Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17945 and EX31_RS17950 are separated by 87 nucleotides EX31_RS17950 and EX31_RS17955 are separated by 198 nucleotides
EX31_RS17945: EX31_RS17945 - iron ABC transporter permease, at 148,583 to 150,352
_RS17945
EX31_RS17950: EX31_RS17950 - ABC transporter substrate-binding protein, at 150,440 to 151,528
_RS17950
EX31_RS17955: EX31_RS17955 - SDR family oxidoreductase, at 151,727 to 152,617
_RS17955
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 149.555 kb on - strand, within EX31_RS17945 at 149.555 kb on - strand, within EX31_RS17945 at 149.560 kb on + strand, within EX31_RS17945 at 149.598 kb on + strand, within EX31_RS17945 at 149.598 kb on + strand, within EX31_RS17945 at 149.599 kb on - strand, within EX31_RS17945 at 149.599 kb on - strand, within EX31_RS17945 at 149.632 kb on - strand, within EX31_RS17945 at 149.637 kb on + strand, within EX31_RS17945 at 149.637 kb on + strand, within EX31_RS17945 at 149.637 kb on + strand, within EX31_RS17945 at 149.637 kb on + strand, within EX31_RS17945 at 149.638 kb on - strand, within EX31_RS17945 at 149.638 kb on - strand, within EX31_RS17945 at 149.638 kb on - strand, within EX31_RS17945 at 149.638 kb on - strand, within EX31_RS17945 at 149.638 kb on - strand, within EX31_RS17945 at 149.731 kb on - strand, within EX31_RS17945 at 149.852 kb on - strand, within EX31_RS17945 at 149.852 kb on - strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.853 kb on + strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.854 kb on - strand, within EX31_RS17945 at 149.913 kb on + strand, within EX31_RS17945 at 149.914 kb on - strand, within EX31_RS17945 at 149.914 kb on - strand, within EX31_RS17945 at 149.914 kb on - strand, within EX31_RS17945 at 149.914 kb on - strand, within EX31_RS17945 at 150.003 kb on - strand, within EX31_RS17945 at 150.003 kb on - strand, within EX31_RS17945 at 150.003 kb on - strand, within EX31_RS17945 at 150.003 kb on - strand, within EX31_RS17945 at 150.003 kb on - strand, within EX31_RS17945 at 150.003 kb on - strand, within EX31_RS17945 at 150.005 kb on + strand, within EX31_RS17945 at 150.006 kb on - strand, within EX31_RS17945 at 150.006 kb on - strand, within EX31_RS17945 at 150.097 kb on + strand, within EX31_RS17945 at 150.254 kb on + strand at 150.279 kb on + strand at 150.279 kb on + strand at 150.355 kb on + strand at 150.355 kb on + strand at 150.355 kb on + strand at 150.355 kb on + strand at 150.355 kb on + strand at 150.355 kb on + strand at 150.355 kb on + strand at 150.355 kb on + strand at 150.356 kb on - strand at 150.356 kb on - strand at 150.356 kb on - strand at 150.433 kb on + strand at 150.433 kb on + strand at 150.433 kb on + strand at 150.434 kb on - strand at 150.434 kb on - strand at 150.434 kb on - strand at 150.441 kb on + strand at 150.441 kb on + strand at 150.442 kb on - strand at 150.442 kb on - strand at 150.474 kb on + strand at 150.475 kb on - strand at 150.475 kb on - strand at 150.475 kb on - strand at 150.475 kb on - strand at 150.562 kb on + strand, within EX31_RS17950 at 150.657 kb on + strand, within EX31_RS17950 at 150.658 kb on - strand, within EX31_RS17950 at 150.736 kb on - strand, within EX31_RS17950 at 150.736 kb on - strand, within EX31_RS17950 at 150.809 kb on - strand, within EX31_RS17950 at 150.876 kb on - strand, within EX31_RS17950 at 150.876 kb on - strand, within