Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23345 and EX31_RS23350 are separated by 43 nucleotides EX31_RS23350 and EX31_RS25645 are separated by 0 nucleotides EX31_RS25645 and EX31_RS23355 are separated by 409 nucleotides EX31_RS23355 and EX31_RS23360 are separated by 181 nucleotides
EX31_RS23345: EX31_RS23345 - potassium-transporting ATPase subunit KdpB, at 431,064 to 433,130
_RS23345
EX31_RS23350: EX31_RS23350 - potassium-transporting ATPase subunit KdpA, at 433,174 to 434,862
_RS23350
EX31_RS25645: EX31_RS25645 - K(+)-transporting ATPase subunit F, at 434,863 to 434,952
_RS25645
EX31_RS23355: EX31_RS23355 - YbfA family protein, at 435,362 to 435,568
_RS23355
EX31_RS23360: EX31_RS23360 - DUF1722 domain-containing protein, at 435,750 to 436,703
_RS23360
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 432.524 kb on + strand, within EX31_RS23345 at 432.524 kb on + strand, within EX31_RS23345 at 432.739 kb on + strand, within EX31_RS23345 at 432.740 kb on - strand, within EX31_RS23345 at 432.740 kb on - strand, within EX31_RS23345 at 432.773 kb on + strand, within EX31_RS23345 at 432.774 kb on - strand, within EX31_RS23345 at 433.108 kb on - strand at 433.143 kb on + strand at 433.143 kb on + strand at 433.143 kb on + strand at 433.143 kb on + strand at 433.143 kb on + strand at 433.144 kb on - strand at 433.144 kb on - strand at 433.146 kb on - strand at 433.146 kb on - strand at 433.166 kb on - strand at 433.175 kb on + strand at 433.175 kb on + strand at 433.175 kb on + strand at 433.175 kb on + strand at 433.175 kb on + strand at 433.176 kb on - strand at 433.233 kb on + strand at 433.253 kb on - strand at 433.398 kb on + strand, within EX31_RS23350 at 433.398 kb on + strand, within EX31_RS23350 at 433.398 kb on + strand, within EX31_RS23350 at 433.398 kb on + strand, within EX31_RS23350 at 433.399 kb on - strand, within EX31_RS23350 at 433.399 kb on - strand, within EX31_RS23350 at 433.399 kb on - strand, within EX31_RS23350 at 433.399 kb on - strand, within EX31_RS23350 at 433.399 kb on - strand, within EX31_RS23350 at 433.399 kb on - strand, within EX31_RS23350 at 433.421 kb on + strand, within EX31_RS23350 at 433.421 kb on + strand, within EX31_RS23350 at 433.422 kb on - strand, within EX31_RS23350 at 433.422 kb on - strand, within EX31_RS23350 at 433.422 kb on - strand, within EX31_RS23350 at 433.422 kb on - strand, within EX31_RS23350 at 433.422 kb on - strand, within EX31_RS23350 at 433.422 kb on - strand, within EX31_RS23350 at 433.468 kb on - strand, within EX31_RS23350 at 433.468 kb on - strand, within EX31_RS23350 at 433.490 kb on + strand, within EX31_RS23350 at 433.491 kb on - strand, within EX31_RS23350 at 433.491 kb on - strand, within EX31_RS23350 at 433.623 kb on + strand, within EX31_RS23350 at 433.624 kb on - strand, within EX31_RS23350 at 433.629 kb on - strand, within EX31_RS23350 at 433.652 kb on + strand, within EX31_RS23350 at 433.653 kb on - strand, within EX31_RS23350 at 433.653 kb on - strand, within EX31_RS23350 at 433.687 kb on - strand, within EX31_RS23350 at 433.703 kb on - strand, within EX31_RS23350 at 433.786 kb on - strand, within EX31_RS23350 at 433.800 kb on + strand, within EX31_RS23350 at 433.897 kb on - strand, within EX31_RS23350 at 433.897 kb on - strand, within EX31_RS23350 at 433.908 kb on + strand, within EX31_RS23350 at 433.908 kb on + strand, within EX31_RS23350 at 433.909 kb on - strand, within EX31_RS23350 at 433.910 kb on - strand, within EX31_RS23350 at 433.964 kb on + strand, within EX31_RS23350 at 433.965 kb on - strand, within EX31_RS23350 at 433.965 kb on - strand, within EX31_RS23350 at 433.965 kb on - strand, within EX31_RS23350 at 433.965 kb on - strand, within EX31_RS23350 at 433.965 kb on - strand, within EX31_RS23350 at 433.972 kb on + strand, within EX31_RS23350 at 433.973 kb on - strand, within EX31_RS23350 at 433.973 kb on - strand, within EX31_RS23350 at 434.217 kb on + strand, within EX31_RS23350 at 434.217 kb on + strand, within EX31_RS23350 at 434.217 kb on + strand, within EX31_RS23350 at 434.218 kb on - strand, within EX31_RS23350 at 434.218 kb on - strand, within EX31_RS23350 at 434.221 kb on + strand, within EX31_RS23350 at 434.221 kb on + strand, within EX31_RS23350 at 434.221 kb on + strand, within EX31_RS23350 at 434.222 kb on - strand, within EX31_RS23350 at 434.222 kb on - strand, within EX31_RS23350 at 434.222 kb on - strand, within EX31_RS23350 at 434.222 kb on - strand, within EX31_RS23350 at 434.222 kb on - strand, within EX31_RS23350 at 434.222 kb on - strand, within EX31_RS23350 at 434.222 kb on - strand, within EX31_RS23350 at 434.261 kb on + strand, within EX31_RS23350 at 434.262 kb on - strand, within EX31_RS23350 at 434.282 kb on - strand, within EX31_RS23350 at 434.336 kb on + strand, within EX31_RS23350 at 434.336 kb on + strand, within EX31_RS23350 at 434.336 kb on + strand, within EX31_RS23350 at 434.337 kb on - strand, within EX31_RS23350 at 434.353 kb on + strand, within EX31_RS23350 at 434.353 kb on + strand, within EX31_RS23350 at 434.353 kb on + strand, within EX31_RS23350 at 434.354 kb on - strand, within EX31_RS23350 at 434.354 kb on - strand, within EX31_RS23350 at 434.487 kb on - strand, within EX31_RS23350 at 434.510 kb on + strand, within EX31_RS23350 at 434.554 kb on - strand, within EX31_RS23350 at 434.655 kb on + strand, within EX31_RS23350 at 434.655 kb on + strand, within EX31_RS23350 at 434.656 kb on - strand, within EX31_RS23350 at 434.656 kb on - strand, within EX31_RS23350 at 434.656 kb on - strand, within EX31_RS23350 at 434.656 kb on - strand, within EX31_RS23350 at 434.656 kb on - strand, within EX31_RS23350 at 434.659 kb on + strand, within EX31_RS23350 at 434.659 kb on + strand, within EX31_RS23350 at 434.660 kb on - strand, within EX31_RS23350 at 434.660 kb on - strand, within EX31_RS23350 at 434.660 kb on - strand, within EX31_RS23350 at 434.660 kb on - strand, within EX31_RS23350 at 434.660 kb on - strand, within EX31_RS23350 at 434.660 kb on - strand, within EX31_RS23350 at 434.678 kb on + strand, within EX31_RS23350 