Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01845 and EX31_RS01850 are separated by 845 nucleotides EX31_RS01850 and EX31_RS01855 are separated by 31 nucleotides
EX31_RS01845: EX31_RS01845 - HAMP domain-containing protein, at 397,714 to 399,261
_RS01845
EX31_RS01850: EX31_RS01850 - type VI secretion system contractile sheath small subunit, at 400,107 to 400,601
_RS01850
EX31_RS01855: EX31_RS01855 - type VI secretion system contractile sheath large subunit, at 400,633 to 402,180
_RS01855
Position (kb) 400
401 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.165 kb on + strand at 400.057 kb on - strand at 400.095 kb on + strand at 400.115 kb on + strand at 400.165 kb on + strand, within EX31_RS01850 at 400.471 kb on + strand, within EX31_RS01850 at 400.474 kb on + strand, within EX31_RS01850 at 400.474 kb on + strand, within EX31_RS01850 at 400.474 kb on + strand, within EX31_RS01850 at 400.475 kb on - strand, within EX31_RS01850 at 400.475 kb on - strand, within EX31_RS01850 at 400.577 kb on + strand at 400.578 kb on - strand at 400.599 kb on + strand at 400.600 kb on - strand at 400.613 kb on + strand at 400.632 kb on - strand at 400.710 kb on - strand at 400.711 kb on + strand at 400.711 kb on + strand at 400.711 kb on + strand at 400.712 kb on - strand at 400.728 kb on + strand at 400.854 kb on + strand, within EX31_RS01855 at 400.943 kb on + strand, within EX31_RS01855 at 400.943 kb on + strand, within EX31_RS01855 at 400.944 kb on - strand, within EX31_RS01855 at 400.944 kb on - strand, within EX31_RS01855 at 401.060 kb on + strand, within EX31_RS01855 at 401.061 kb on - strand, within EX31_RS01855 at 401.131 kb on - strand, within EX31_RS01855 at 401.131 kb on - strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.146 kb on + strand, within EX31_RS01855 at 401.146 kb on + strand, within EX31_RS01855 at 401.147 kb on - strand, within EX31_RS01855 at 401.241 kb on + strand, within EX31_RS01855 at 401.246 kb on + strand, within EX31_RS01855 at 401.263 kb on - strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.348 kb on - strand, within EX31_RS01855 at 401.348 kb on - strand, within EX31_RS01855 at 401.366 kb on - strand, within EX31_RS01855 at 401.407 kb on + strand, within EX31_RS01855 at 401.485 kb on + strand, within EX31_RS01855 at 401.485 kb on + strand, within EX31_RS01855 at 401.522 kb on - strand, within EX31_RS01855
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 399,165 + +0.6 400,057 - +0.4 400,095 + -0.1 400,115 + -1.5 400,165 + EX31_RS01850 0.12 -0.1 400,471 + EX31_RS01850 0.74 +0.5 400,474 + EX31_RS01850 0.74 +0.7 400,474 + EX31_RS01850 0.74 +0.9 400,474 + EX31_RS01850 0.74 +1.4 400,475 - EX31_RS01850 0.74 -0.8 400,475 - EX31_RS01850 0.74 +0.7 400,577 + +0.5 400,578 - +0.4 400,599 + -0.8 400,600 - +0.7 400,613 + -0.8 400,632 - +0.1 400,710 - +0.4 400,711 + +0.6 400,711 + +0.4 400,711 + +0.2 400,712 - -0.7 400,728 + -1.5 400,854 + EX31_RS01855 0.14 -0.1 400,943 + EX31_RS01855 0.20 +2.0 400,943 + EX31_RS01855 0.20 +0.4 400,944 - EX31_RS01855 0.20 -0.2 400,944 - EX31_RS01855 0.20 +1.3 401,060 + EX31_RS01855 0.28 -0.0 401,061 - EX31_RS01855 0.28 -0.2 401,131 - EX31_RS01855 0.32 +0.6 401,131 - EX31_RS01855 0.32 +0.5 401,134 + EX31_RS01855 0.32 +0.3 401,134 + EX31_RS01855 0.32 -0.6 401,134 + EX31_RS01855 0.32 -0.2 401,134 + EX31_RS01855 0.32 -0.3 401,134 + EX31_RS01855 0.32 +0.0 401,134 + EX31_RS01855 0.32 -0.3 401,135 - EX31_RS01855 0.32 -0.3 401,135 - EX31_RS01855 0.32 -0.5 401,135 - EX31_RS01855 0.32 -0.6 401,135 - EX31_RS01855 0.32 +0.1 401,146 + EX31_RS01855 0.33 +1.0 401,146 + EX31_RS01855 0.33 +0.2 401,147 - EX31_RS01855 0.33 +1.3 401,241 + EX31_RS01855 0.39 +0.3 401,246 + EX31_RS01855 0.40 -0.3 401,263 - EX31_RS01855 0.41 -0.1 401,347 + EX31_RS01855 0.46 -2.0 401,347 + EX31_RS01855 0.46 +0.4 401,347 + EX31_RS01855 0.46 +0.1 401,348 - EX31_RS01855 0.46 +0.2 401,348 - EX31_RS01855 0.46 -0.9 401,366 - EX31_RS01855 0.47 +0.6 401,407 + EX31_RS01855 0.50 +0.2 401,485 + EX31_RS01855 0.55 +0.1 401,485 + EX31_RS01855 0.55 +0.2 401,522 - EX31_RS01855 0.57 -0.1
Or see this region's nucleotide sequence