Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21695 and EX31_RS21700 are separated by 278 nucleotides EX31_RS21700 and EX31_RS21705 are separated by 190 nucleotides
EX31_RS21695: EX31_RS21695 - tagatose-bisphosphate aldolase subunit GatZ, at 82,662 to 83,957
_RS21695
EX31_RS21700: EX31_RS21700 - DeoR/GlpR transcriptional regulator, at 84,236 to 85,018
_RS21700
EX31_RS21705: EX31_RS21705 - ABC transporter substrate-binding protein, at 85,209 to 85,988
_RS21705
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 83.319 kb on + strand, within EX31_RS21695 at 83.319 kb on + strand, within EX31_RS21695 at 83.319 kb on + strand, within EX31_RS21695 at 83.320 kb on - strand, within EX31_RS21695 at 83.320 kb on - strand, within EX31_RS21695 at 83.461 kb on + strand, within EX31_RS21695 at 83.461 kb on + strand, within EX31_RS21695 at 83.461 kb on + strand, within EX31_RS21695 at 83.461 kb on + strand, within EX31_RS21695 at 83.462 kb on - strand, within EX31_RS21695 at 83.462 kb on - strand, within EX31_RS21695 at 83.462 kb on - strand, within EX31_RS21695 at 83.462 kb on - strand, within EX31_RS21695 at 83.462 kb on - strand, within EX31_RS21695 at 83.514 kb on + strand, within EX31_RS21695 at 83.515 kb on - strand, within EX31_RS21695 at 83.722 kb on - strand, within EX31_RS21695 at 83.792 kb on - strand, within EX31_RS21695 at 83.808 kb on + strand, within EX31_RS21695 at 83.809 kb on - strand, within EX31_RS21695 at 84.110 kb on - strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.148 kb on + strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.149 kb on - strand at 84.183 kb on + strand at 84.184 kb on - strand at 84.184 kb on - strand at 84.213 kb on + strand at 84.213 kb on + strand at 84.213 kb on + strand at 84.234 kb on + strand at 84.241 kb on + strand at 84.241 kb on + strand at 84.242 kb on - strand at 84.246 kb on - strand at 84.473 kb on + strand, within EX31_RS21700 at 84.473 kb on + strand, within EX31_RS21700 at 84.473 kb on + strand, within EX31_RS21700 at 84.473 kb on + strand, within EX31_RS21700 at 84.474 kb on - strand, within EX31_RS21700 at 84.474 kb on - strand, within EX31_RS21700 at 84.645 kb on + strand, within EX31_RS21700 at 84.646 kb on - strand, within EX31_RS21700 at 84.646 kb on - strand, within EX31_RS21700 at 84.646 kb on - strand, within EX31_RS21700 at 84.649 kb on - strand, within EX31_RS21700 at 84.693 kb on + strand, within EX31_RS21700 at 84.714 kb on + strand, within EX31_RS21700 at 84.715 kb on - strand, within EX31_RS21700 at 84.715 kb on - strand, within EX31_RS21700 at 84.734 kb on + strand, within EX31_RS21700 at 84.734 kb on + strand, within EX31_RS21700 at 84.734 kb on + strand, within EX31_RS21700 at 84.814 kb on + strand, within EX31_RS21700 at 84.814 kb on + strand, within EX31_RS21700 at 84.814 kb on + strand, within EX31_RS21700 at 84.815 kb on - strand, within EX31_RS21700 at 84.815 kb on - strand, within EX31_RS21700 at 84.824 kb on + strand, within EX31_RS21700 at 84.824 kb on + strand, within EX31_RS21700 at 84.824 kb on + strand, within EX31_RS21700 at 84.825 kb on - strand, within EX31_RS21700 at 84.826 kb on + strand, within EX31_RS21700 at 84.826 kb on + strand, within EX31_RS21700 at 84.826 kb on + strand, within EX31_RS21700 at 84.826 kb on + strand, within EX31_RS21700 at 84.826 kb on + strand, within EX31_RS21700 at 84.826 kb on + strand, within EX31_RS21700 at 84.827 kb on - strand, within EX31_RS21700 at 84.827 kb