at 434.679 kb on - strand, within EX31_RS23350 at 434.722 kb on + strand at 434.722 kb on + strand at 434.723 kb on - strand at 434.723 kb on - strand at 434.748 kb on + strand at 434.749 kb on - strand at 434.790 kb on + strand at 434.791 kb on - strand at 434.827 kb on - strand at 434.827 kb on - strand at 434.827 kb on - strand at 434.827 kb on - strand at 434.842 kb on + strand at 434.891 kb on + strand, within EX31_RS25645 at 434.923 kb on + strand, within EX31_RS25645 at 434.939 kb on - strand, within EX31_RS25645 at 434.977 kb on + strand at 435.048 kb on + strand at 435.098 kb on + strand at 435.171 kb on + strand at 435.171 kb on + strand at 435.171 kb on + strand at 435.172 kb on - strand at 435.172 kb on - strand at 435.195 kb on + strand at 435.196 kb on - strand at 435.200 kb on - strand at 435.306 kb on + strand at 435.321 kb on - strand at 435.321 kb on - strand at 435.321 kb on - strand at 435.321 kb on - strand at 435.321 kb on - strand at 435.321 kb on - strand at 435.371 kb on + strand at 435.372 kb on - strand at 435.380 kb on + strand at 435.381 kb on - strand at 435.381 kb on - strand at 435.396 kb on + strand, within EX31_RS23355 at 435.485 kb on + strand, within EX31_RS23355 at 435.485 kb on + strand, within EX31_RS23355 at 435.485 kb on + strand, within EX31_RS23355 at 435.485 kb on + strand, within EX31_RS23355 at 435.485 kb on + strand, within EX31_RS23355 at 435.485 kb on + strand, within EX31_RS23355 at 435.485 kb on + strand, within EX31_RS23355 at 435.486 kb on - strand, within EX31_RS23355 at 435.486 kb on - strand, within EX31_RS23355 at 435.486 kb on - strand, within EX31_RS23355 at 435.486 kb on - strand, within EX31_RS23355 at 435.486 kb on - strand, within EX31_RS23355 at 435.486 kb on - strand, within EX31_RS23355 at 435.489 kb on + strand, within EX31_RS23355 at 435.489 kb on + strand, within EX31_RS23355 at 435.490 kb on - strand, within EX31_RS23355 at 435.490 kb on - strand, within EX31_RS23355 at 435.564 kb on - strand at 435.571 kb on + strand at 435.572 kb on - strand at 435.628 kb on + strand at 435.650 kb on - strand at 435.667 kb on + strand at 435.667 kb on + strand at 435.668 kb on - strand at 435.679 kb on + strand at 435.685 kb on + strand at 435.685 kb on + strand at 435.685 kb on + strand at 435.685 kb on + strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.687 kb on + strand at 435.687 kb on + strand at 435.687 kb on + strand at 435.687 kb on + strand at 435.688 kb on - strand at 435.688 kb on - strand at 435.688 kb on - strand at 435.688 kb on - strand at 435.688 kb on - strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.691 kb on + strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.692 kb on - strand at 435.718 kb on + strand at 435.718 kb on + strand at 435.719 kb on - strand at 435.821 kb on + strand at 435.858 kb on + strand, within EX31_RS23360 at 435.858 kb on + strand, within EX31_RS23360 at 435.858 kb on + strand, within EX31_RS23360 at 435.858 kb on + strand, within EX31_RS23360 at 435.859 kb on - strand, within EX31_RS23360 at 435.859 kb on - strand, within EX31_RS23360 at 435.859 kb on - strand, within EX31_RS23360
