Strain Fitness in Rahnella sp. WP5 around EX31_RS07220

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07215 and EX31_RS07220 are separated by 535 nucleotidesEX31_RS07220 and EX31_RS07225 are separated by 230 nucleotides EX31_RS07215: EX31_RS07215 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 240,945 to 242,474 _RS07215 EX31_RS07220: EX31_RS07220 - DUF1471 domain-containing protein, at 243,010 to 243,963 _RS07220 EX31_RS07225: EX31_RS07225 - membrane dipeptidase, at 244,194 to 245,306 _RS07225 Position (kb) 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 242.115 kb on - strand, within EX31_RS07215at 242.274 kb on - strand, within EX31_RS07215at 242.286 kb on + strand, within EX31_RS07215at 242.287 kb on - strand, within EX31_RS07215at 242.287 kb on - strand, within EX31_RS07215at 242.461 kb on - strandat 242.469 kb on - strandat 242.474 kb on + strandat 242.475 kb on - strandat 242.475 kb on - strandat 242.478 kb on - strandat 242.478 kb on - strandat 242.478 kb on - strandat 242.478 kb on - strandat 242.531 kb on + strandat 242.612 kb on - strandat 242.635 kb on - strandat 242.642 kb on - strandat 242.698 kb on + strandat 242.711 kb on - strandat 242.750 kb on - strandat 242.755 kb on - strandat 242.795 kb on + strandat 242.800 kb on - strandat 242.823 kb on + strandat 242.836 kb on + strandat 242.839 kb on - strandat 242.841 kb on - strandat 242.841 kb on - strandat 242.841 kb on - strandat 242.841 kb on - strandat 242.841 kb on - strandat 242.845 kb on + strandat 242.857 kb on + strandat 242.874 kb on - strandat 242.925 kb on + strandat 242.925 kb on + strandat 242.926 kb on - strandat 242.926 kb on - strandat 242.926 kb on - strandat 242.984 kb on + strandat 242.984 kb on + strandat 242.984 kb on + strandat 242.984 kb on + strandat 243.135 kb on + strand, within EX31_RS07220at 243.136 kb on - strand, within EX31_RS07220at 243.138 kb on + strand, within EX31_RS07220at 243.212 kb on - strand, within EX31_RS07220at 243.241 kb on - strand, within EX31_RS07220at 243.263 kb on + strand, within EX31_RS07220at 243.277 kb on + strand, within EX31_RS07220at 243.277 kb on + strand, within EX31_RS07220at 243.277 kb on + strand, within EX31_RS07220at 243.349 kb on - strand, within EX31_RS07220at 243.435 kb on + strand, within EX31_RS07220at 243.463 kb on + strand, within EX31_RS07220at 243.514 kb on + strand, within EX31_RS07220at 243.514 kb on + strand, within EX31_RS07220at 243.532 kb on + strand, within EX31_RS07220at 243.532 kb on + strand, within EX31_RS07220at 243.534 kb on + strand, within EX31_RS07220at 243.534 kb on + strand, within EX31_RS07220at 243.773 kb on + strand, within EX31_RS07220at 243.776 kb on + strand, within EX31_RS07220at 243.776 kb on + strand, within EX31_RS07220at 243.776 kb on + strand, within EX31_RS07220at 243.892 kb on + strandat 243.892 kb on + strandat 243.941 kb on + strandat 243.961 kb on + strandat 243.961 kb on + strandat 244.145 kb on + strandat 244.208 kb on + strandat 244.410 kb on + strand, within EX31_RS07225at 244.410 kb on + strand, within EX31_RS07225at 244.411 kb on - strand, within EX31_RS07225at 244.411 kb on - strand, within EX31_RS07225at 244.415 kb on + strand, within EX31_RS07225at 244.536 kb on - strand, within EX31_RS07225at 244.536 kb on - strand, within EX31_RS07225at 244.553 kb on + strand, within EX31_RS07225at 244.554 kb on - strand, within EX31_RS07225at 244.804 kb on + strand, within EX31_RS07225at 244.805 kb on - strand, within EX31_RS07225at 244.805 kb on - strand, within EX31_RS07225at 244.856 kb on + strand, within EX31_RS07225at 244.873 kb on - strand, within EX31_RS07225at 244.883 kb on + strand, within EX31_RS07225

