Strain Fitness in Rahnella sp. WP5 around EX31_RS19545

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS19540 and EX31_RS19545 are separated by 54 nucleotidesEX31_RS19545 and EX31_RS19550 are separated by 27 nucleotidesEX31_RS19550 and EX31_RS19555 overlap by 4 nucleotides EX31_RS19540: EX31_RS19540 - peptidase T, at 539,475 to 540,707 _RS19540 EX31_RS19545: EX31_RS19545 - histidine ABC transporter ATP-binding protein HisP, at 540,762 to 541,535 _RS19545 EX31_RS19550: EX31_RS19550 - ABC transporter permease, at 541,563 to 542,276 _RS19550 EX31_RS19555: EX31_RS19555 - ABC transporter permease subunit, at 542,273 to 542,959 _RS19555 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1at 539.777 kb on + strand, within EX31_RS19540at 539.853 kb on + strand, within EX31_RS19540at 539.853 kb on + strand, within EX31_RS19540at 539.853 kb on + strand, within EX31_RS19540at 539.853 kb on + strand, within EX31_RS19540at 539.854 kb on - strand, within EX31_RS19540at 539.867 kb on + strand, within EX31_RS19540at 539.870 kb on + strand, within EX31_RS19540at 539.870 kb on + strand, within EX31_RS19540at 539.870 kb on + strand, within EX31_RS19540at 539.871 kb on - strand, within EX31_RS19540at 540.063 kb on + strand, within EX31_RS19540at 540.064 kb on - strand, within EX31_RS19540at 540.064 kb on - strand, within EX31_RS19540at 540.097 kb on + strand, within EX31_RS19540at 540.097 kb on + strand, within EX31_RS19540at 540.097 kb on + strand, within EX31_RS19540at 540.097 kb on + strand, within EX31_RS19540at 540.097 kb on + strand, within EX31_RS19540at 540.098 kb on - strand, within EX31_RS19540at 540.099 kb on + strand, within EX31_RS19540at 540.100 kb on - strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.264 kb on + strand, within EX31_RS19540at 540.265 kb on - strand, within EX31_RS19540at 540.265 kb on - strand, within EX31_RS19540at 540.265 kb on - strand, within EX31_RS19540at 540.265 kb on - strand, within EX31_RS19540at 540.266 kb on + strand, within EX31_RS19540at 540.266 kb on + strand, within EX31_RS19540at 540.266 kb on + strand, within EX31_RS19540at 540.266 kb on + strand, within EX31_RS19540at 540.266 kb on + strand, within EX31_RS19540at 540.267 kb on - strand, within EX31_RS19540at 540.267 kb on - strand, within EX31_RS19540at 540.267 kb on - strand, within EX31_RS19540at 540.321 kb on - strand, within EX31_RS19540at 540.356 kb on + strand, within EX31_RS19540at 540.389 kb on - strand, within EX31_RS19540at 540.434 kb on + strand, within EX31_RS19540at 540.435 kb on - strand, within EX31_RS19540at 540.438 kb on + strand, within EX31_RS19540at 540.438 kb on + strand, within EX31_RS19540at 540.438 kb on + strand, within EX31_RS19540at 540.438 kb on + strand, within EX31_RS19540at 540.439 kb on - strand, within EX31_RS19540at 540.446 kb on + strand, within EX31_RS19540at 540.446 kb on + strand, within EX31_RS19540at 540.446 kb on + strand, within EX31_RS19540at 540.447 kb on - strand, within EX31_RS19540at 540.580 kb on + strand, within EX31_RS19540at 540.594 kb on + strandat 540.594 kb on + strandat 540.594 kb on + strandat 540.595 kb on - strandat 540.664 kb on - strandat 540.706 kb on - strandat 540.722 kb on + strandat 540.722 kb on + strandat 540.763 kb on + strandat 540.763 kb on + strandat 540.957 kb on - strand, within EX31_RS19545at 541.050 kb on - strand, within EX31_RS19545at 541.050 kb on - strand, within EX31_RS19545at 541.050 kb on - strand, within EX31_RS19545at 541.090 kb on + strand, within EX31_RS19545at 541.091 kb on - strand, within EX31_RS19545at 541.094 kb on + strand, within EX31_RS19545at 541.094 kb on + strand, within EX31_RS19545at 541.095 kb on - strand, within EX31_RS19545at 541.095 kb on - strand, within EX31_RS19545at 541.095 kb on - strand, within EX31_RS19545at 541.095 kb on - strand, within EX31_RS19545at 541.095 kb on - strand, within EX31_RS19545at 541.132 kb on + strand, within EX31_RS19545at 541.286 kb on + strand, within EX31_RS19545at 541.340 kb on + strand, within EX31_RS19545at 541.340 kb on + strand, within EX31_RS19545at 541.344 kb on - strand, within EX31_RS19545at 541.382 kb on + strand, within EX31_RS19545at 541.382 kb on + strand, within EX31_RS19545at 541.383 kb on - strand, within EX31_RS19545at 541.383 kb on - strand, within EX31_RS19545at 541.383 kb on - strand, within EX31_RS19545at 541.400 kb on + strand, within EX31_RS19545at 541.400 kb on + strand, within EX31_RS19545at 541.428 kb on - strand, within EX31_RS19545at 541.431 kb on - strand, within EX31_RS19545at 541.492 kb on + strandat 541.493 kb on - strandat 541.536 kb on - strandat 541.536 kb on - strandat 541.555 kb on - strandat 541.562 kb on - strandat 541.581 kb on + strandat 541.581 kb on + strandat 541.581 kb on + strandat 541.581 kb on + strandat 541.581 kb on + strandat 541.582 kb on - strandat 541.582 kb on - strandat 541.582 kb on - strandat 541.649 kb on - strand, within EX31_RS19550at 541.675 kb on + strand, within EX31_RS19550at 541.676 kb on - strand, within EX31_RS19550at 541.687 kb on + strand, within EX31_RS19550at 541.688 kb on - strand, within EX31_RS19550at 541.743 kb on - strand, within EX31_RS19550at 541.784 kb on + strand, within EX31_RS19550at 541.784 kb on + strand, within EX31_RS19550at 541.789 kb on + strand, within EX31_RS19550at 541.789 kb on + strand, within EX31_RS19550at 541.790 kb on - strand, within EX31_RS19550at 541.790 kb on - strand, within EX31_RS19550at 541.790 kb on - strand, within EX31_RS19550at 541.790 kb on - strand, within EX31_RS19550at 541.790 kb on - strand, within EX31_RS19550at 541.805 kb on + strand, within EX31_RS19550at 541.805 kb on + strand, within EX31_RS19550at 541.810 kb on - strand, within EX31_RS19550at 541.810 kb on - strand, within EX31_RS19550at 541.827 kb on - strand, within EX31_RS19550at 541.837 kb on + strand, within EX31_RS19550at 541.837 kb on + strand, within EX31_RS19550at 541.837 kb on + strand, within EX31_RS19550at 541.837 kb on + strand, within EX31_RS19550at 541.838 kb on - strand, within EX31_RS19550at 541.838 kb on - strand, within EX31_RS19550at 541.845 kb on - strand, within EX31_RS19550at 541.845 kb on - strand, within EX31_RS19550at 541.965 kb on - strand, within EX31_RS19550at 541.965 kb on - strand, within EX31_RS19550at 541.970 kb on + strand, within EX31_RS19550at 541.970 kb on + strand, within EX31_RS19550at 541.970 kb on + strand, within EX31_RS19550at 541.970 kb on + strand, within EX31_RS19550at 542.029 kb on + strand, within EX31_RS19550at 542.029 kb on + strand, within EX31_RS19550at 542.030 kb on - strand, within EX31_RS19550at 542.030 kb on - strand, within EX31_RS19550at 542.030 kb on - strand, within EX31_RS19550at 542.042 kb on - strand, within EX31_RS19550at 542.062 kb on + strand, within EX31_RS19550at 542.062 