Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10990 and EX31_RS10995 are separated by 145 nucleotides EX31_RS10995 and EX31_RS11000 are separated by 84 nucleotides EX31_RS11000 and EX31_RS11005 are separated by 528 nucleotides
EX31_RS10990: EX31_RS10990 - LysR family transcriptional regulator, at 126,671 to 127,567
_RS10990
EX31_RS10995: EX31_RS10995 - phenolic acid decarboxylase, at 127,713 to 128,219
_RS10995
EX31_RS11000: EX31_RS11000 - alpha/beta hydrolase, at 128,304 to 129,317
_RS11000
EX31_RS11005: EX31_RS11005 - EAL domain-containing protein, at 129,846 to 131,369
_RS11005
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1 at 127.437 kb on - strand, within EX31_RS10990 at 127.437 kb on - strand, within EX31_RS10990 at 127.453 kb on - strand, within EX31_RS10990 at 127.526 kb on + strand at 127.526 kb on + strand at 127.527 kb on - strand at 127.527 kb on - strand at 127.582 kb on + strand at 127.583 kb on - strand at 127.583 kb on - strand at 127.583 kb on - strand at 127.655 kb on - strand at 127.710 kb on - strand at 127.710 kb on - strand at 127.710 kb on - strand at 127.710 kb on - strand at 127.710 kb on - strand at 127.767 kb on + strand, within EX31_RS10995 at 127.767 kb on + strand, within EX31_RS10995 at 127.767 kb on + strand, within EX31_RS10995 at 127.768 kb on - strand, within EX31_RS10995 at 127.768 kb on - strand, within EX31_RS10995 at 127.768 kb on - strand, within EX31_RS10995 at 127.792 kb on - strand, within EX31_RS10995 at 127.800 kb on + strand, within EX31_RS10995 at 127.801 kb on - strand, within EX31_RS10995 at 127.801 kb on - strand, within EX31_RS10995 at 127.881 kb on + strand, within EX31_RS10995 at 127.881 kb on + strand, within EX31_RS10995 at 127.882 kb on - strand, within EX31_RS10995 at 127.882 kb on - strand, within EX31_RS10995 at 127.882 kb on - strand, within EX31_RS10995 at 127.882 kb on - strand, within EX31_RS10995 at 127.882 kb on - strand, within EX31_RS10995 at 127.882 kb on - strand, within EX31_RS10995 at 127.884 kb on - strand, within EX31_RS10995 at 128.051 kb on + strand, within EX31_RS10995 at 128.051 kb on + strand, within EX31_RS10995 at 128.052 kb on - strand, within EX31_RS10995 at 128.126 kb on + strand, within EX31_RS10995 at 128.195 kb on + strand at 128.237 kb on + strand at 128.238 kb on - strand at 128.382 kb on - strand at 128.409 kb on - strand, within EX31_RS11000 at 128.409 kb on - strand, within EX31_RS11000 at 128.440 kb on + strand, within EX31_RS11000 at 128.441 kb on - strand, within EX31_RS11000 at 128.441 kb on - strand, within EX31_RS11000 at 128.461 kb on - strand, within EX31_RS11000 at 128.461 kb on - strand, within EX31_RS11000 at 128.529 kb on + strand, within EX31_RS11000 at 128.552 kb on - strand, within EX31_RS11000 at 128.581 kb on + strand, within EX31_RS11000 at 128.581 kb on + strand, within EX31_RS11000 at 128.581 kb on + strand, within EX31_RS11000 at 128.581 kb on + strand, within EX31_RS11000 at 128.582 kb on - strand, within EX31_RS11000 at 128.582 kb on - strand, within EX31_RS11000 at 128.582 kb on - strand, within EX31_RS11000 at 128.582 kb on - strand, within EX31_RS11000 at 128.584 kb on - strand, within EX31_RS11000 at 128.679 kb on - strand, within EX31_RS11000 at 128.679 kb on - strand, within EX31_RS11000 at 128.687 kb on - strand, within EX31_RS11000 at 128.687 kb on - strand, within EX31_RS11000 at 