Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18195 and EX31_RS18200 overlap by 4 nucleotides EX31_RS18200 and EX31_RS18205 are separated by 381 nucleotides EX31_RS18205 and EX31_RS18210 are separated by 95 nucleotides EX31_RS18210 and EX31_RS18215 are separated by 261 nucleotides
EX31_RS18195: EX31_RS18195 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 208,404 to 209,162
_RS18195
EX31_RS18200: EX31_RS18200 - hypothetical protein, at 209,159 to 209,341
_RS18200
EX31_RS18205: EX31_RS18205 - winged helix-turn-helix domain-containing protein, at 209,723 to 210,946
_RS18205
EX31_RS18210: EX31_RS18210 - cold-shock protein, at 211,042 to 211,254
_RS18210
EX31_RS18215: EX31_RS18215 - cold-shock protein, at 211,516 to 211,725
_RS18215
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 209.255 kb on - strand, within EX31_RS18200 at 209.391 kb on - strand at 209.415 kb on - strand at 209.431 kb on - strand at 209.435 kb on + strand at 209.435 kb on + strand at 209.492 kb on - strand at 209.551 kb on + strand at 209.552 kb on - strand at 209.579 kb on + strand at 209.580 kb on - strand at 209.592 kb on + strand at 209.593 kb on - strand at 209.654 kb on + strand at 209.724 kb on + strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.768 kb on + strand at 209.768 kb on + strand at 209.769 kb on - strand at 209.831 kb on + strand at 209.831 kb on + strand at 209.831 kb on + strand at 209.831 kb on + strand at 209.831 kb on + strand at 209.832 kb on - strand at 209.832 kb on - strand at 209.832 kb on - strand at 209.832 kb on - strand at 209.832 kb on - strand at 209.832 kb on - strand at 209.832 kb on - strand at 209.833 kb on + strand at 209.833 kb on + strand at 209.897 kb on + strand, within EX31_RS18205 at 209.957 kb on + strand, within EX31_RS18205 at 209.957 kb on + strand, within EX31_RS18205 at 209.974 kb on - strand, within EX31_RS18205 at 209.980 kb on - strand, within EX31_RS18205 at 210.002 kb on - strand, within EX31_RS18205 at 210.002 kb on - strand, within EX31_RS18205 at 210.029 kb on - strand, within EX31_RS18205 at 210.156 kb on + strand, within EX31_RS18205 at 210.156 kb on + strand, within EX31_RS18205 at 210.157 kb on - strand, within EX31_RS18205 at 210.159 kb on + strand, within EX31_RS18205 at 210.159 kb on + strand, within EX31_RS18205 at 210.160 kb on - strand, within EX31_RS18205 at 210.160 kb on - strand, within EX31_RS18205 at 210.160 kb on - strand, within EX31_RS18205 at 210.160 kb on - strand, within EX31_RS18205 at 210.160 kb on - strand, within EX31_RS18205 at 210.164 kb on - strand, within EX31_RS18205 at 210.193 kb on + strand, within EX31_RS18205 at 210.211 kb on + strand, within EX31_RS18205 at 210.212 kb on + strand, within EX31_RS18205 at 210.213 kb on - strand, within EX31_RS18205 at 210.236 kb on - strand, within EX31_RS18205 at 210.258 kb on + strand, within EX31_RS18205 at 210.258 kb on + strand, within EX31_RS18205 at 210.295 kb on - strand, within EX31_RS18205 at 210.410 kb on - strand, within EX31_RS18205 at 210.443 kb on - strand, within EX31_RS18205 at 210.505 kb on + strand, within EX31_RS18205 at 210.506 kb on - strand, within EX31_RS18205 at 210.674 kb on - strand, within EX31_RS18205 at 210.747 kb on + strand, within EX31_RS18205 at 210.748 kb on - strand, within EX31_RS18205 at 210.748 kb on - strand, within EX31_RS18205 at 210.751 kb on + strand, within EX31_RS18205 at 210.751 kb on + strand, within EX31_RS18205 at 210.751 kb on + strand, within EX31_RS18205 at 210.751 kb on + strand, within EX31_RS18205 at 210.751 kb on + strand, within EX31_RS18205 at 210.751 kb on + strand, within EX31_RS18205 at 210.752 kb on - strand, within EX31_RS18205 at 210.756 kb on - strand, within EX31_RS18205 at 210.800 kb on + strand, within EX31_RS18205 at 210.801 kb on - strand, within EX31_RS18205 at 210.880 kb on + strand at 210.899 kb on + strand at 210.899 kb on + strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.900 kb on - strand at 210.930 kb on - strand at 210.931 kb on + strand at 210.932 kb on - strand at 210.946 kb on + strand at 210.947 kb on - strand at 210.947 kb on - strand at 210.947 kb on - strand at 210.947 kb on - strand at 210.947 kb on - strand at 210.969 kb on + strand at 210.990 kb on + strand at 210.991 kb on - strand at 210.991 kb on - strand at 210.991 kb on - strand at 210.991 kb on - strand at 211.007 kb on - strand at 211.053 kb on + strand at 211.053 kb on + strand at 211.054 kb on - strand at 211.054 kb on - strand at 211.131 kb on + strand, within EX31_RS18210 at 211.132 kb on - strand, within EX31_RS18210 at 211.141 kb on - strand, within EX31_RS18210 at 211.155 kb on + strand, within EX31_RS18210 at 211.155 kb on + strand, within EX31_RS18210 at 211.156 kb on - strand, within EX31_RS18210 at 211.156 kb on - strand, within EX31_RS18210 at 211.156 kb on - strand, within EX31_RS18210 at 211.167 kb on - strand, within EX31_RS18210 at 211.222 kb on - strand, within EX31_RS18210 at 211.223 kb on + strand, within EX31_RS18210 at 211.224 kb on - strand, within EX31_RS18210 at 211.224 kb on - strand, within EX31_RS18210 at 211.231 kb on - strand, within EX31_RS18210 at 211.231 kb on - strand, within EX31_RS18210 at 211.231 kb on - strand, within EX31_RS18210 at 211.231 kb on - strand, within EX31_RS18210 at 211.231 kb on - strand, within EX31_RS18210 at 211.235 kb on - strand at 211.300 kb on + strand at 211.301 kb on - strand at 211.328 kb on - strand at 211.342 kb on + strand at 211.385 kb on - strand at 211.404 kb on - strand at 211.404 kb on - strand at 211.404 kb on - strand at 211.404 kb on - strand at 211.404 kb on - strand at 211.404 kb on - strand at 211.414 kb on + strand at 211.415 kb on - strand at 211.434 kb on + strand at 211.434 kb on + strand at 211.434 kb on + strand at 211.435 kb on - strand at 211.435 kb on - strand at 211.459 kb on - strand at 211.470 kb on - strand at 211.470 kb on - strand at 211.515 kb on - strand at 211.528 kb on - strand at 211.571 kb on + strand, within EX31_RS18215 at 211.571 kb on + strand, within EX31_RS18215 at 211.571 kb on + strand, within EX31_RS18215 at 211.572 kb on - strand, within EX31_RS18215 at 211.572 kb on - strand, within EX31_RS18215 at 211.572 kb on - strand, within EX31_RS18215 at 211.572 kb on - strand, within EX31_RS18215 at 211.572 kb on - strand, within EX31_RS18215 at 211.577 kb on - strand, within EX31_RS18215 at 211.577 kb on - strand, within EX31_RS18215 at 211.577 kb on - strand, within EX31_RS18215 at 211.577 kb on - strand, within EX31_RS18215 at 211.634 kb on - strand, within