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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242,115 - EX31_RS07215 0.76 -0.3
242,274 - EX31_RS07215 0.87 +0.3
242,286 + EX31_RS07215 0.88 -0.9
242,287 - EX31_RS07215 0.88 +0.8
242,287 - EX31_RS07215 0.88 -0.7
242,461 - +0.4
242,469 - +2.1
242,474 + +0.2
242,475 - -0.4
242,475 - +0.7
242,478 - -1.2
242,478 - -2.3
242,478 - -0.3
242,478 - +0.2
242,531 + -0.5
242,612 - +0.4
242,635 - +0.3
242,642 - +0.4
242,698 + -0.7
242,711 - +0.8
242,750 - -0.3
242,755 - +1.0
242,795 + +0.8
242,800 - -0.6
242,823 + +0.2
242,836 + +0.2
242,839 - -0.7
242,841 - +0.2
242,841 - -0.7
242,841 - +0.8
242,841 - -0.9
242,841 - -0.2
242,845 + +0.4
242,857 + -0.7
242,874 - -0.9
242,925 + -0.7
242,925 + +0.3
242,926 - -0.7
242,926 - -0.9
242,926 - +0.3
242,984 + +0.3
242,984 + -0.0
242,984 + +1.5
242,984 + -0.0
243,135 + EX31_RS07220 0.13 +1.6
243,136 - EX31_RS07220 0.13 -0.5
243,138 + EX31_RS07220 0.13 +0.3
243,212 - EX31_RS07220 0.21 +0.3
243,241 - EX31_RS07220 0.24 -1.3
243,263 + EX31_RS07220 0.27 -0.3
243,277 + EX31_RS07220 0.28 +0.3
243,277 + EX31_RS07220 0.28 +1.2
243,277 + EX31_RS07220 0.28 -0.7
243,349 - EX31_RS07220 0.36 +1.3
243,435 + EX31_RS07220 0.45 +1.5
243,463 + EX31_RS07220 0.47 +0.2
243,514 + EX31_RS07220 0.53 -0.1
243,514 + EX31_RS07220 0.53 -0.6
243,532 + EX31_RS07220 0.55 +2.3
243,532 + EX31_RS07220 0.55 -0.6
243,534 + EX31_RS07220 0.55 +0.4
243,534 + EX31_RS07220 0.55 +0.7
243,773 + EX31_RS07220 0.80 -0.1
243,776 + EX31_RS07220 0.80 -1.1
243,776 + EX31_RS07220 0.80 +0.8
243,776 + EX31_RS07220 0.80 +0.7
243,892 + +0.4
243,892 + +0.1
243,941 + +0.1
243,961 + +0.7
243,961 + -0.3
244,145 + -0.5
244,208 + +0.4
244,410 + EX31_RS07225 0.19 -0.2
244,410 + EX31_RS07225 0.19 -0.9
244,411 - EX31_RS07225 0.19 -0.1
244,411 - EX31_RS07225 0.19 +0.1
244,415 + EX31_RS07225 0.20 +0.8
244,536 - EX31_RS07225 0.31 +1.6
244,536 - EX31_RS07225 0.31 +0.3
244,553 + EX31_RS07225 0.32 -1.2
244,554 - EX31_RS07225 0.32 +1.3
244,804 + EX31_RS07225 0.55 +0.7
244,805 - EX31_RS07225 0.55 +0.4
244,805 - EX31_RS07225 0.55 -0.0
244,856 + EX31_RS07225 0.59 -0.1
244,873 - EX31_RS07225 0.61 +0.9
244,883 + EX31_RS07225 0.62 -1.9

Or see this region's nucleotide sequence