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 432,524 + EX31_RS23345 0.71 +0.3 432,524 + EX31_RS23345 0.71 -0.3 432,739 + EX31_RS23345 0.81 +0.4 432,740 - EX31_RS23345 0.81 -0.6 432,740 - EX31_RS23345 0.81 +0.1 432,773 + EX31_RS23345 0.83 +1.8 432,774 - EX31_RS23345 0.83 -0.7 433,108 - -0.5 433,143 + -1.3 433,143 + -0.4 433,143 + -0.8 433,143 + +0.2 433,143 + -0.3 433,144 - -0.8 433,144 - +0.5 433,146 - +1.0 433,146 - -0.6 433,166 - +0.6 433,175 + -0.4 433,175 + +0.1 433,175 + +0.4 433,175 + +0.1 433,175 + -1.0 433,176 - -0.0 433,233 + -0.9 433,253 - +0.3 433,398 + EX31_RS23350 0.13 -0.4 433,398 + EX31_RS23350 0.13 -1.3 433,398 + EX31_RS23350 0.13 +0.1 433,398 + EX31_RS23350 0.13 +0.1 433,399 - EX31_RS23350 0.13 -1.8 433,399 - EX31_RS23350 0.13 +0.4 433,399 - EX31_RS23350 0.13 +0.8 433,399 - EX31_RS23350 0.13 +0.3 433,399 - EX31_RS23350 0.13 -0.4 433,399 - EX31_RS23350 0.13 -1.0 433,421 + EX31_RS23350 0.15 +0.6 433,421 + EX31_RS23350 0.15 -0.0 433,422 - EX31_RS23350 0.15 +0.5 433,422 - EX31_RS23350 0.15 +0.9 433,422 - EX31_RS23350 0.15 -0.2 433,422 - EX31_RS23350 0.15 -0.1 433,422 - EX31_RS23350 0.15 -0.6 433,422 - EX31_RS23350 0.15 +0.5 433,468 - EX31_RS23350 0.17 -0.3 433,468 - EX31_RS23350 0.17 -0.5 433,490 + EX31_RS23350 0.19 -1.1 433,491 - EX31_RS23350 0.19 +0.6 433,491 - EX31_RS23350 0.19 +0.1 433,623 + EX31_RS23350 0.27 +0.4 433,624 - EX31_RS23350 0.27 +0.7 433,629 - EX31_RS23350 0.27 -0.6 433,652 + EX31_RS23350 0.28 -0.4 433,653 - EX31_RS23350 0.28 +0.2 433,653 - EX31_RS23350 0.28 -0.1 433,687 - EX31_RS23350 0.30 -0.5 433,703 - EX31_RS23350 0.31 -1.3 433,786 - EX31_RS23350 0.36 -0.6 433,800 + EX31_RS23350 0.37 -0.5 433,897 - EX31_RS23350 0.43 -0.7 433,897 - EX31_RS23350 0.43 -0.2 433,908 + EX31_RS23350 0.43 +0.2 433,908 + EX31_RS23350 0.43 -2.3 433,909 - EX31_RS23350 0.44 +0.1 433,910 - EX31_RS23350 0.44 -1.5 433,964 + EX31_RS23350 0.47 -0.3 433,965 - EX31_RS23350 0.47 +0.1 433,965 - EX31_RS23350 0.47 +0.7 433,965 - EX31_RS23350 0.47 +0.5 433,965 - EX31_RS23350 0.47 -1.5 433,965 - EX31_RS23350 0.47 -0.2 433,972 + EX31_RS23350 0.47 +0.8 433,973 - EX31_RS23350 0.47 +0.4 433,973 - EX31_RS23350 0.47 -0.5 434,217 + EX31_RS23350 0.62 +0.4 434,217 + EX31_RS23350 0.62 +0.2 434,217 + EX31_RS23350 0.62 -1.0 434,218 - EX31_RS23350 0.62 +0.3 434,218 - EX31_RS23350 0.62 -0.8 434,221 + EX31_RS23350 0.62 -0.4 434,221 + EX31_RS23350 0.62 +0.1 434,221 + EX31_RS23350 0.62 +0.1 434,222 - EX31_RS23350 0.62 +0.6 434,222 - EX31_RS23350 0.62 +0.2 434,222 - EX31_RS23350 0.62 -0.3 434,222 - EX31_RS23350 0.62 -0.7 434,222 - EX31_RS23350 0.62 -0.2 434,222 - EX31_RS23350 0.62 -0.3 434,222 - EX31_RS23350 0.62 +0.2 434,261 + EX31_RS23350 0.64 -0.5 434,262 - EX31_RS23350 0.64 -1.1 434,282 - EX31_RS23350 0.66 +0.1 434,336 + EX31_RS23350 0.69 +0.5 434,336 + EX31_RS23350 0.69 +0.0 434,336 + EX31_RS23350 0.69 -0.4 434,337 - EX31_RS23350 0.69 +0.3 434,353 + EX31_RS23350 0.70 -0.3 