat 96.083 kb on - strandat 96.104 kb on + strandat 96.104 kb on + strandat 96.104 kb on + strandat 96.104 kb on + strandat 96.104 kb on + strandat 96.104 kb on + strandat 96.104 kb on + strandat 96.104 kb on + strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.105 kb on - strandat 96.175 kb on - strandat 96.183 kb on + strandat 96.184 kb on - strandat 96.187 kb on + strandat 96.188 kb on - strandat 96.188 kb on - strandat 96.188 kb on - strandat 96.211 kb on + strandat 96.218 kb on + strandat 96.271 kb on + strandat 96.272 kb on - strandat 96.272 kb on - strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.282 kb on + strandat 96.283 kb on - strandat 96.283 kb on - strandat 96.283 kb on - strandat 96.283 kb on - strandat 96.314 kb on + strandat 96.315 kb on - strandat 96.315 kb on - strandat 96.364 kb on + strandat 96.364 kb on + strandat 96.364 kb on + strandat 96.365 kb on - strandat 96.365 kb on - strandat 96.391 kb on + strand, within EX31_RS04845at 96.392 kb on - strand, within EX31_RS04845at 96.428 kb on + strand, within EX31_RS04845at 96.481 kb on + strand, within EX31_RS04845at 96.647 kb on + strandat 96.647 kb on + strandat 96.648 kb on - strandat 96.663 kb on + strandat 96.663 kb on + strandat 96.664 kb on - strandat 96.831 kb on + strandat 96.831 kb on + strandat 96.832 kb on - strandat 96.832 kb on - strandat 96.856 kb on + strandat 96.857 kb on - strandat 96.857 kb on - strandat 96.857 kb on - strandat 96.913 kb on + strand, within EX31_RS04850at 96.913 kb on + strand, within EX31_RS04850at 96.913 kb on + strand, within EX31_RS04850at 96.913 kb on + strand, within EX31_RS04850at 96.913 kb on + strand, within EX31_RS04850at 96.913 kb on + strand, within EX31_RS04850at 96.913 kb on + strand, within EX31_RS04850at 96.913 kb on + strand, within EX31_RS04850at 96.914 kb on - strand, within EX31_RS04850at 96.914 kb on - strand, within EX31_RS04850at 96.914 kb on - strand, within EX31_RS04850at 96.914 kb on - strand, within EX31_RS04850at 96.914 kb on - strand, within EX31_RS04850at 96.980 kb on + strand, within EX31_RS04850at 96.981 kb on - strand, within EX31_RS04850at 96.981 kb on - strand, within EX31_RS04850at 96.981 kb on - strand, within EX31_RS04850at 96.982 kb on + strand, within EX31_RS04850at 96.983 kb on - strand, within EX31_RS04850at 97.068 kb on + strand, within EX31_RS04850at 97.069 kb on - strand, within EX31_RS04850at 97.069 kb on - strand, within EX31_RS04850at 97.069 kb on - strand, within EX31_RS04850at 97.074 kb on + strand, within EX31_RS04850at 97.125 kb on + strand, within EX31_RS04850at 97.126 kb on - strand, within EX31_RS04850at 97.204 kb on + strand, within EX31_RS04850at 97.205 kb on - strand, within EX31_RS04850at 97.205 kb on - strand, within EX31_RS04850at 97.205 kb on - strand, within EX31_RS04850at 97.205 kb on - strand, within EX31_RS04850at 97.205 kb on - strand, within EX31_RS04850at 97.217 kb on + strand, within EX31_RS04850at 97.311 kb on + strand, within EX31_RS04850at 97.311 kb on + strand, within EX31_RS04850at 97.311 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.315 kb on + strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.316 kb on - strand, within EX31_RS04850at 97.318 kb on - strand, within EX31_RS04850at 97.349 kb on + strand, within EX31_RS04850at 97.350 kb on - strand, within EX31_RS04850at 97.350 kb on - strand, within EX31_RS04850at 97.470 kb on + strand, within EX31_RS04850at 97.482 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.555 kb on + strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850at 97.556 kb on - strand, within EX31_RS04850

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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95,485 + EX31_RS04840 0.79 -0.0
95,530 + EX31_RS04840 0.81 +0.7
95,605 + EX31_RS04840 0.85 +0.5
95,606 - EX31_RS04840 0.85 +0.5
95,606 - EX31_RS04840 0.85 -0.9
95,608 + EX31_RS04840 0.85 -0.9