kb on + strand, within EX31_RS19550at 542.062 kb on + strand, within EX31_RS19550at 542.062 kb on + strand, within EX31_RS19550at 542.062 kb on + strand, within EX31_RS19550at 542.062 kb on + strand, within EX31_RS19550at 542.063 kb on - strand, within EX31_RS19550at 542.085 kb on - strand, within EX31_RS19550at 542.086 kb on + strand, within EX31_RS19550at 542.087 kb on - strand, within EX31_RS19550at 542.092 kb on + strand, within EX31_RS19550at 542.092 kb on + strand, within EX31_RS19550at 542.093 kb on - strand, within EX31_RS19550at 542.093 kb on - strand, within EX31_RS19550at 542.093 kb on - strand, within EX31_RS19550at 542.123 kb on + strand, within EX31_RS19550at 542.161 kb on - strand, within EX31_RS19550at 542.217 kb on - strandat 542.250 kb on - strandat 542.250 kb on - strandat 542.250 kb on - strandat 542.255 kb on - strandat 542.276 kb on + strandat 542.386 kb on - strand, within EX31_RS19555at 542.397 kb on + strand, within EX31_RS19555at 542.398 kb on - strand, within EX31_RS19555at 542.398 kb on - strand, within EX31_RS19555at 542.398 kb on - strand, within EX31_RS19555at 542.398 kb on - strand, within EX31_RS19555at 542.535 kb on - strand, within EX31_RS19555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
539,777 + EX31_RS19540 0.24 -0.0
539,853 + EX31_RS19540 0.31 +0.1
539,853 + EX31_RS19540 0.31 -0.5
539,853 + EX31_RS19540 0.31 +0.3
539,853 + EX31_RS19540 0.31 +0.9
539,854 - EX31_RS19540 0.31 +0.5
539,867 + EX31_RS19540 0.32 -0.3
539,870 + EX31_RS19540 0.32 -2.0
539,870 + EX31_RS19540 0.32 +0.6
539,870 + EX31_RS19540 0.32 +0.5
539,871 - EX31_RS19540 0.32 +0.3
540,063 + EX31_RS19540 0.48 -1.1
540,064 - EX31_RS19540 0.48 -0.6
540,064 - EX31_RS19540 0.48 -0.0
540,097 + EX31_RS19540 0.50 -1.4
540,097 + EX31_RS19540 0.50 -0.1
540,097 + EX31_RS19540 0.50 +0.3
540,097 + EX31_RS19540 0.50 +1.0
540,097 + EX31_RS19540 0.50 -1.2
540,098 - EX31_RS19540 0.51 -1.0
540,099 + EX31_RS19540 0.51 -0.5
540,100 - EX31_RS19540 0.51 +0.2
540,264 + EX31_RS19540 0.64 -0.1
540,264 + EX31_RS19540 0.64 -0.0
540,264 + EX31_RS19540 0.64 -0.6
540,264 + EX31_RS19540 0.64 -0.1
540,264 + EX31_RS19540 0.64 +1.0
540,264 + EX31_RS19540 0.64 -0.6
540,264 + EX31_RS19540 0.64 -0.2
540,264 + EX31_RS19540 0.64 +0.8
540,264 + EX31_RS19540 0.64 +0.4
540,264 + EX31_RS19540 0.64 -0.3
540,264 + EX31_RS19540 0.64 -0.3
540,264 + EX31_RS19540 0.64 +0.2
540,265 - EX31_RS19540 0.64 +0.6
540,265 - EX31_RS19540 0.64 -0.9
540,265 - EX31_RS19540 0.64 +0.3
540,265 - EX31_RS19540 0.64 +0.2
540,266 + EX31_RS19540 0.64 -0.8
540,266 + EX31_RS19540 0.64 +0.7
540,266 + EX31_RS19540 0.64 +0.2
540,266 + EX31_RS19540 0.64 +0.1
540,266 + EX31_RS19540 0.64 -0.2
540,267 - EX31_RS19540 0.64 -0.1
540,267 - EX31_RS19540 0.64 -0.1
540,267 - EX31_RS19540 0.64 -0.3
540,321 - EX31_RS19540 0.69 -0.5
540,356 + EX31_RS19540 0.71 -0.5
540,389 - EX31_RS19540 0.74 -0.1
540,434 + EX31_RS19540 0.78 -0.3
540,435 - EX31_RS19540 0.78 -0.5
540,438 + EX31_RS19540 0.78 +0.2
540,438 + EX31_RS19540 0.78 +0.7
540,438 + EX31_RS19540 0.78 -0.3
540,438 + EX31_RS19540 0.78 -0.5
540,439 - EX31_RS19540 0.78 +0.6
540,446 + EX31_RS19540 0.79 -0.3
540,446 + EX31_RS19540 0.79 +0.1
540,446 + EX31_RS19540 0.79 -0.7
540,447 - EX31_RS19540 0.79 -0.6
540,580 + EX31_RS19540 0.90 +0.3
540,594 + +0.2
540,594 + +0.1
540,594 + +1.3
540,595 - -1.3
540,664 - +0.5
540,706 - +0.2
540,722 + +1.0
540,722 + -0.2