EX31_RS18215 at 211.639 kb on + strand, within EX31_RS18215 at 211.640 kb on - strand, within EX31_RS18215 at 211.640 kb on - strand, within EX31_RS18215 at 211.640 kb on - strand, within EX31_RS18215 at 211.640 kb on - strand, within EX31_RS18215 at 211.640 kb on - strand, within EX31_RS18215 at 211.640 kb on - strand, within EX31_RS18215 at 211.640 kb on - strand, within EX31_RS18215 at 211.702 kb on - strand, within EX31_RS18215 at 211.702 kb on - strand, within EX31_RS18215 at 211.725 kb on + strand at 211.726 kb on - strand at 211.726 kb on - strand at 211.726 kb on - strand at 211.730 kb on - strand at 211.780 kb on - strand at 211.792 kb on + strand at 211.793 kb on - strand at 211.793 kb on - strand at 211.793 kb on - strand at 211.793 kb on - strand at 211.793 kb on - strand at 211.793 kb on - strand at 211.793 kb on - strand at 211.793 kb on - strand at 211.796 kb on + strand at 211.796 kb on + strand at 211.796 kb on + strand at 211.797 kb on - strand at 211.797 kb on - strand at 211.797 kb on - strand at 211.809 kb on + strand at 211.810 kb on - strand at 211.810 kb on - strand at 211.810 kb on - strand at 211.810 kb on - strand at 211.810 kb on - strand at 211.849 kb on + strand at 211.850 kb on - strand at 211.877 kb on - strand at 211.877 kb on - strand at 211.885 kb on - strand at 211.885 kb on - strand at 211.885 kb on - strand at 211.885 kb on - strand at 211.888 kb on + strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.889 kb on - strand at 211.926 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 209,255 - EX31_RS18200 0.52 +0.5 209,391 - -0.4 209,415 - +1.0 209,431 - -0.5 209,435 + -0.2 209,435 + +0.8 209,492 - -0.1 209,551 + -0.0 209,552 - +0.0 209,579 + +0.9 209,580 - +0.6 209,592 + +0.1 209,593 - +0.1 209,654 + -0.0 209,724 + +0.5 209,725 - +0.0 209,725 - -0.4 209,725 - -0.2 209,768 + -0.0 209,768 + +1.7 209,769 - -0.2 209,831 + +0.2 209,831 + -1.5 209,831 + +1.8 209,831 + -1.6 209,831 + -0.3 209,832 - -0.4 209,832 - +1.1 209,832 - -0.7 209,832 - +0.1 209,832 - +0.5 209,832 - +0.1 209,832 - -1.0 209,833 + +0.5 209,833 + -1.3 209,897 + EX31_RS18205 0.14 -0.2 209,957 + EX31_RS18205 0.19 -0.2 209,957 + EX31_RS18205 0.19 -0.6 209,974 - EX31_RS18205 0.21 +0.3 209,980 - EX31_RS18205 0.21 -0.2 210,002 - EX31_RS18205 0.23 -0.3 210,002 - EX31_RS18205 0.23 -1.2 210,029 - EX31_RS18205 0.25 +0.6 210,156 + EX31_RS18205 0.35 -1.1 210,156 + EX31_RS18205 0.35 +1.1 210,157 - EX31_RS18205 0.35 -0.2 210,159 + EX31_RS18205 0.36 -1.4 210,159 + EX31_RS18205 0.36 +0.6 210,160 - EX31_RS18205 0.36 -1.8 210,160 - EX31_RS18205 0.36 -0.0 210,160 - EX31_RS18205 0.36 +0.8 210,160 - EX31_RS18205 0.36 +0.4 210,160 - EX31_RS18205 0.36 +0.0 210,164 - EX31_RS18205 0.36 +0.5 210,193 + EX31_RS18205 0.38 -0.6 210,211 + EX31_RS18205 0.40 -0.5 210,212 + EX31_RS18205 0.40 +1.0 210,213 - EX31_RS18205 0.40 -0.6 210,236 - EX31_RS18205 0.42 -0.1 210,258 + EX31_RS18205 0.44 -0.2 210,258 + EX31_RS18205 0.44 +0.3 210,295 - EX31_RS18205 0.47 +0.2 210,410 - EX31_RS18205 0.56 -0.1 210,443 - EX31_RS18205 0.59 -1.4 210,505 + EX31_RS18205 0.64 -0.8 210,506 - EX31_RS18205 0.64 -1.2 210,674 - EX31_RS18205 0.78 -0.8 210,747 + EX31_RS18205 0.84 +0.1 210,748 - EX31_RS18205 0.84 -0.6 210,748 - EX31_RS18205 0.84 +0.2 210,751 + EX31_RS18205 0.84 -1.7 210,751 + EX31_RS18205 0.84 -0.1 210,751 + EX31_RS18205 0.84 -0.2 210,751 + EX31_RS18205 0.84 -0.3 210,751 + EX31_RS18205 0.84 -0.7 210,751 + EX31_RS18205 0.84 -1.6 210,752 - EX31_RS18205 0.84 +0.3 210,756 - EX31_RS18205 0.84 -1.4 210,800 + EX31_RS18205 0.88 -0.2 210,801 - EX31_RS18205 0.88 +0.6 210,880 + -0.8 210,899 + -0.1 210,899 + +0.1 210,900 - -1.2 210,900 - +0.4 210,900 - -0.7 210,900 - -0.6 210,900 - -1.3 210,900 - -0.2 210,900 - +0.1 210,900 - +1.5 210,900 - -0.0 210,930 - +0.2 210,931 + -0.1 210,932 - -0.8 210,946 + +0.2 210,947 - -0.3 210,947 - +0.4 210,947 - +0.9 210,947 - -0.7 210,947 - -0.4 210,969 + -0.5 210,990 + +0.2 210,991 - -0.7 210,991 - -0.9 210,991 - +0.6 210,991 - +0.1 211,007 - -0.3 211,053 + -0.4 211,053 + -0.4 211,054 - +0.1 211,054 - +0.3 211,131 + EX31_RS18210 0.42 -0.6 211,132 - EX31_RS18210 0.42 +0.0 211,141 - EX31_RS18210 0.46 +0.2 211,155 + EX31_RS18210 0.53 +0.3 211,155 + EX31_RS18210 0.53 +0.3 211,156 - EX31_RS18210 0.54 -0.1 211,156 - EX31_RS18210 0.54 +0.2 211,156 - EX31_RS18210 0.54 +0.1 211,167 - EX31_RS18210 0.59 +0.0 211,222 - EX31_RS18210 0.85 +0.0 211,223 + EX31_RS18210 0.85 +1.1 211,224 - EX31_RS18210 0.85 -1.4 211,224 - EX31_RS18210 0.85 -0.2 211,231 - EX31_RS18210 0.89 -0.3 211,231 - EX31_RS18210 0.89 -0.6 211,231 - EX31_RS18210 0.89 -0.3 211,231 - EX31_RS18210 0.89 -0.2 211,231 - EX31_RS18210 0.89 -0.1 211,235 - +0.2 211,300 + -0.1 211,301 - -1.1 211,328 - -0.3 211,342 + +0.3 211,385 - -0.6 211,404 - -0.2 211,404 - +0.4 211,404 - +0.3 211,404 - +0.1 211,404 - +0.4 211,404 - -0.1 211,414 + -0.1 211,415 - -1.2 211,434 + +0.4 211,434 + +0.8 211,434 + -0.1 211,435 - -0.4 211,435 - -0.8 211,459 - -1.3 211,470 - +0.3 211,470 - +0.1 211,515 - -0.1 211,528 - +0.4 211,571 + EX31_RS18215 0.26 -1.4 211,571 + EX31_RS18215 0.26 +0.1 211,571 + EX31_RS18215 0.26 -0.2 211,572 - EX31_RS18215 0.27 -0.7 211,572 - EX31_RS18215 0.27 +0.0 211,572 - EX31_RS18215 0.27 -0.1 211,572 - EX31_RS18215 0.27 -0.3 211,572 - EX31_RS18215 0.27 +0.5 211,577 - EX31_RS18215 0.29 -0.1 211,577 - EX31_RS18215 0.29 -0.3 211,577 - EX31_RS18215 0.29 -0.6 211,577 - EX31_RS18215 0.29 +0.0 211,634 - EX31_RS18215 0.56 -0.6 211,639 + EX31_RS18215 0.59 -0.3 211,640 - EX31_RS18215 0.59 -0.3 211,640 - EX31_RS18215 0.59 +0.6 211,640 - EX31_RS18215 0.59 -0.1 211,640 - EX31_RS18215 0.59 -0.4 211,640 - EX31_RS18215 0.59 -0.2 211,640 - EX31_RS18215 0.59 +0.1 211,640 - EX31_RS18215 0.59 +0.2 211,702 - EX31_RS18215 0.89 -0.3 211,702 - EX31_RS18215 0.89 +0.9 211,725 + +0.3 211,726 - -0.4 211,726 - -0.4 211,726 - +0.4 211,730 - -0.3 211,780 - -0.1 211,792 + +0.5 211,793 - +0.0 211,793 - +0.1 211,793 - +1.2 211,793 - -0.5 211,793 - +0.1 211,793 - -0.2 211,793 - -0.8 211,793 - -0.2 211,796 + -0.1 211,796 + -0.6 211,796 + -0.3 211,797 - +0.1 211,797 - -0.1 211,797 - +0.4 211,809 + -0.0 211,810 - -1.6 211,810 - +0.6 211,810 - -1.6 211,810 - -0.3 211,810 - -0.3 211,849 + -1.4 211,850 - +0.3 211,877 - +1.3 211,877 - -1.4 211,885 - +0.3 211,885 - +0.1 211,885 - +0.3 211,885 - +0.1 211,888 + -0.4 211,889 - +0.1 211,889 - -0.1 211,889 - -0.2 211,889 - +0.1 211,889 - -0.4 211,889 - +0.2 211,889 - -0.0 211,889 - -0.6 211,889 - +0.8 211,889 - -0.5 211,889 - +0.6 211,926 + +0.9
Or see this region's nucleotide sequence