on - strand, within EX31_RS21700 at 84.829 kb on + strand, within EX31_RS21700 at 84.830 kb on - strand, within EX31_RS21700 at 84.830 kb on - strand, within EX31_RS21700 at 84.838 kb on + strand, within EX31_RS21700 at 84.838 kb on + strand, within EX31_RS21700 at 84.842 kb on - strand, within EX31_RS21700 at 84.907 kb on + strand, within EX31_RS21700 at 84.907 kb on + strand, within EX31_RS21700 at 84.907 kb on + strand, within EX31_RS21700 at 84.908 kb on - strand, within EX31_RS21700 at 84.922 kb on + strand, within EX31_RS21700 at 84.940 kb on + strand at 84.941 kb on - strand at 84.941 kb on - strand at 85.056 kb on + strand at 85.072 kb on + strand at 85.141 kb on + strand at 85.141 kb on + strand at 85.142 kb on - strand at 85.142 kb on - strand at 85.142 kb on - strand at 85.142 kb on - strand at 85.142 kb on - strand at 85.142 kb on - strand at 85.142 kb on - strand at 85.142 kb on - strand at 85.147 kb on + strand at 85.148 kb on - strand at 85.224 kb on - strand at 85.224 kb on - strand at 85.226 kb on - strand at 85.244 kb on - strand at 85.244 kb on - strand at 85.244 kb on - strand at 85.244 kb on - strand at 85.244 kb on - strand at 85.264 kb on + strand at 85.264 kb on + strand at 85.265 kb on - strand at 85.265 kb on - strand at 85.265 kb on - strand at 85.282 kb on - strand at 85.298 kb on + strand, within EX31_RS21705 at 85.299 kb on - strand, within EX31_RS21705 at 85.364 kb on - strand, within EX31_RS21705 at 85.364 kb on - strand, within EX31_RS21705 at 85.399 kb on + strand, within EX31_RS21705 at 85.400 kb on - strand, within EX31_RS21705 at 85.400 kb on - strand, within EX31_RS21705 at 85.467 kb on + strand, within EX31_RS21705 at 85.467 kb on + strand, within EX31_RS21705 at 85.468 kb on - strand, within EX31_RS21705 at 85.468 kb on - strand, within EX31_RS21705 at 85.468 kb on - strand, within EX31_RS21705 at 85.514 kb on - strand, within EX31_RS21705 at 85.558 kb on + strand, within EX31_RS21705 at 85.559 kb on - strand, within EX31_RS21705 at 85.662 kb on + strand, within EX31_RS21705 at 85.662 kb on + strand, within EX31_RS21705 at 85.670 kb on - strand, within EX31_RS21705 at 85.701 kb on - strand, within EX31_RS21705 at 85.766 kb on + strand, within EX31_RS21705 at 85.767 kb on - strand, within EX31_RS21705 at 85.777 kb on + strand, within EX31_RS21705 at 85.777 kb on + strand, within EX31_RS21705 at 85.777 kb on + strand, within EX31_RS21705 at 85.833 kb on + strand, within EX31_RS21705 at 85.834 kb on - strand, within EX31_RS21705 at 85.982 kb on + strand at 86.005 kb on + strand at 86.005 kb on + strand at 86.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 83,319 + EX31_RS21695 0.51 -0.5 83,319 + EX31_RS21695 0.51 +1.4 83,319 + EX31_RS21695 0.51 +0.4 83,320 - EX31_RS21695 0.51 -0.1 83,320 - EX31_RS21695 0.51 -0.4 83,461 + EX31_RS21695 0.62 +0.3 83,461 + EX31_RS21695 0.62 -0.3 83,461 + EX31_RS21695 0.62 +1.0 83,461 + EX31_RS21695 0.62 -0.5 83,462 - EX31_RS21695 0.62 +0.8 83,462 - EX31_RS21695 0.62 -0.2 83,462 - EX31_RS21695 0.62 -0.1 83,462 - EX31_RS21695 0.62 +0.2 83,462 - EX31_RS21695 0.62 -0.0 83,514 + EX31_RS21695 0.66 -0.3 83,515 - EX31_RS21695 0.66 +0.5 83,722 - EX31_RS21695 0.82 -0.9 83,792 - EX31_RS21695 0.87 -1.2 83,808 + EX31_RS21695 0.88 -0.0 83,809 - EX31_RS21695 0.89 -0.7 84,110 - -0.8 84,148 + +0.1 84,148 + +0.2 84,148 + -0.7 84,148 + +0.3 84,148 + +0.2 84,148 + +0.3 84,148 + -1.2 84,148 + -0.3 84,148 + +1.1 84,148 + -0.2 84,148 + +0.6 84,148 + +0.4 84,148 + -0.9 84,148 + -0.1 84,148 + -0.5 84,148 + -0.8 84,148 + -0.4 84,148 + -0.6 84,148 + -0.4 84,148 + +0.0 84,148 + +0.1 84,148 + -2.0 84,148 + +0.8 84,148 + -0.2 84,149 - -0.0 84,149 - -0.1 84,149 - +1.2 84,149 - +1.1 84,149 - -0.7 84,149 - -2.7 84,149 - +0.5 84,149 - -1.6 84,149 - -0.2 84,149 - -1.6 84,149 - +0.3 84,149 - -0.2 84,149 - -0.7 84,149 - +0.5 84,149 - -0.6 84,149 - -0.8 84,149 - +0.1 84,149 - -0.6 84,149 - -0.4 84,149 - +0.1 84,149 - -0.6 84,183 + +0.2 84,184 - -0.6 84,184 - -0.1 84,213 + +0.7 84,213 + +0.3 84,213 + +0.7 84,234 + +0.5 84,241 + +0.4 84,241 + +0.2 84,242 - +1.4 84,246 - +0.1 84,473 + EX31_RS21700 0.30 +0.1 84,473 + EX31_RS21700 0.30 -0.2 84,473 + EX31_RS21700 0.30 -0.3 84,473 + EX31_RS21700 0.30 -1.6 84,474 - EX31_RS21700 0.30 -0.4 84,474 - EX31_RS21700 0.30 -0.3 84,645 + EX31_RS21700 0.52 -0.4 84,646 - EX31_RS21700 0.52 -0.9 84,646 - EX31_RS21700 0.52 +0.9 84,646 - EX31_RS21700 0.52 -2.8 84,649 - EX31_RS21700 0.53 -0.3 84,693 + EX31_RS21700 0.58 +0.6 84,714 + EX31_RS21700 0.61 +0.0 84,715 - EX31_RS21700 0.61 -0.2 84,715 - EX31_RS21700 0.61 -0.0 84,734 + EX31_RS21700 0.64 +1.3 84,734 + EX31_RS21700 0.64 -1.1 84,734 + EX31_RS21700 0.64 +0.4 84,814 + EX31_RS21700 0.74 +0.0 84,814 + EX31_RS21700 0.74 +0.4 84,814 + EX31_RS21700 0.74 +0.2 84,815 - EX31_RS21700 0.74 -1.8 84,815 - EX31_RS21700 0.74 -0.9 84,824 + EX31_RS21700 0.75 -0.3 84,824 + EX31_RS21700 0.75 -0.5 84,824 + EX31_RS21700 0.75 +0.2 84,825 - EX31_RS21700 0.75 -0.9 84,826 + EX31_RS21700 0.75 -2.6 84,826 + EX31_RS21700 0.75 +0.2 84,826 + EX31_RS21700 0.75 +0.0 84,826 + EX31_RS21700 0.75 -0.5 84,826 + EX31_RS21700 0.75 -0.0 84,826 + EX31_RS21700 0.75 -0.2 84,827 - EX31_RS21700 0.75 +0.1 84,827 - EX31_RS21700 0.75 +0.1 84,829 + EX31_RS21700 0.76 -0.2 84,830 - EX31_RS21700 0.76 -0.2 84,830 - EX31_RS21700 0.76 -0.5 84,838 + EX31_RS21700 0.77 -0.2 84,838 + EX31_RS21700 0.77 +0.9 84,842 - EX31_RS21700 0.77 -0.9 84,907 + EX31_RS21700 0.86 +0.2 84,907 + EX31_RS21700 0.86 -0.4 84,907 + EX31_RS21700 0.86 -0.7 84,908 - EX31_RS21700 0.86 -1.1 84,922 + EX31_RS21700 0.88 +0.1 84,940 + +0.9 84,941 - +0.9 84,941 - +1.0 85,056 + -0.3 85,072 + +1.8 85,141 + -0.5 85,141 + -0.8 85,142 - +0.4 85,142 - -0.1 85,142 - +0.0 85,142 - -0.5 85,142 - -0.7 85,142 - -0.1 85,142 - -0.2 85,142 - -0.6 85,147 + +0.1 85,148 - -0.8 85,224 - -1.3 85,224 - +1.6 85,226 - +0.3 85,244 - +0.3 85,244 - -0.4 85,244 - +0.8 85,244 - -0.2 85,244 - -0.2 85,264 + -0.1 85,264 + +0.5 85,265 - -0.7 85,265 - +0.5 85,265 - +0.1 85,282 - +0.3 85,298 + EX31_RS21705 0.11 +1.6 85,299 - EX31_RS21705 0.12 +0.9 85,364 - EX31_RS21705 0.20 +0.4 85,364 - EX31_RS21705 0.20 -1.8 85,399 + EX31_RS21705 0.24 +0.0 85,400 - EX31_RS21705 0.24 +0.4 85,400 - EX31_RS21705 0.24 +0.9 85,467 + EX31_RS21705 0.33 -0.2 85,467 + EX31_RS21705 0.33 +1.3 85,468 - EX31_RS21705 0.33 +0.5 85,468 - EX31_RS21705 0.33 -0.3 85,468 - EX31_RS21705 0.33 -0.1 85,514 - EX31_RS21705 0.39 +0.5 85,558 + EX31_RS21705 0.45 -0.7 85,559 - EX31_RS21705 0.45 -1.6 85,662 + EX31_RS21705 0.58 +0.0 85,662 + EX31_RS21705 0.58 +0.6 85,670 - EX31_RS21705 0.59 +0.6 85,701 - EX31_RS21705 0.63 -1.7 85,766 + EX31_RS21705 0.71 +0.1 85,767 - EX31_RS21705 0.72 +0.6 85,777 + EX31_RS21705 0.73 -1.0 85,777 + EX31_RS21705 0.73 -0.4 85,777 + EX31_RS21705 0.73 -0.0 85,833 + EX31_RS21705 0.80 +0.3 85,834 - EX31_RS21705 0.80 -1.4 85,982 + -0.4 86,005 + +0.1 86,005 + +0.5 86,016 - +0.4
Or see this region's nucleotide sequence