Strain Fitness in Rahnella sp. WP5 around EX31_RS17095

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
9,958	+		EX31_RS17090	0.36	-0.5
9,958	+		EX31_RS17090	0.36	-0.7
9,959	-		EX31_RS17090	0.36	+0.2
10,001	+		EX31_RS17090	0.39	+1.2
10,013	+		EX31_RS17090	0.40	-0.1
10,042	+		EX31_RS17090	0.43	-0.4
10,042	+		EX31_RS17090	0.43	+0.4
10,042	+		EX31_RS17090	0.43	-1.4
10,042	+		EX31_RS17090	0.43	-0.2
10,042	+		EX31_RS17090	0.43	+0.0
10,043	-		EX31_RS17090	0.43	+0.7
10,043	-		EX31_RS17090	0.43	+0.1
10,043	-		EX31_RS17090	0.43	+0.1
10,043	-		EX31_RS17090	0.43	-0.6
10,088	-		EX31_RS17090	0.46	-0.3
10,099	+		EX31_RS17090	0.47	-0.2
10,099	+		EX31_RS17090	0.47	-0.1
10,099	+		EX31_RS17090	0.47	-1.8
10,100	-		EX31_RS17090	0.47	+0.6
10,100	-		EX31_RS17090	0.47	-0.1
10,100	-		EX31_RS17090	0.47	+0.7
10,100	-		EX31_RS17090	0.47	+0.3
10,100	-		EX31_RS17090	0.47	+0.5
10,100	-		EX31_RS17090	0.47	+0.0
10,100	-		EX31_RS17090	0.47	-0.3
10,100	-		EX31_RS17090	0.47	-0.9
10,120	+		EX31_RS17090	0.49	+0.9
10,129	-		EX31_RS17090	0.50	+1.3
10,129	-		EX31_RS17090	0.50	+0.5
10,144	+		EX31_RS17090	0.51	+0.1
10,144	+		EX31_RS17090	0.51	+0.1
10,145	-		EX31_RS17090	0.51	-0.4
10,163	+		EX31_RS17090	0.52	-0.2
10,163	+		EX31_RS17090	0.52	+0.6
10,165	+		EX31_RS17090	0.53	-0.2
10,165	+		EX31_RS17090	0.53	+0.7
10,165	+		EX31_RS17090	0.53	+0.5
10,165	+		EX31_RS17090	0.53	+0.1
10,166	-		EX31_RS17090	0.53	+1.1
10,166	-		EX31_RS17090	0.53	-0.1
10,166	-		EX31_RS17090	0.53	+0.2
10,166	-		EX31_RS17090	0.53	-0.6
10,166	-		EX31_RS17090	0.53	+0.3
10,166	-		EX31_RS17090	0.53	+0.3
10,190	+		EX31_RS17090	0.55	-1.4
10,191	-		EX31_RS17090	0.55	-0.4
10,191	-		EX31_RS17090	0.55	+0.5
10,191	-		EX31_RS17090	0.55	-0.1
10,218	+		EX31_RS17090	0.57	+1.1
10,255	+		EX31_RS17090	0.60	+0.4
10,256	-		EX31_RS17090	0.60	+0.9
10,260	+		EX31_RS17090	0.60	-0.1
10,274	+		EX31_RS17090	0.61	-0.2
10,274	+		EX31_RS17090	0.61	-0.6
10,274	+		EX31_RS17090	0.61	+0.3
10,275	-		EX31_RS17090	0.61	+0.2
10,326	-		EX31_RS17090	0.65	+0.9
10,330	-		EX31_RS17090	0.66	-0.8
10,356	+		EX31_RS17090	0.68	+0.1
10,356	+		EX31_RS17090	0.68	-0.0
10,357	-		EX31_RS17090	0.68	+0.2
10,393	+		EX31_RS17090	0.71	-0.3
10,393	+		EX31_RS17090	0.71	-1.6
10,393	+		EX31_RS17090	0.71	-1.5
10,393	+		EX31_RS17090	0.71	+1.2
10,394	-		EX31_RS17090	0.71	+1.4
