Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23935 and EX31_RS23940 are separated by 61 nucleotides EX31_RS23940 and EX31_RS23945 overlap by 4 nucleotides EX31_RS23945 and EX31_RS23950 overlap by 4 nucleotides
EX31_RS23935: EX31_RS23935 - ABC transporter substrate-binding protein, at 556,248 to 557,186
_RS23935
EX31_RS23940: EX31_RS23940 - ABC transporter permease, at 557,248 to 558,417
_RS23940
EX31_RS23945: EX31_RS23945 - ABC transporter ATP-binding protein, at 558,414 to 559,358
_RS23945
EX31_RS23950: EX31_RS23950 - ABC transporter permease, at 559,355 to 560,113
_RS23950
Position (kb) 557
558
559 Strain fitness (log2 ratio) -2
-1
0
1
2 at 556.271 kb on - strand at 556.312 kb on + strand at 556.394 kb on + strand, within EX31_RS23935 at 556.394 kb on + strand, within EX31_RS23935 at 556.394 kb on + strand, within EX31_RS23935 at 556.395 kb on - strand, within EX31_RS23935 at 556.395 kb on - strand, within EX31_RS23935 at 556.430 kb on + strand, within EX31_RS23935 at 556.430 kb on + strand, within EX31_RS23935 at 556.431 kb on - strand, within EX31_RS23935 at 556.436 kb on + strand, within EX31_RS23935 at 556.500 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.722 kb on + strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.723 kb on - strand, within EX31_RS23935 at 556.810 kb on - strand, within EX31_RS23935 at 556.810 kb on - strand, within EX31_RS23935 at 556.824 kb on - strand, within EX31_RS23935 at 556.824 kb on - strand, within EX31_RS23935 at 556.872 kb on - strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 556.981 kb on + strand, within EX31_RS23935 at 557.154 kb on + strand at 557.154 kb on + strand at 557.154 kb on + strand at 557.242 kb on - strand at 557.255 kb on - strand at 557.758 kb on + strand, within EX31_RS23940 at 557.875 kb on - strand, within EX31_RS23940 at 557.913 kb on + strand, within EX31_RS23940 at 557.913 kb on + strand, within EX31_RS23940 at 557.913 kb on + strand, within EX31_RS23940 at 558.055 kb on + strand, within EX31_RS23940 at 558.055 kb on + strand, within EX31_RS23940 at 558.218 kb on + strand, within EX31_RS23940 at 558.589 kb on + strand, within EX31_RS23945 at 558.589 kb on + strand, within EX31_RS23945 at 558.590 kb on - strand, within EX31_RS23945 at 558.590 kb on - strand, within EX31_RS23945 at 558.880 kb on + strand, within EX31_RS23945 at 558.880 kb on + strand, within EX31_RS23945 at 558.880 kb on + strand, within EX31_RS23945 at 558.881 kb on - strand, within EX31_RS23945 at 558.881 kb on - strand, within EX31_RS23945 at 558.881 kb on - strand, within EX31_RS23945 at 558.934 kb on + strand, within EX31_RS23945 at 558.960 kb on - strand, within EX31_RS23945 at 558.982 kb on + strand, within EX31_RS23945 at 559.033 kb on + strand, within EX31_RS23945 at 559.135 kb on + strand, within EX31_RS23945
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 556,271 - -1.3 556,312 + -0.6 556,394 + EX31_RS23935 0.16 -1.8 556,394 + EX31_RS23935 0.16 +0.6 556,394 + EX31_RS23935 0.16 -0.0 556,395 - EX31_RS23935 0.16 +0.0 556,395 - EX31_RS23935 0.16 +1.1 556,430 + EX31_RS23935 0.19 -1.7 556,430 + EX31_RS23935 0.19 -1.5 556,431 - EX31_RS23935 0.19 -0.5 556,436 + EX31_RS23935 0.20 +0.5 556,500 + EX31_RS23935 0.27 +2.1 556,722 + EX31_RS23935 0.50 -1.1 556,722 + EX31_RS23935 0.50 +0.2 556,722 + EX31_RS23935 0.50 +0.4 556,722 + EX31_RS23935 0.50 -0.1 556,722 + EX31_RS23935 0.50 -0.1 556,722 + EX31_RS23935 0.50 -0.6 556,722 + EX31_RS23935 0.50 +0.6 556,723 - EX31_RS23935 0.51 -0.3 556,723 - EX31_RS23935 0.51 -0.9 556,723 - EX31_RS23935 0.51 -0.5 556,723 - EX31_RS23935 0.51 -0.1 556,723 - EX31_RS23935 0.51 +0.0 556,723 - EX31_RS23935 0.51 -0.1 556,810 - EX31_RS23935 0.60 -0.2 556,810 - EX31_RS23935 0.60 -0.5 556,824 - EX31_RS23935 0.61 -0.7 556,824 - EX31_RS23935 0.61 +1.2 556,872 - EX31_RS23935 0.66 +0.0 556,981 + EX31_RS23935 0.78 +0.9 556,981 + EX31_RS23935 0.78 -0.3 556,981 + EX31_RS23935 0.78 +0.6 556,981 + EX31_RS23935 0.78 +0.8 557,154 + +0.6 557,154 + -0.3 557,154 + +0.4 557,242 - +0.8 557,255 - -0.7 557,758 + EX31_RS23940 0.44 -0.7 557,875 - EX31_RS23940 0.54 -0.3 557,913 + EX31_RS23940 0.57 -0.5 557,913 + EX31_RS23940 0.57 -0.3 557,913 + EX31_RS23940 0.57 -0.4 558,055 + EX31_RS23940 0.69 -0.1 558,055 + EX31_RS23940 0.69 +0.1 558,218 + EX31_RS23940 0.83 -0.8 558,589 + EX31_RS23945 0.19 +0.5 558,589 + EX31_RS23945 0.19 +0.1 558,590 - EX31_RS23945 0.19 +0.2 558,590 - EX31_RS23945 0.19 -0.0 558,880 + EX31_RS23945 0.49 +0.1 558,880 + EX31_RS23945 0.49 +0.0 558,880 + EX31_RS23945 0.49 -0.4 558,881 - EX31_RS23945 0.49 +0.8 558,881 - EX31_RS23945 0.49 -1.4 558,881 - EX31_RS23945 0.49 -0.3 558,934 + EX31_RS23945 0.55 +1.1 558,960 - EX31_RS23945 0.58 -0.6 558,982 + EX31_RS23945 0.60 +0.9 559,033 + EX31_RS23945 0.66 -0.9 559,135 + EX31_RS23945 0.76 -0.8
Or see this region's nucleotide sequence