EX31_RS17950 at 150.979 kb on - strand, within EX31_RS17950 at 151.083 kb on + strand, within EX31_RS17950 at 151.083 kb on + strand, within EX31_RS17950 at 151.087 kb on + strand, within EX31_RS17950 at 151.088 kb on - strand, within EX31_RS17950 at 151.088 kb on - strand, within EX31_RS17950 at 151.088 kb on - strand, within EX31_RS17950 at 151.104 kb on + strand, within EX31_RS17950 at 151.104 kb on + strand, within EX31_RS17950 at 151.105 kb on - strand, within EX31_RS17950 at 151.105 kb on - strand, within EX31_RS17950 at 151.105 kb on - strand, within EX31_RS17950 at 151.105 kb on - strand, within EX31_RS17950 at 151.171 kb on + strand, within EX31_RS17950 at 151.171 kb on + strand, within EX31_RS17950 at 151.171 kb on + strand, within EX31_RS17950 at 151.172 kb on - strand, within EX31_RS17950 at 151.172 kb on - strand, within EX31_RS17950 at 151.173 kb on + strand, within EX31_RS17950 at 151.174 kb on - strand, within EX31_RS17950 at 151.271 kb on - strand, within EX31_RS17950 at 151.272 kb on + strand, within EX31_RS17950 at 151.273 kb on - strand, within EX31_RS17950 at 151.273 kb on - strand, within EX31_RS17950 at 151.273 kb on - strand, within EX31_RS17950 at 151.273 kb on - strand, within EX31_RS17950 at 151.281 kb on + strand, within EX31_RS17950 at 151.282 kb on - strand, within EX31_RS17950 at 151.282 kb on - strand, within EX31_RS17950 at 151.308 kb on + strand, within EX31_RS17950 at 151.309 kb on - strand, within EX31_RS17950 at 151.309 kb on - strand, within EX31_RS17950 at 151.329 kb on + strand, within EX31_RS17950 at 151.386 kb on + strand, within EX31_RS17950 at 151.387 kb on - strand, within EX31_RS17950 at 151.487 kb on + strand at 151.487 kb on + strand at 151.487 kb on + strand at 151.510 kb on + strand at 151.510 kb on + strand at 151.511 kb on - strand at 151.515 kb on - strand at 151.529 kb on + strand at 151.596 kb on + strand at 151.610 kb on + strand at 151.610 kb on + strand at 151.650 kb on + strand at 151.650 kb on + strand at 151.650 kb on + strand at 151.651 kb on - strand at 151.671 kb on - strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.729 kb on - strand at 151.729 kb on - strand at 151.763 kb on + strand at 151.776 kb on - strand at 151.796 kb on - strand at 151.826 kb on - strand, within EX31_RS17955 at 152.068 kb on - strand, within EX31_RS17955 at 152.311 kb on + strand, within EX31_RS17955 at 152.312 kb on - strand, within EX31_RS17955 at 152.337 kb on - strand, within EX31_RS17955
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 149,555 - EX31_RS17945 0.55 +0.1 149,555 - EX31_RS17945 0.55 -0.7 149,560 + EX31_RS17945 0.55 -0.1 149,598 + EX31_RS17945 0.57 +1.4 149,598 + EX31_RS17945 0.57 +0.2 149,599 - EX31_RS17945 0.57 -0.4 149,599 - EX31_RS17945 0.57 -0.5 149,632 - EX31_RS17945 0.59 -1.0 149,637 + EX31_RS17945 0.60 -0.1 149,637 + EX31_RS17945 0.60 +0.0 149,637 + EX31_RS17945 0.60 -0.2 149,637 + EX31_RS17945 0.60 +0.7 149,638 - EX31_RS17945 0.60 -1.0 149,638 - EX31_RS17945 0.60 -0.9 149,638 - EX31_RS17945 0.60 +0.5 149,638 - EX31_RS17945 0.60 +0.2 149,638 - EX31_RS17945 0.60 -0.4 149,731 - EX31_RS17945 0.65 +0.4 149,852 - EX31_RS17945 0.72 -0.2 149,852 - EX31_RS17945 0.72 -1.9 149,853 + EX31_RS17945 0.72 +0.9 149,853 + EX31_RS17945 0.72 -0.2 149,853 + EX31_RS17945 0.72 -0.6 149,853 + EX31_RS17945 0.72 +0.5 149,853 + EX31_RS17945 0.72 -0.5 149,853 + EX31_RS17945 0.72 +0.4 149,853 + EX31_RS17945 