Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04760 and EX31_RS04765 are separated by 114 nucleotides EX31_RS04765 and EX31_RS04770 are separated by 24 nucleotides EX31_RS04770 and EX31_RS04775 are separated by 58 nucleotides
EX31_RS04760: EX31_RS04760 - intracellular growth attenuator family protein, at 69,452 to 71,584
_RS04760
EX31_RS04765: EX31_RS04765 - GMP/IMP nucleotidase, at 71,699 to 72,388
_RS04765
EX31_RS04770: EX31_RS04770 - ribosome-associated heat shock protein Hsp15, at 72,413 to 72,817
_RS04770
EX31_RS04775: EX31_RS04775 - Hsp33 family molecular chaperone HslO, at 72,876 to 73,760
_RS04775
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 71.530 kb on + strand at 71.530 kb on + strand at 71.530 kb on + strand at 71.530 kb on + strand at 71.531 kb on - strand at 71.531 kb on - strand at 71.553 kb on + strand at 71.553 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.620 kb on + strand at 71.621 kb on - strand at 71.621 kb on - strand at 71.621 kb on - strand at 71.621 kb on - strand at 71.857 kb on - strand, within EX31_RS04765 at 71.857 kb on - strand, within EX31_RS04765 at 71.870 kb on + strand, within EX31_RS04765 at 71.870 kb on + strand, within EX31_RS04765 at 71.901 kb on - strand, within EX31_RS04765 at 71.912 kb on + strand, within EX31_RS04765 at 71.938 kb on + strand, within EX31_RS04765 at 71.938 kb on + strand, within EX31_RS04765 at 71.942 kb on + strand, within EX31_RS04765 at 71.942 kb on + strand, within EX31_RS04765 at 71.942 kb on + strand, within EX31_RS04765 at 72.085 kb on + strand, within EX31_RS04765 at 72.086 kb on - strand, within EX31_RS04765 at 72.093 kb on + strand, within EX31_RS04765 at 72.111 kb on + strand, within EX31_RS04765 at 72.112 kb on - strand, within EX31_RS04765 at 72.114 kb on + strand, within EX31_RS04765 at 72.114 kb on + strand, within EX31_RS04765 at 72.115 kb on - strand, within EX31_RS04765 at 72.191 kb on - strand, within EX31_RS04765 at 72.207 kb on + strand, within EX31_RS04765 at 72.207 kb on + strand, within EX31_RS04765 at 72.207 kb on + strand, within EX31_RS04765 at 72.207 kb on + strand, within EX31_RS04765 at 72.207 kb on + strand, within EX31_RS04765 at 72.208 kb on - strand, within EX31_RS04765 at 72.208 kb on - strand, within EX31_RS04765 at 72.208 kb on - strand, within EX31_RS04765 at 72.208 kb on - strand, within EX31_RS04765 at 72.263 kb on + strand, within EX31_RS04765 at 72.275 kb on - strand, within EX31_RS04765 at 72.277 kb on - strand, within EX31_RS04765 at 72.279 kb on - strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.304 kb on + strand, within EX31_RS04765 at 72.305 kb on - strand, within EX31_RS04765 at 72.305 kb on - strand, within EX31_RS04765 at 72.305 kb on - strand, within EX31_RS04765 at 72.305 kb on - strand, within