95,608 + EX31_RS04840 0.85 -1.4
95,608 + EX31_RS04840 0.85 +0.9
95,608 + EX31_RS04840 0.85 -0.3
95,609 - EX31_RS04840 0.85 -0.3
95,609 - EX31_RS04840 0.85 -0.3
95,609 - EX31_RS04840 0.85 +0.0
95,609 - EX31_RS04840 0.85 +0.5
96,022 + -0.2
96,074 + -0.7
96,074 + +0.3
96,074 + +0.6
96,075 - -0.6
96,082 + -0.1
96,083 - +0.3
96,104 + -1.0
96,104 + -2.4
96,104 + -0.8
96,104 + -0.1
96,104 + -0.5
96,104 + -0.0
96,104 + -0.3
96,104 + +0.1
96,105 - +0.6
96,105 - -0.6
96,105 - +1.1
96,105 - +0.6
96,105 - +0.8
96,105 - +0.3
96,105 - +0.2
96,105 - -0.0
96,105 - -0.6
96,105 - +0.1
96,105 - +0.2
96,105 - +0.0
96,105 - +0.5
96,175 - -0.5
96,183 + -0.0
96,184 - -0.1
96,187 + -1.7
96,188 - -1.1
96,188 - +0.1
96,188 - -0.2
96,211 + +0.4
96,218 + +0.3
96,271 + -0.5
96,272 - -0.3
96,272 - -0.4
96,282 + -0.7
96,282 + -0.2
96,282 + +0.1
96,282 + +0.1
96,282 + +1.9
96,282 + -0.0
96,282 + -0.0
96,282 + -0.5
96,282 + -0.1
96,282 + +0.0
96,283 - +0.2
96,283 - +0.0
96,283 - -0.3
96,283 - -0.1
96,314 + +0.5
96,315 - +0.1
96,315 - -0.4
96,364 + -0.4
96,364 + +0.3
96,364 + +0.1
96,365 - +0.0
96,365 - +0.2
96,391 + EX31_RS04845 0.12 +0.2
96,392 - EX31_RS04845 0.12 -0.6
96,428 + EX31_RS04845 0.28 +0.4
96,481 + EX31_RS04845 0.52 +1.0
96,647 + +0.3
96,647 + -0.2
96,648 - +0.2
96,663 + -0.2
96,663 + +0.4
96,664 - -0.4
96,831 + +0.3
96,831 + +0.2
96,832 - +0.4
96,832 - -0.3
96,856 + +0.1
96,857 - -0.8
96,857 - -1.0
96,857 - -0.3
96,913 + EX31_RS04850 0.10 +0.3
96,913 + EX31_RS04850 0.10 -0.8
96,913 + EX31_RS04850 0.10 +1.0
96,913 + EX31_RS04850 0.10 -0.6
96,913 + EX31_RS04850 0.10 +0.5
96,913 + EX31_RS04850 0.10 +0.3
96,913 + EX31_RS04850 0.10 +0.3
96,913 + EX31_RS04850 0.10 -1.7
96,914 - EX31_RS04850 0.10 +0.5
96,914 - EX31_RS04850 0.10 -0.3
96,914 - EX31_RS04850 0.10 -0.5
96,914 - EX31_RS04850 0.10 -0.6
96,914 - EX31_RS04850 0.10 -0.4
96,980 + EX31_RS04850 0.13 +0.4
96,981 - EX31_RS04850 0.13 -0.9
96,981 - EX31_RS04850 0.13 -0.4
96,981 - EX31_RS04850 0.13 +0.6
96,982 + EX31_RS04850 0.13 -0.1
96,983 - EX31_RS04850 0.13 +0.8
97,068 + EX31_RS04850 0.17 -0.2
97,069 - EX31_RS04850 0.17 -0.2
97,069 - EX31_RS04850 0.17 +0.1
97,069 - EX31_RS04850 0.17 +0.4
97,074 + EX31_RS04850 0.17 -0.9
97,125 + EX31_RS04850 0.19 -0.2
97,126 - EX31_RS04850 0.19 +0.4
97,204 + EX31_RS04850 0.23 +0.5
97,205 - EX31_RS04850 0.23 -0.4
97,205 - EX31_RS04850 0.23 -0.1
97,205 - EX31_RS04850 0.23 -0.3
97,205 - EX31_RS04850 0.23 -0.4
97,205 - EX31_RS04850 0.23 +0.2
97,217 + EX31_RS04850 0.23 +0.4
97,311 + EX31_RS04850 0.27 +0.2
97,311 + EX31_RS04850 0.27 -0.0
97,311 + EX31_RS04850 0.27 +0.4
97,315 + EX31_RS04850 0.28 -0.3
97,315 + EX31_RS04850 0.28 -0.6
97,315 + EX31_RS04850 0.28 +0.2
97,315 + EX31_RS04850 0.28 -0.5
97,315 + EX31_RS04850 0.28 -0.1
97,315 + EX31_RS04850 0.28 +0.5
97,315 + EX31_RS04850 0.28 -0.4
97,315 + EX31_RS04850 0.28 -0.1
97,316 - EX31_RS04850 0.28 -0.4
97,316 - EX31_RS04850 0.28 -0.1
97,316 - EX31_RS04850 0.28 -0.0
97,316 - EX31_RS04850 0.28 -0.1
97,316 - EX31_RS04850 0.28 +0.4
97,316 - EX31_RS04850 0.28 +0.5
97,316 - EX31_RS04850 0.28 -0.7
97,316 - EX31_RS04850 0.28 -0.6
97,316 - EX31_RS04850 0.28 -0.0
97,316 - EX31_RS04850 0.28 -0.7
97,316 - EX31_RS04850 0.28 -0.0
97,318 - EX31_RS04850 0.28 +0.0
97,349 + EX31_RS04850 0.29 -0.8
97,350 - EX31_RS04850 0.29 -0.1
97,350 - EX31_RS04850 0.29 +0.1
97,470 + EX31_RS04850 0.34 -0.1
97,482 + EX31_RS04850 0.35 -0.0
97,555 + EX31_RS04850 0.38 -0.5
97,555 + EX31_RS04850 0.38 -1.1
97,555 + EX31_RS04850 0.38 -0.3
97,555 + EX31_RS04850 0.38 +0.5
97,555 + EX31_RS04850 0.38 +0.2
97,555 + EX31_RS04850 0.38 +0.1
97,555 + EX31_RS04850 0.38 +0.6
97,555 + EX31_RS04850 0.38 -1.0
97,556 - EX31_RS04850 0.38 +0.0
97,556 - EX31_RS04850 0.38 -1.0
97,556 - EX31_RS04850 0.38 -0.2
97,556 - EX31_RS04850 0.38 -0.4
97,556 - EX31_RS04850 0.38 -0.3
97,556 - EX31_RS04850 0.38 +0.2
97,556 - EX31_RS04850 0.38 -1.4
97,556 - EX31_RS04850 0.38 -0.7

Or see this region's nucleotide sequence