540,763 + +0.4
540,763 + +0.8
540,957 - EX31_RS19545 0.25 +0.1
541,050 - EX31_RS19545 0.37 -1.2
541,050 - EX31_RS19545 0.37 +0.6
541,050 - EX31_RS19545 0.37 +0.2
541,090 + EX31_RS19545 0.42 -0.4
541,091 - EX31_RS19545 0.43 -0.1
541,094 + EX31_RS19545 0.43 -0.5
541,094 + EX31_RS19545 0.43 -1.5
541,095 - EX31_RS19545 0.43 +0.3
541,095 - EX31_RS19545 0.43 +0.2
541,095 - EX31_RS19545 0.43 -0.4
541,095 - EX31_RS19545 0.43 -0.6
541,095 - EX31_RS19545 0.43 -0.2
541,132 + EX31_RS19545 0.48 -0.7
541,286 + EX31_RS19545 0.68 -0.5
541,340 + EX31_RS19545 0.75 +0.6
541,340 + EX31_RS19545 0.75 -0.5
541,344 - EX31_RS19545 0.75 -0.4
541,382 + EX31_RS19545 0.80 -1.0
541,382 + EX31_RS19545 0.80 -0.6
541,383 - EX31_RS19545 0.80 +0.2
541,383 - EX31_RS19545 0.80 +1.3
541,383 - EX31_RS19545 0.80 +0.1
541,400 + EX31_RS19545 0.82 +0.3
541,400 + EX31_RS19545 0.82 +0.5
541,428 - EX31_RS19545 0.86 -0.3
541,431 - EX31_RS19545 0.86 -0.8
541,492 + -1.5
541,493 - +0.3
541,536 - -0.3
541,536 - +0.3
541,555 - +0.2
541,562 - +0.8
541,581 + +0.6
541,581 + -1.0
541,581 + -0.3
541,581 + +0.5
541,581 + +0.0
541,582 - +0.4
541,582 - -0.4
541,582 - +0.3
541,649 - EX31_RS19550 0.12 +0.8
541,675 + EX31_RS19550 0.16 +0.6
541,676 - EX31_RS19550 0.16 +0.5
541,687 + EX31_RS19550 0.17 +0.1
541,688 - EX31_RS19550 0.18 +0.0
541,743 - EX31_RS19550 0.25 +0.2
541,784 + EX31_RS19550 0.31 -0.2
541,784 + EX31_RS19550 0.31 +0.9
541,789 + EX31_RS19550 0.32 -0.1
541,789 + EX31_RS19550 0.32 -0.6
541,790 - EX31_RS19550 0.32 -0.4
541,790 - EX31_RS19550 0.32 -0.1
541,790 - EX31_RS19550 0.32 -0.9
541,790 - EX31_RS19550 0.32 +0.1
541,790 - EX31_RS19550 0.32 -1.3
541,805 + EX31_RS19550 0.34 +0.6
541,805 + EX31_RS19550 0.34 -0.5
541,810 - EX31_RS19550 0.35 -0.1
541,810 - EX31_RS19550 0.35 -0.9
541,827 - EX31_RS19550 0.37 -0.7
541,837 + EX31_RS19550 0.38 -0.4
541,837 + EX31_RS19550 0.38 +0.5
541,837 + EX31_RS19550 0.38 +0.9
541,837 + EX31_RS19550 0.38 -0.3
541,838 - EX31_RS19550 0.39 -0.3
541,838 - EX31_RS19550 0.39 -2.1
541,845 - EX31_RS19550 0.39 -0.6
541,845 - EX31_RS19550 0.39 +0.4
541,965 - EX31_RS19550 0.56 -0.1
541,965 - EX31_RS19550 0.56 -0.3
541,970 + EX31_RS19550 0.57 -0.8
541,970 + EX31_RS19550 0.57 -0.1
541,970 + EX31_RS19550 0.57 +0.3
541,970 + EX31_RS19550 0.57 +0.5
542,029 + EX31_RS19550 0.65 +0.5
542,029 + EX31_RS19550 0.65 +0.5
542,030 - EX31_RS19550 0.65 -0.3
542,030 - EX31_RS19550 0.65 +0.4
542,030 - EX31_RS19550 0.65 +0.7
542,042 - EX31_RS19550 0.67 -0.1
542,062 + EX31_RS19550 0.70 -0.5
542,062 + EX31_RS19550 0.70 -0.4
542,062 + EX31_RS19550 0.70 -0.7
542,062 + EX31_RS19550 0.70 -1.2
542,062 + EX31_RS19550 0.70 +0.0
542,062 + EX31_RS19550 0.70 +0.3
542,063 - EX31_RS19550 0.70 -0.2
542,085 - EX31_RS19550 0.73 +0.0
542,086 + EX31_RS19550 0.73 +0.2
542,087 - EX31_RS19550 0.73 -0.2
542,092 + EX31_RS19550 0.74 +0.1
542,092 + EX31_RS19550 0.74 -1.0
542,093 - EX31_RS19550 0.74 -0.3
542,093 - EX31_RS19550 0.74 +0.5
542,093 - EX31_RS19550 0.74 -1.1
542,123 + EX31_RS19550 0.78 -0.7
542,161 - EX31_RS19550 0.84 -0.5
542,217 - -1.3
542,250 - +0.6
542,250 - +1.0
542,250 - +0.5
542,255 - +0.2
542,276 + -0.6
542,386 - EX31_RS19555 0.16 +0.3
542,397 + EX31_RS19555 0.18 +0.4
542,398 - EX31_RS19555 0.18 +0.8
542,398 - EX31_RS19555 0.18 +0.2
542,398 - EX31_RS19555 0.18 -0.3
542,398 - EX31_RS19555 0.18 -0.6
542,535 - EX31_RS19555 0.38 +0.2

Or see this region's nucleotide sequence