434,353 + EX31_RS23350 0.70 +1.3 434,353 + EX31_RS23350 0.70 -0.3 434,354 - EX31_RS23350 0.70 -0.1 434,354 - EX31_RS23350 0.70 +0.5 434,487 - EX31_RS23350 0.78 +1.0 434,510 + EX31_RS23350 0.79 +0.3 434,554 - EX31_RS23350 0.82 +0.2 434,655 + EX31_RS23350 0.88 +0.0 434,655 + EX31_RS23350 0.88 -0.6 434,656 - EX31_RS23350 0.88 +0.5 434,656 - EX31_RS23350 0.88 -0.8 434,656 - EX31_RS23350 0.88 -1.5 434,656 - EX31_RS23350 0.88 -0.4 434,656 - EX31_RS23350 0.88 -2.4 434,659 + EX31_RS23350 0.88 -1.3 434,659 + EX31_RS23350 0.88 -0.4 434,660 - EX31_RS23350 0.88 -0.0 434,660 - EX31_RS23350 0.88 -0.3 434,660 - EX31_RS23350 0.88 -0.3 434,660 - EX31_RS23350 0.88 -0.8 434,660 - EX31_RS23350 0.88 +0.2 434,660 - EX31_RS23350 0.88 -2.1 434,678 + EX31_RS23350 0.89 -0.6 434,679 - EX31_RS23350 0.89 -0.3 434,722 + -0.3 434,722 + -0.3 434,723 - -0.2 434,723 - -0.8 434,748 + -0.6 434,749 - -0.7 434,790 + -0.2 434,791 - -2.3 434,827 - -1.0 434,827 - +0.8 434,827 - +0.2 434,827 - +0.2 434,842 + -0.5 434,891 + EX31_RS25645 0.31 +1.4 434,923 + EX31_RS25645 0.67 +0.1 434,939 - EX31_RS25645 0.84 +0.3 434,977 + +0.1 435,048 + +0.3 435,098 + +0.3 435,171 + +1.0 435,171 + -0.1 435,171 + -0.0 435,172 - -0.3 435,172 - -1.0 435,195 + +1.0 435,196 - +1.3 435,200 - +0.1 435,306 + +0.3 435,321 - +0.1 435,321 - -0.2 435,321 - +0.8 435,321 - +0.1 435,321 - +0.5 435,321 - -0.7 435,371 + +0.4 435,372 - +0.7 435,380 + +0.2 435,381 - +0.1 435,381 - -1.0 435,396 + EX31_RS23355 0.16 +1.1 435,485 + EX31_RS23355 0.59 -0.0 435,485 + EX31_RS23355 0.59 -0.2 435,485 + EX31_RS23355 0.59 -0.3 435,485 + EX31_RS23355 0.59 -0.1 435,485 + EX31_RS23355 0.59 -2.6 435,485 + EX31_RS23355 0.59 -0.4 435,485 + EX31_RS23355 0.59 +0.3 435,486 - EX31_RS23355 0.60 +0.6 435,486 - EX31_RS23355 0.60 -0.6 435,486 - EX31_RS23355 0.60 +0.4 435,486 - EX31_RS23355 0.60 -0.2 435,486 - EX31_RS23355 0.60 -0.1 435,486 - EX31_RS23355 0.60 -1.1 435,489 + EX31_RS23355 0.61 -0.2 435,489 + EX31_RS23355 0.61 +0.7 435,490 - EX31_RS23355 0.62 -2.5 435,490 - EX31_RS23355 0.62 -0.6 435,564 - -0.1 435,571 + +0.1 435,572 - -2.9 435,628 + -0.6 435,650 - -0.2 435,667 + +0.5 435,667 + -0.2 435,668 - +0.9 435,679 + +0.4 435,685 + +0.3 435,685 + -0.3 435,685 + -0.0 435,685 + -0.5 435,686 - -0.5 435,686 - +0.1 435,687 + -1.6 435,687 + -0.7 435,687 + -0.0 435,687 + -2.5 435,688 - +0.4 435,688 - +0.5 435,688 - -0.5 435,688 - +0.2 435,688 - -0.1 435,691 + +0.2 435,691 + +0.1 435,691 + -1.3 435,691 + +0.6 435,691 + +0.4 435,691 + +0.5 435,691 + -0.3 435,691 + -1.7 435,691 + -0.7 435,691 + -0.1 435,691 + +0.1 435,691 + -0.1 435,692 - -0.1 435,692 - +0.6 435,692 - +0.6 435,692 - -0.2 435,692 - -0.2 435,692 - +0.4 435,692 - +0.3 435,692 - -0.2 435,692 - -0.5 435,718 + +0.6 435,718 + +0.1 435,719 - -0.1 435,821 + -0.5 435,858 + EX31_RS23360 0.11 -1.5 435,858 + EX31_RS23360 0.11 -0.2 435,858 + EX31_RS23360 0.11 -0.3 435,858 + EX31_RS23360 0.11 +0.5 435,859 - EX31_RS23360 0.11 -0.9 435,859 - EX31_RS23360 0.11 -0.5 435,859 - EX31_RS23360 0.11 +0.5
Or see this region's nucleotide sequence