10,394	-		EX31_RS17090	0.71	+0.3
10,394	-		EX31_RS17090	0.71	-0.7
10,445	+		EX31_RS17090	0.75	-0.3
10,446	-		EX31_RS17090	0.75	+0.2
10,446	-		EX31_RS17090	0.75	+0.0
10,466	-		EX31_RS17090	0.77	+0.0
10,536	+		EX31_RS17090	0.82	-1.5
10,541	+		EX31_RS17090	0.83	-0.3
10,541	+		EX31_RS17090	0.83	+0.2
10,542	-		EX31_RS17090	0.83	-0.6
10,542	-		EX31_RS17090	0.83	-1.6
10,542	-		EX31_RS17090	0.83	+1.0
10,542	-		EX31_RS17090	0.83	+0.5
10,604	+		EX31_RS17090	0.88	-1.2
10,604	+		EX31_RS17090	0.88	+0.0
10,605	-		EX31_RS17090	0.88	+0.8
10,613	+		EX31_RS17090	0.88	-0.0
10,613	+		EX31_RS17090	0.88	-0.9
10,613	+		EX31_RS17090	0.88	-0.6
10,613	+		EX31_RS17090	0.88	-0.3
10,613	+		EX31_RS17090	0.88	-0.4
10,614	-		EX31_RS17090	0.89	-0.5
10,614	-		EX31_RS17090	0.89	+0.7
10,614	-		EX31_RS17090	0.89	-0.1
10,614	-		EX31_RS17090	0.89	-0.7
10,615	+		EX31_RS17090	0.89	-2.1
10,615	+		EX31_RS17090	0.89	+0.2
10,615	+		EX31_RS17090	0.89	-0.1
10,633	+				+0.4
10,634	-				+0.1
10,634	-				+0.2
10,634	-				+0.9
10,668	+				-2.9
10,740	+				+0.1
10,741	-				+1.5
10,788	+				+0.3
10,788	+				+0.0
10,788	+				-0.5
10,788	+				-0.2
10,788	+				+1.3
10,788	+				-0.9
10,789	-				-0.2
10,789	-				-0.1
10,792	+				+0.5
10,792	+				+0.9
10,792	+				-0.4
10,830	+				-0.2
10,858	+				-0.4
10,858	+				+0.5
10,858	+				+0.3
10,858	+				-0.4
10,858	+				+0.6
10,858	+				-0.2
10,859	-				-0.1
10,862	+				-0.1
10,862	+				-0.1
10,862	+				-0.6
10,863	-				+0.7
10,863	-				-0.3
10,863	-				-0.2
10,878	+				-0.1
10,878	+				-0.0
10,912	-				-1.2
10,912	-				-0.2
10,912	-				+0.3
10,923	+				-1.2
10,950	-				-1.0
10,950	-				-0.2
10,971	+				-0.1
11,040	+				-0.1
11,259	+		EX31_RS17095	0.24	-0.1
11,364	+		EX31_RS17095	0.32	-0.1
11,364	+		EX31_RS17095	0.32	+1.0
11,365	-		EX31_RS17095	0.32	-1.7
11,365	-		EX31_RS17095	0.32	+0.2
11,499	+		EX31_RS17095	0.43	+0.8
11,588	+		EX31_RS17095	0.50	+0.4
11,696	+		EX31_RS17095	0.58	+0.1
11,696	+		EX31_RS17095	0.58	+1.6
11,696	+		EX31_RS17095	0.58	+2.6
11,696	+		EX31_RS17095	0.58	-0.5
11,697	-		EX31_RS17095	0.58	-0.7
11,697	-		EX31_RS17095	0.58	-0.2
11,697	-		EX31_RS17095	0.58	-0.6
11,697	-		EX31_RS17095	0.58	+0.7
11,697	-		EX31_RS17095	0.58	-0.4
11,697	-		EX31_RS17095	0.58	-0.2
11,780	+		EX31_RS17095	0.65	-0.4
11,780	+		EX31_RS17095	0.65	-0.4