128.687 kb on - strand, within EX31_RS11000 at 128.689 kb on + strand, within EX31_RS11000 at 128.690 kb on - strand, within EX31_RS11000 at 128.704 kb on + strand, within EX31_RS11000 at 128.705 kb on - strand, within EX31_RS11000 at 128.747 kb on - strand, within EX31_RS11000 at 128.768 kb on - strand, within EX31_RS11000 at 128.781 kb on - strand, within EX31_RS11000 at 128.842 kb on + strand, within EX31_RS11000 at 128.842 kb on + strand, within EX31_RS11000 at 128.842 kb on + strand, within EX31_RS11000 at 128.842 kb on + strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.843 kb on - strand, within EX31_RS11000 at 128.871 kb on - strand, within EX31_RS11000 at 128.907 kb on - strand, within EX31_RS11000 at 128.921 kb on + strand, within EX31_RS11000 at 128.963 kb on - strand, within EX31_RS11000 at 129.051 kb on - strand, within EX31_RS11000 at 129.116 kb on + strand, within EX31_RS11000 at 129.116 kb on + strand, within EX31_RS11000 at 129.117 kb on - strand, within EX31_RS11000 at 129.143 kb on - strand, within EX31_RS11000 at 129.276 kb on + strand at 129.277 kb on - strand at 129.302 kb on + strand at 129.363 kb on - strand at 129.443 kb on - strand at 129.454 kb on + strand at 129.454 kb on + strand at 129.454 kb on + strand at 129.481 kb on + strand at 129.530 kb on - strand at 129.530 kb on - strand at 129.588 kb on + strand at 129.591 kb on + strand at 129.591 kb on + strand at 129.592 kb on - strand at 129.592 kb on - strand at 129.603 kb on - strand at 129.620 kb on - strand at 129.631 kb on + strand at 129.631 kb on + strand at 129.631 kb on + strand at 129.631 kb on + strand at 129.631 kb on + strand at 129.632 kb on - strand at 129.634 kb on - strand at 129.675 kb on + strand at 129.677 kb on + strand at 129.677 kb on + strand at 129.678 kb on - strand at 129.678 kb on - strand at 129.710 kb on + strand at 129.790 kb on - strand at 129.790 kb on - strand at 129.798 kb on + strand at 129.798 kb on + strand at 129.798 kb on + strand at 129.798 kb on + strand at 129.798 kb on + strand at 129.799 kb on - strand at 129.799 kb on - strand at 129.799 kb on - strand at 129.799 kb on - strand at 129.799 kb on - strand at 129.799 kb on - strand at 129.799 kb on - strand at 129.841 kb on + strand at 129.895 kb on + strand at 129.962 kb on - strand at 130.162 kb on - strand, within EX31_RS11005 at 130.174 kb on + strand, within EX31_RS11005 at 130.196 kb on + strand, within EX31_RS11005 at 130.197 kb on - strand, within EX31_RS11005 at 130.197 kb on - strand, within EX31_RS11005 at 130.197 kb on - strand, within EX31_RS11005 at 130.212 kb on + strand, within EX31_RS11005 at 130.213 kb on - strand, within EX31_RS11005 at 130.213 kb on - strand, within EX31_RS11005 at 130.215 kb on - strand, within EX31_RS11005
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 127,437 - EX31_RS10990 0.85 -0.0 127,437 - EX31_RS10990 0.85 +1.7 127,453 - EX31_RS10990 0.87 +0.3 127,526 + -0.2 127,526 + +0.2 127,527 - -0.1 127,527 - +0.6 127,582 + +0.1 127,583 - +0.4 127,583 - +0.7 127,583 - +1.2 127,655 - +0.1 127,710 - +0.4 127,710 - +0.0 127,710 - -0.7 127,710 - -0.3 127,710 - -0.5 127,767 + EX31_RS10995 0.11 +0.1 127,767 + EX31_RS10995 0.11 +0.5 127,767 + EX31_RS10995 0.11 +0.3 127,768 - EX31_RS10995 0.11 +1.0 127,768 - EX31_RS10995 0.11 +1.1 127,768 - EX31_RS10995 0.11 -0.2 127,792 - EX31_RS10995 0.16 -0.4 127,800 + EX31_RS10995 0.17 -0.3 127,801 - EX31_RS10995 0.17 +1.5 127,801 - EX31_RS10995 0.17 -1.3 127,881 + EX31_RS10995 0.33 -0.0 127,881 + EX31_RS10995 0.33 +0.0 127,882 - EX31_RS10995 0.33 +0.2 127,882 - EX31_RS10995 0.33 +0.2 127,882 - EX31_RS10995 0.33 -0.1 127,882 - EX31_RS10995 0.33 +0.1 127,882 - EX31_RS10995 0.33 -0.9 127,882 - EX31_RS10995 0.33 -0.1 127,884 - EX31_RS10995 0.34 -0.6 128,051 + EX31_RS10995 0.67 -0.6 128,051 + EX31_RS10995 0.67 -0.5 128,052 - EX31_RS10995 0.67 +1.3 128,126 + EX31_RS10995 0.81 -0.0 128,195 + +0.4 128,237 + -1.3 128,238 - +0.0 128,382 - +0.1 128,409 - EX31_RS11000 0.10 -0.7 128,409 - EX31_RS11000 0.10 +0.2 128,440 + EX31_RS11000 0.13 -0.1 128,441 - EX31_RS11000 0.14 -0.2 128,441 - EX31_RS11000 0.14 +0.3 128,461 - EX31_RS11000 0.15 +0.4 128,461 - EX31_RS11000 0.15 +1.5 128,529 + EX31_RS11000 0.22 -1.7 128,552 - EX31_RS11000 0.24 +0.9 128,581 + EX31_RS11000 0.27 +0.9 128,581 + EX31_RS11000 0.27 +1.4 128,581 + EX31_RS11000 0.27 +1.2 128,581 + EX31_RS11000 0.27 -0.9 128,582 - EX31_RS11000 0.27 +0.4 128,582 - EX31_RS11000 0.27 +0.3 128,582 - EX31_RS11000 0.27 +0.3 128,582 - EX31_RS11000 0.27 -0.2 128,584 - EX31_RS11000 0.28 +0.2 128,679 - EX31_RS11000 0.37 +0.1 128,679 - EX31_RS11000 0.37 -0.4 128,687 - EX31_RS11000 0.38 +0.5 128,687 - EX31_RS11000 0.38 -0.0 128,687 - EX31_RS11000 0.38 +0.1 128,689 + EX31_RS11000 0.38 -0.5 128,690 - EX31_RS11000 0.38 -0.8 128,704 + EX31_RS11000 0.39 -0.6 128,705 - EX31_RS11000 0.40 +1.0 128,747 - EX31_RS11000 0.44 -0.1 128,768 - EX31_RS11000 0.46 +0.6 128,781 - EX31_RS11000 0.47 +1.1 128,842 + EX31_RS11000 0.53 +0.3 128,842 + EX31_RS11000 0.53 -1.4 128,842 + EX31_RS11000 0.53 +0.2 128,842 + EX31_RS11000 0.53 +0.1 128,843 - EX31_RS11000 0.53 -0.2 128,843 - EX31_RS11000 0.53 -1.1 128,843 - EX31_RS11000 0.53 +0.0 128,843 - EX31_RS11000 0.53 -0.6 128,843 - EX31_RS11000 0.53 +0.6 128,843 - EX31_RS11000 0.53 +0.5 128,843 - EX31_RS11000 0.53 -0.2 128,843 - EX31_RS11000 0.53 +0.2 128,843 - EX31_RS11000 0.53 +1.0 128,871 - EX31_RS11000 0.56 +1.0 128,907 - EX31_RS11000 0.59 +1.1 128,921 + EX31_RS11000 0.61 +0.7 128,963 - EX31_RS11000 0.65 +0.8 129,051 - EX31_RS11000 0.74 -0.6 129,116 + EX31_RS11000 0.80 +0.6 129,116 + EX31_RS11000 0.80 +0.2 129,117 - EX31_RS11000 0.80 -0.7 129,143 - EX31_RS11000 0.83 +0.6 129,276 + +0.1 129,277 - +0.0 129,302 + +0.6 129,363 - -0.6 129,443 - -0.5 129,454 + +1.0 129,454 + +0.4 129,454 + -0.6 129,481 + +1.1 129,530 - -0.5 129,530 - +0.0 129,588 + -0.7 129,591 + +0.0 129,591 + -1.4 129,592 - -0.0 129,592 - -0.3 129,603 - -2.4 129,620 - -1.3 129,631 + +0.3 129,631 + +0.1 129,631 + -0.0 129,631 + -0.0 129,631 + +0.7 129,632 - +0.8 129,634 - +0.1 129,675 + -0.9 129,677 + +0.2 129,677 + +0.1 129,678 - +0.4 129,678 - +0.1 129,710 + -0.1 129,790 - +1.2 129,790 - +0.9 129,798 + -1.4 129,798 + -0.0 129,798 + +0.5 129,798 + +0.5 129,798 + +0.9 129,799 - -1.2 129,799 - -0.6 129,799 - -0.4 129,799 - +0.6 129,799 - +0.9 129,799 - -0.4 129,799 - +0.1 129,841 + -0.2 129,895 + +0.6 129,962 - -0.5 130,162 - EX31_RS11005 0.21 -0.1 130,174 + EX31_RS11005 0.22 -1.1 130,196 + EX31_RS11005 0.23 -0.6 130,197 - EX31_RS11005 0.23 +0.4 130,197 - EX31_RS11005 0.23 +0.4 130,197 - EX31_RS11005 0.23 -0.5 130,212 + EX31_RS11005 0.24 -1.1 130,213 - EX31_RS11005 0.24 -0.6 130,213 - EX31_RS11005 0.24 -0.5 130,215 - EX31_RS11005 0.24 -0.5
Or see this region's nucleotide sequence