Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01780 and EX31_RS01785 are separated by 34 nucleotides EX31_RS01785 and EX31_RS25905 are separated by 182 nucleotides EX31_RS25905 and EX31_RS01790 are separated by 42 nucleotides EX31_RS01790 and EX31_RS01795 overlap by 17 nucleotides
EX31_RS01780: EX31_RS01780 - hypothetical protein, at 382,433 to 382,804
_RS01780
EX31_RS01785: EX31_RS01785 - YfdQ family protein, at 382,839 to 383,666
_RS01785
EX31_RS25905: EX31_RS25905 - hypothetical protein, at 383,849 to 384,013
_RS25905
EX31_RS01790: EX31_RS01790 - excisionase, at 384,056 to 384,298
_RS01790
EX31_RS01795: EX31_RS01795 - tyrosine-type recombinase/integrase, at 384,282 to 385,406
_RS01795
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 381.868 kb on + strand at 381.869 kb on - strand at 381.876 kb on + strand at 381.924 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 382.006 kb on - strand at 382.078 kb on + strand at 382.092 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.281 kb on - strand at 382.321 kb on + strand at 382.380 kb on + strand at 382.381 kb on - strand at 382.447 kb on + strand at 382.447 kb on + strand at 382.447 kb on + strand at 382.448 kb on - strand at 382.523 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.655 kb on - strand, within EX31_RS01780 at 382.703 kb on + strand, within EX31_RS01780 at 382.704 kb on - strand, within EX31_RS01780 at 382.704 kb on - strand, within EX31_RS01780 at 382.836 kb on - strand at 382.836 kb on - strand at 382.836 kb on - strand at 382.836 kb on - strand at 382.838 kb on + strand at 382.838 kb on + strand at 382.839 kb on - strand at 382.839 kb on - strand at 383.058 kb on + strand, within EX31_RS01785 at 383.171 kb on + strand, within EX31_RS01785 at 383.171 kb on + strand, within EX31_RS01785 at 383.416 kb on + strand, within EX31_RS01785 at 383.416 kb on + strand, within EX31_RS01785 at 383.438 kb on + strand, within EX31_RS01785 at 383.438 kb on + strand, within EX31_RS01785 at 383.439 kb on - strand, within EX31_RS01785 at 383.460 kb on - strand, within EX31_RS01785 at 383.472 kb on + strand, within EX31_RS01785 at 383.473 kb on - strand, within EX31_RS01785 at 383.679 kb on - strand at 383.715 kb on + strand at 383.818 kb on + strand at 383.828 kb on + strand at 383.829 kb on - strand at 383.832 kb on + strand at 383.832 kb on + strand at 383.832 kb on + strand at 383.837 kb on - strand at 383.918 kb on - strand, within EX31_RS25905 at 383.985 kb on - strand, within EX31_RS25905 at 384.012 kb on - strand at 384.031 kb on + strand at 384.033 kb on + strand at 384.053 kb on + strand at 384.054 kb on - strand at 384.054 kb on - strand at 384.054 kb on - strand at 384.055 kb on + strand at 384.055 kb on + strand at 384.055 kb on + strand at 384.055 kb on + strand at 384.055 kb on + strand at 384.055 kb on + strand at 384.055 kb on + strand at 384.056 kb on - strand at 384.056 kb on - strand at 384.111 kb on + strand, within EX31_RS01790 at 384.112 kb on - strand, within EX31_RS01790 at 384.116 kb on - strand, within EX31_RS01790 at 384.137 kb on + strand, within EX31_RS01790 at 384.156 kb on + strand, within EX31_RS01790 at 384.158 kb on + strand, within EX31_RS01790 at 384.159 kb on - strand, within EX31_RS01790 at 384.251 kb on - strand, within EX31_RS01790 at 384.252 kb on + strand, within EX31_RS01790 at 384.252 kb on + strand, within EX31_RS01790 at 384.253 kb on - strand, within EX31_RS01790 at 384.253 kb on - strand, within EX31_RS01790 at 384.297 kb on - strand at 384.297 kb on - strand at 384.300 kb on + strand at 384.300 kb on + strand at 384.300 kb on + strand at 384.301 kb on - strand at 384.301 kb on - strand at 384.301 kb on - strand at 384.301 kb on - strand at 384.301 kb on - strand at 384.303 kb on - strand at 384.330 kb on + strand at 384.367 kb on - strand at 384.386 kb on + strand at 384.386 kb on + strand at 384.387 kb on - strand at 384.437 kb on - strand, within EX31_RS01795 at 384.447 kb on - strand, within EX31_RS01795 at 384.528 kb on - strand, within EX31_RS01795 at 384.546 kb on - strand, within EX31_RS01795 at 384.550 kb on - strand, within EX31_RS01795
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 381,868 + +0.5 381,869 - +1.0 381,876 + +0.6 381,924 - +0.8 381,949 - -0.3 381,949 - -0.5 381,949 - +1.3 381,949 - +1.3 382,006 - -0.4 382,078 + -0.2 382,092 + -0.9 382,221 + -0.3 382,221 + +0.1 382,221 + +0.5 382,221 + -0.8 382,221 + -0.2 382,221 + +0.3 382,221 + -0.4 382,221 + +0.7 382,221 + -0.1 382,281 - -2.2 382,321 + +0.5 382,380 + +1.0 382,381 - +0.4 382,447 + +0.3 382,447 + -0.1 382,447 + -0.1 382,448 - -2.9 382,523 - EX31_RS01780 0.24 +0.3 382,655 - EX31_RS01780 0.60 +1.7 382,655 - EX31_RS01780 0.60 +0.9 382,655 - EX31_RS01780 0.60 -0.3 382,655 - EX31_RS01780 0.60 +0.9 382,703 + EX31_RS01780 0.73 -1.3 382,704 - EX31_RS01780 0.73 +0.4 382,704 - EX31_RS01780 0.73 -0.1 382,836 - -1.9 382,836 - +0.2 382,836 - -1.0 382,836 - -0.3 382,838 + +1.0 382,838 + -1.0 382,839 - -0.2 382,839 - -0.7 383,058 + EX31_RS01785 0.26 +1.1 383,171 + EX31_RS01785 0.40 +1.0 383,171 + EX31_RS01785 0.40 +0.7 383,416 + EX31_RS01785 0.70 -2.3 383,416 + EX31_RS01785 0.70 +0.2 383,438 + EX31_RS01785 0.72 +1.0 383,438 + EX31_RS01785 0.72 +0.4 383,439 - EX31_RS01785 0.72 +0.4 383,460 - EX31_RS01785 0.75 -0.0 383,472 + EX31_RS01785 0.76 +0.6 383,473 - EX31_RS01785 0.77 +0.8 383,679 - +1.6 383,715 + -2.2 383,818 + -0.3 383,828 + -0.8 383,829 - +0.2 383,832 + +0.7 383,832 + -0.1 383,832 + +0.4 383,837 - -0.8 383,918 - EX31_RS25905 0.42 -2.2 383,985 - EX31_RS25905 0.82 +0.4 384,012 - -0.2 384,031 + +0.3 384,033 + +0.9 384,053 + +1.0 384,054 - -0.7 384,054 - +0.2 384,054 - -1.3 384,055 + +1.4 384,055 + +0.3 384,055 + -0.0 384,055 + +0.5 384,055 + -2.2 384,055 + +1.2 384,055 + +0.7 384,056 - +0.4 384,056 - -0.2 384,111 + EX31_RS01790 0.23 -0.6 384,112 - EX31_RS01790 0.23 +0.0 384,116 - EX31_RS01790 0.25 +0.8 384,137 + EX31_RS01790 0.33 -1.3 384,156 + EX31_RS01790 0.41 -0.1 384,158 + EX31_RS01790 0.42 +0.7 384,159 - EX31_RS01790 0.42 -0.2 384,251 - EX31_RS01790 0.80 -0.0 384,252 + EX31_RS01790 0.81 -2.9 384,252 + EX31_RS01790 0.81 -0.4 384,253 - EX31_RS01790 0.81 -0.7 384,253 - EX31_RS01790 0.81 +0.8 384,297 - +0.0 384,297 - +1.1 384,300 + -0.9 384,300 + +0.7 384,300 + +0.1 384,301 - -0.5 384,301 - -0.2 384,301 - -0.2 384,301 - -1.4 384,301 - -0.3 384,303 - +0.1 384,330 + -1.3 384,367 - +0.1 384,386 + +0.8 384,386 + +1.4 384,387 - +0.8 384,437 - EX31_RS01795 0.14 +0.4 384,447 - EX31_RS01795 0.15 -0.5 384,528 - EX31_RS01795 0.22 +0.1 384,546 - EX31_RS01795 0.23 +1.0 384,550 - EX31_RS01795 0.24 -0.9
Or see this region's nucleotide sequence