11,780	+		EX31_RS17095	0.65	-2.1
11,780	+		EX31_RS17095	0.65	+0.2
11,780	+		EX31_RS17095	0.65	+0.7
11,781	-		EX31_RS17095	0.65	+0.6
11,781	-		EX31_RS17095	0.65	-0.3
11,821	+		EX31_RS17095	0.68	-0.7
11,821	+		EX31_RS17095	0.68	+0.1
11,867	+		EX31_RS17095	0.72	+0.3
11,867	+		EX31_RS17095	0.72	+0.0
11,867	+		EX31_RS17095	0.72	+0.3
11,867	+		EX31_RS17095	0.72	+0.0
11,867	+		EX31_RS17095	0.72	+0.1
11,868	-		EX31_RS17095	0.72	-0.5
11,868	-		EX31_RS17095	0.72	+0.5
11,881	+		EX31_RS17095	0.73	-0.6
11,904	+		EX31_RS17095	0.75	-0.1
11,905	-		EX31_RS17095	0.75	+0.1
11,905	-		EX31_RS17095	0.75	+0.0
11,922	-		EX31_RS17095	0.76	+0.3
12,000	+		EX31_RS17095	0.82	+0.2
12,001	-		EX31_RS17095	0.82	+1.3
12,001	-		EX31_RS17095	0.82	+0.7
12,108	+				+0.3
12,134	-				-0.4
12,134	-				-0.2
12,134	-				-1.6
12,149	-				+0.4
12,174	+				-0.3
12,198	-				-0.6
12,257	+				+0.5
12,257	+				+0.3
12,257	+				+0.8
12,257	+				-0.7
12,257	+				+0.3
12,257	+				+0.2
12,257	+				-0.0
12,258	-				+0.3
12,258	-				+0.6
12,258	-				-0.2
12,258	-				+0.5
12,258	-				+0.4
12,258	-				+0.6
12,259	+				-0.7
12,259	+				+1.2
12,260	-				-0.1
12,266	+				-2.4
12,301	+				+1.5
12,301	+				-0.6
12,302	-				+0.7
12,302	-				+2.0
12,315	-				+0.5
12,347	+				+0.1
12,347	+				+1.0
12,347	+				-1.1
12,347	+				+0.2
12,348	-				-1.2
12,348	-				+0.5
12,353	+				-1.3
12,353	+				+0.6
12,371	+				-0.3
12,371	+				+0.1
12,372	-				-1.4
12,417	-				-0.5
12,432	+				+0.1
12,433	-				+0.6
12,433	-				-0.9
12,473	-				-0.7
12,483	+				+0.2
12,483	+				+0.5
12,535	+				-1.6
12,535	+				-0.5
12,535	+				-0.0
12,535	+				-0.7
12,535	+				+0.1
12,536	-				+0.8
12,536	-				-1.0
12,536	-				-0.9
12,536	-				-0.2
12,536	-				+0.5
12,536	-				-0.9
12,537	+				-0.1
12,537	+				-0.6
12,537	+				+0.1
12,537	+				+1.0
12,537	+				+0.2
12,538	-				-0.1
12,538	-				-0.4
12,538	-				+0.0
12,538	-				+1.9
12,538	-				+0.1
12,538	-				-1.3
12,538	-				+0.0
12,578	-				-0.7
12,604	+				+0.7
12,651	+				-0.1
12,681	+				+0.1
12,681	+				-1.0
12,737	+		EX31_RS17100	0.17	+0.4
12,738	-		EX31_RS17100	0.17	-1.8
12,775	-		EX31_RS17100	0.24	+0.3
12,913	-		EX31_RS17100	0.49	-1.0
12,985	+		EX31_RS17100	0.62	-0.3
13,018	-		EX31_RS17100	0.68	-0.6
13,096	-		EX31_RS17100	0.82	-1.1
13,100	+		EX31_RS17100	0.83	-0.4