EX31_RS04765 at 72.305 kb on - strand, within EX31_RS04765 at 72.339 kb on - strand at 72.339 kb on - strand at 72.369 kb on + strand at 72.369 kb on + strand at 72.382 kb on + strand at 72.386 kb on + strand at 72.412 kb on + strand at 72.412 kb on + strand at 72.413 kb on - strand at 72.413 kb on - strand at 72.413 kb on - strand at 72.413 kb on - strand at 72.482 kb on + strand, within EX31_RS04770 at 72.533 kb on + strand, within EX31_RS04770 at 72.533 kb on + strand, within EX31_RS04770 at 72.533 kb on + strand, within EX31_RS04770 at 72.533 kb on + strand, within EX31_RS04770 at 72.533 kb on + strand, within EX31_RS04770 at 72.533 kb on + strand, within EX31_RS04770 at 72.534 kb on - strand, within EX31_RS04770 at 72.534 kb on - strand, within EX31_RS04770 at 72.534 kb on - strand, within EX31_RS04770 at 72.534 kb on - strand, within EX31_RS04770 at 72.534 kb on - strand, within EX31_RS04770 at 72.534 kb on - strand, within EX31_RS04770 at 72.534 kb on - strand, within EX31_RS04770 at 72.586 kb on + strand, within EX31_RS04770 at 72.586 kb on + strand, within EX31_RS04770 at 72.586 kb on + strand, within EX31_RS04770 at 72.587 kb on - strand, within EX31_RS04770 at 72.587 kb on - strand, within EX31_RS04770 at 72.649 kb on + strand, within EX31_RS04770 at 72.650 kb on - strand, within EX31_RS04770 at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.800 kb on + strand at 72.815 kb on + strand at 72.816 kb on - strand at 72.860 kb on - strand at 72.903 kb on + strand at 72.903 kb on + strand at 72.903 kb on + strand at 72.903 kb on + strand at 72.903 kb on + strand at 72.904 kb on - strand at 72.904 kb on - strand at 72.969 kb on - strand, within EX31_RS04775 at 72.969 kb on - strand, within EX31_RS04775 at 73.067 kb on + strand, within EX31_RS04775 at 73.068 kb on - strand, within EX31_RS04775 at 73.070 kb on + strand, within EX31_RS04775 at 73.071 kb on - strand, within EX31_RS04775 at 73.071 kb on - strand, within EX31_RS04775 at 73.209 kb on + strand, within EX31_RS04775 at 73.302 kb on + strand, within EX31_RS04775 at 73.302 kb on + strand, within EX31_RS04775 at 73.303 kb on - strand, within EX31_RS04775 at 73.303 kb on - strand, within EX31_RS04775
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 71,530 + -0.2 71,530 + +1.6 71,530 + -0.6 71,530 + -0.1 71,531 - -0.3 71,531 - +0.5 71,553 + +0.2 71,553 + -0.3 71,620 + +0.8 71,620 + -0.5 71,620 + -0.8 71,620 + +0.6 71,620 + +0.1 71,620 + -0.2 71,620 + -1.2 71,620 + -0.2 71,620 + +0.5 71,621 - +0.2 71,621 - +0.0 71,621 - -0.9 71,621 - +0.1 71,857 - EX31_RS04765 0.23 -2.3 71,857 - EX31_RS04765 0.23 -0.2 71,870 + EX31_RS04765 0.25 -0.8 71,870 + EX31_RS04765 0.25 +0.0 71,901 - EX31_RS04765 0.29 -0.2 71,912 + EX31_RS04765 0.31 -0.1 71,938 + EX31_RS04765 0.35 +0.5 71,938 + EX31_RS04765 