0.72 -0.2 149,853 + EX31_RS17945 0.72 -0.7 149,854 - EX31_RS17945 0.72 -0.4 149,854 - EX31_RS17945 0.72 -0.2 149,854 - EX31_RS17945 0.72 +0.6 149,854 - EX31_RS17945 0.72 -0.1 149,854 - EX31_RS17945 0.72 -0.2 149,854 - EX31_RS17945 0.72 -0.5 149,854 - EX31_RS17945 0.72 -0.2 149,854 - EX31_RS17945 0.72 +0.0 149,854 - EX31_RS17945 0.72 -0.2 149,854 - EX31_RS17945 0.72 +0.0 149,854 - EX31_RS17945 0.72 +1.2 149,854 - EX31_RS17945 0.72 +0.2 149,854 - EX31_RS17945 0.72 -0.1 149,854 - EX31_RS17945 0.72 +0.5 149,913 + EX31_RS17945 0.75 +2.4 149,914 - EX31_RS17945 0.75 -1.0 149,914 - EX31_RS17945 0.75 -0.6 149,914 - EX31_RS17945 0.75 +0.1 149,914 - EX31_RS17945 0.75 -0.5 150,003 - EX31_RS17945 0.80 +1.0 150,003 - EX31_RS17945 0.80 +0.7 150,003 - EX31_RS17945 0.80 -1.1 150,003 - EX31_RS17945 0.80 +0.8 150,003 - EX31_RS17945 0.80 -1.0 150,003 - EX31_RS17945 0.80 +0.4 150,005 + EX31_RS17945 0.80 +0.2 150,006 - EX31_RS17945 0.80 -1.7 150,006 - EX31_RS17945 0.80 +0.2 150,097 + EX31_RS17945 0.86 -1.8 150,254 + -0.1 150,279 + -0.3 150,279 + +0.2 150,355 + -0.1 150,355 + -0.7 150,355 + +0.9 150,355 + +1.0 150,355 + +0.1 150,355 + -0.0 150,355 + -0.7 150,355 + +0.9 150,356 - -0.4 150,356 - +0.2 150,356 - +1.1 150,433 + -0.1 150,433 + +0.5 150,433 + -1.8 150,434 - +0.2 150,434 - -0.5 150,434 - +0.3 150,441 + -0.2 150,441 + -0.7 150,442 - -0.3 150,442 - +0.6 150,474 + -1.3 150,475 - -0.1 150,475 - -0.2 150,475 - +0.1 150,475 - +0.6 150,562 + EX31_RS17950 0.11 -0.1 150,657 + EX31_RS17950 0.20 +0.1 150,658 - EX31_RS17950 0.20 +1.1 150,736 - EX31_RS17950 0.27 +0.2 150,736 - EX31_RS17950 0.27 +1.0 150,809 - EX31_RS17950 0.34 -0.2 150,876 - EX31_RS17950 0.40 -0.7 150,876 - EX31_RS17950 0.40 +0.3 150,979 - EX31_RS17950 0.49 -2.0 151,083 + EX31_RS17950 0.59 +0.1 151,083 + EX31_RS17950 0.59 +1.2 151,087 + EX31_RS17950 0.59 +1.6 151,088 - EX31_RS17950 0.60 +0.0 151,088 - EX31_RS17950 0.60 +0.7 151,088 - EX31_RS17950 0.60 +0.1 151,104 + EX31_RS17950 0.61 -0.3 151,104 + EX31_RS17950 0.61 +0.2 151,105 - EX31_RS17950 0.61 +0.5 151,105 - EX31_RS17950 0.61 -1.4 151,105 - EX31_RS17950 0.61 +0.7 151,105 - EX31_RS17950 0.61 -0.5 151,171 + EX31_RS17950 0.67 -0.4 151,171 + EX31_RS17950 0.67 -0.7 151,171 + EX31_RS17950 0.67 +0.6 151,172 - EX31_RS17950 0.67 +0.0 151,172 - EX31_RS17950 0.67 -1.5 151,173 + EX31_RS17950 0.67 +0.4 151,174 - EX31_RS17950 0.67 -0.7 151,271 - EX31_RS17950 0.76 -0.8 151,272 + EX31_RS17950 0.76 +0.9 151,273 - EX31_RS17950 0.76 -0.2 151,273 - EX31_RS17950 0.76 +1.0 151,273 - EX31_RS17950 0.76 -0.5 151,273 - EX31_RS17950 0.76 +1.0 151,281 + EX31_RS17950 0.77 -2.0 151,282 - EX31_RS17950 0.77 -0.7 151,282 - EX31_RS17950 0.77 -0.7 151,308 + EX31_RS17950 0.80 +0.1 151,309 - EX31_RS17950 0.80 +0.3 151,309 - EX31_RS17950 0.80 +0.4 151,329 + EX31_RS17950 0.82 +0.6 151,386 + EX31_RS17950 0.87 -0.1 151,387 - EX31_RS17950 0.87 -0.1 151,487 + +1.3 151,487 + +0.6 151,487 + +0.4 151,510 + +0.1 151,510 + -0.1 151,511 - +0.5 151,515 - -0.0 151,529 + -0.1 151,596 + +2.6 151,610 + -0.0 151,610 + -0.4 151,650 + -0.1 151,650 + +0.6 151,650 + -0.7 151,651 - -0.3 151,671 - -0.3 151,708 + -0.5 151,708 + -1.3 151,729 - +0.2 151,729 - +0.2 151,763 + +0.7 151,776 - -0.6 151,796 - -0.6 151,826 - EX31_RS17955 0.11 +0.2 152,068 - EX31_RS17955 0.38 -0.0 152,311 + EX31_RS17955 0.66 -0.5 152,312 - EX31_RS17955 0.66 +1.0 152,337 - EX31_RS17955 0.68 +0.0
Or see this region's nucleotide sequence