0.35 -0.5 71,942 + EX31_RS04765 0.35 +0.1 71,942 + EX31_RS04765 0.35 -0.6 71,942 + EX31_RS04765 0.35 -1.3 72,085 + EX31_RS04765 0.56 +0.0 72,086 - EX31_RS04765 0.56 +0.1 72,093 + EX31_RS04765 0.57 +0.4 72,111 + EX31_RS04765 0.60 +0.1 72,112 - EX31_RS04765 0.60 +0.5 72,114 + EX31_RS04765 0.60 -0.1 72,114 + EX31_RS04765 0.60 +0.2 72,115 - EX31_RS04765 0.60 +0.4 72,191 - EX31_RS04765 0.71 -0.5 72,207 + EX31_RS04765 0.74 -0.1 72,207 + EX31_RS04765 0.74 +0.3 72,207 + EX31_RS04765 0.74 -0.0 72,207 + EX31_RS04765 0.74 -0.3 72,207 + EX31_RS04765 0.74 +0.1 72,208 - EX31_RS04765 0.74 -1.0 72,208 - EX31_RS04765 0.74 +0.7 72,208 - EX31_RS04765 0.74 -0.8 72,208 - EX31_RS04765 0.74 -0.5 72,263 + EX31_RS04765 0.82 -0.2 72,275 - EX31_RS04765 0.83 +0.1 72,277 - EX31_RS04765 0.84 -0.2 72,279 - EX31_RS04765 0.84 -1.2 72,304 + EX31_RS04765 0.88 -0.3 72,304 + EX31_RS04765 0.88 -0.9 72,304 + EX31_RS04765 0.88 +0.1 72,304 + EX31_RS04765 0.88 +0.2 72,304 + EX31_RS04765 0.88 +0.6 72,304 + EX31_RS04765 0.88 -0.6 72,304 + EX31_RS04765 0.88 -0.2 72,304 + EX31_RS04765 0.88 -0.5 72,304 + EX31_RS04765 0.88 -0.0 72,304 + EX31_RS04765 0.88 -0.0 72,304 + EX31_RS04765 0.88 +0.2 72,305 - EX31_RS04765 0.88 -0.1 72,305 - EX31_RS04765 0.88 -0.4 72,305 - EX31_RS04765 0.88 -1.0 72,305 - EX31_RS04765 0.88 -0.1 72,305 - EX31_RS04765 0.88 -0.8 72,339 - -1.0 72,339 - +0.1 72,369 + -1.1 72,369 + -0.4 72,382 + +0.1 72,386 + -0.2 72,412 + -0.2 72,412 + +0.4 72,413 - +0.6 72,413 - -1.4 72,413 - -0.3 72,413 - +0.7 72,482 + EX31_RS04770 0.17 -0.0 72,533 + EX31_RS04770 0.30 -0.2 72,533 + EX31_RS04770 0.30 -0.6 72,533 + EX31_RS04770 0.30 +0.0 72,533 + EX31_RS04770 0.30 +1.0 72,533 + EX31_RS04770 0.30 -0.6 72,533 + EX31_RS04770 0.30 -0.1 72,534 - EX31_RS04770 0.30 -0.2 72,534 - EX31_RS04770 0.30 -1.4 72,534 - EX31_RS04770 0.30 -0.3 72,534 - EX31_RS04770 0.30 -1.0 72,534 - EX31_RS04770 0.30 -0.1 72,534 - EX31_RS04770 0.30 -0.5 72,534 - EX31_RS04770 0.30 +0.8 72,586 + EX31_RS04770 0.43 +0.5 72,586 + EX31_RS04770 0.43 -0.1 72,586 + EX31_RS04770 0.43 -0.0 72,587 - EX31_RS04770 0.43 +0.0 72,587 - EX31_RS04770 0.43 -1.5 72,649 + EX31_RS04770 0.58 -0.2 72,650 - EX31_RS04770 0.59 +1.1 72,797 - -0.4 72,797 - -0.2 72,797 - +1.0 72,800 + -0.0 72,815 + -0.1 72,816 - -0.2 72,860 - -0.2 72,903 + +0.3 72,903 + +0.6 72,903 + -0.4 72,903 + -2.7 72,903 + -0.4 72,904 - +0.3 72,904 - -0.9 72,969 - EX31_RS04775 0.11 +0.8 72,969 - EX31_RS04775 0.11 -1.8 73,067 + EX31_RS04775 0.22 -1.7 73,068 - EX31_RS04775 0.22 -0.9 73,070 + EX31_RS04775 0.22 -0.0 73,071 - EX31_RS04775 0.22 -0.1 73,071 - EX31_RS04775 0.22 -0.3 73,209 + EX31_RS04775 0.38 -1.0 73,302 + EX31_RS04775 0.48 -0.3 73,302 + EX31_RS04775 0.48 -0.1 73,303 - EX31_RS04775 0.48 -0.2 73,303 - EX31_RS04775 0.48 -0.5
Or see this region's nucleotide sequence