Strain Fitness in Rahnella sp. WP5 around EX31_RS08145

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
119,617	-		EX31_RS08140	0.46	-0.4
119,642	-		EX31_RS08140	0.48	-1.7
119,738	-		EX31_RS08140	0.55	-2.6
119,964	-		EX31_RS08140	0.70	-1.3
120,059	+		EX31_RS08140	0.77	-0.6
120,060	-		EX31_RS08140	0.77	+1.2
120,060	-		EX31_RS08140	0.77	+1.0
120,061	+		EX31_RS08140	0.77	-0.7
120,062	-		EX31_RS08140	0.77	-1.1
120,062	-		EX31_RS08140	0.77	-1.1
120,062	-		EX31_RS08140	0.77	+0.4
120,330	-				-1.8
120,330	-				-1.5
120,405	+				-2.0
120,406	-				-0.2
120,406	-				+0.4
120,406	-				+0.1
120,423	+				-0.4
120,424	-				+0.2
120,424	-				-0.7
120,424	-				+0.1
120,424	-				+0.3
120,424	-				+0.2
120,424	-				+0.7
120,440	+				-0.3
120,441	-				+0.7
120,441	-				+0.6
120,597	+				-0.9
120,597	+				-1.5
120,598	-				+0.8
120,598	-				-0.4
120,598	-				-0.0
120,598	-				-0.2
120,598	-				-0.4
120,598	-				+0.2
120,598	-				-1.4
120,598	-				+0.6
120,598	-				-0.5
120,598	-				+0.6
120,598	-				+0.2
120,673	+				-0.9
120,674	-				-1.1
120,726	+				-0.5
120,727	-				+0.4
120,727	-				-0.2
120,741	+				-0.8
120,797	-		EX31_RS08145	0.11	-0.5
120,813	+		EX31_RS08145	0.12	-1.0
120,813	+		EX31_RS08145	0.12	+0.4
120,813	+		EX31_RS08145	0.12	-0.2
120,813	+		EX31_RS08145	0.12	-1.9
120,813	+		EX31_RS08145	0.12	+0.5
120,814	-		EX31_RS08145	0.12	+0.1
120,814	-		EX31_RS08145	0.12	-0.4
120,814	-		EX31_RS08145	0.12	-0.4
120,845	-		EX31_RS08145	0.13	+1.0
120,898	+		EX31_RS08145	0.15	-0.9
120,928	-		EX31_RS08145	0.16	+0.3
120,988	-		EX31_RS08145	0.18	-0.3
121,062	+		EX31_RS08145	0.21	+0.4
121,082	-		EX31_RS08145	0.21	+0.1
121,082	-		EX31_RS08145	0.21	-1.8
121,094	+		EX31_RS08145	0.22	+0.3
121,095	-		EX31_RS08145	0.22	-0.7
121,302	+		EX31_RS08145	0.29	-0.5
121,307	+		EX31_RS08145	0.29	+0.2
121,308	-		EX31_RS08145	0.29	+0.6
121,308	-		EX31_RS08145	0.29	+0.6
121,365	+		EX31_RS08145	0.31	-0.3
121,365	+		EX31_RS08145	0.31	-0.4
121,366	-		EX31_RS08145	0.31	+0.2
121,366	-		EX31_RS08145	0.31	-0.7
121,370	+		EX31_RS08145	0.32	-0.5
121,370	+		EX31_RS08145	0.32	-0.4
121,370	+		EX31_RS08145	0.32	-0.8
121,370	+		EX31_RS08145	0.32	+0.2
121,371	-		EX31_RS08145	0.32	-0.2
121,371	-		EX31_RS08145	0.32	-0.5
121,371	-		EX31_RS08145	0.32	-0.0
121,371	-		EX31_RS08145	0.32	-0.3
121,447	+		EX31_RS08145	0.34	+0.2
121,448	-		EX31_RS08145	0.34	+0.3
121,457	+		EX31_RS08145	0.35	-0.5
121,527	+		EX31_RS08145	0.37	-0.5
121,551	+		EX31_RS08145	0.38	+0.1
121,587	-		EX31_RS08145	0.39	+0.5
121,587	-		EX31_RS08145	0.39	-0.1
121,643	+		EX31_RS08145	0.41	-0.6
121,665	+		EX31_RS08145	0.42	+0.2
121,684	+		EX31_RS08145	0.43	-0.7
121,686	+		EX31_RS08145	0.43	-0.7
121,686	+		EX31_RS08145	0.43	+0.3
121,686	+		EX31_RS08145	0.43	-0.2
121,686	+		EX31_RS08145	0.43	-0.1
121,686	+		EX31_RS08145	0.43	-0.6
121,686	+		EX31_RS08145	0.43	-0.3
121,686	+		EX31_RS08145	0.43	-0.1
121,686	+		EX31_RS08145	0.43	+0.1
121,686	+		EX31_RS08145	0.43	-0.3
121,686	+		EX31_RS08145	0.43	-1.2
121,686	+		EX31_RS08145	0.43	+0.1
121,686	+		EX31_RS08145	0.43	+0.1
121,686	+		EX31_RS08145	0.43	+0.4
121,686	+		EX31_RS08145	0.43	-0.6
121,686	+		EX31_RS08145	0.43	-0.7
121,686	+		EX31_RS08145	0.43	-0.0
121,686	+		EX31_RS08145	0.43	-0.2
121,686	+		EX31_RS08145	0.43	+1.0
121,687	-		EX31_RS08145	0.43	+0.4
121,687	-		EX31_RS08145	0.43	-0.5
121,687	-		EX31_RS08145	0.43	-0.1
121,687	-		EX31_RS08145	0.43	-0.6
121,687	-		EX31_RS08145	0.43	-0.1
121,687	-		EX31_RS08145	0.43	-0.2
121,687	-		EX31_RS08145	0.43	-0.9
121,687	-		EX31_RS08145	0.43	-2.1
121,687	-		EX31_RS08145	0.43	-0.4
121,687	-		EX31_RS08145	0.43	-0.7
121,687	-		EX31_RS08145	0.43	-0.3
121,693	+		EX31_RS08145	0.43	+0.1
121,693	+		EX31_RS08145	0.43	-0.7
121,693	+		EX31_RS08145	0.43	-0.4
121,693	+		EX31_RS08145	0.43	-0.3
121,693	+		EX31_RS08145	0.43	+2.0
121,694	-		EX31_RS08145	0.43	-0.6
121,694	-		EX31_RS08145	0.43	-0.4
121,705	+		EX31_RS08145	0.43	-0.7
121,705	+		EX31_RS08145	0.43	+0.5
121,755	+		EX31_RS08145	0.45	-0.1
121,755	+		EX31_RS08145	0.45	-0.7
121,755	+		EX31_RS08145	0.45	-1.7
121,760	-		EX31_RS08145	0.45	+0.1
121,760	-		EX31_RS08145	0.45	-1.1
121,760	-		EX31_RS08145	0.45	+0.7
121,760	-		EX31_RS08145	0.45	+0.1
121,760	-		EX31_RS08145	0.45	-0.5
121,760	-		EX31_RS08145	0.45	-0.0
121,835	+		EX31_RS08145	0.48	-0.2
121,835	+		EX31_RS08145	0.48	-0.2
121,835	+		EX31_RS08145	0.48	+0.1
121,835	+		EX31_RS08145	0.48	-2.9
121,836	-		EX31_RS08145	0.48	-0.1
121,836	-		EX31_RS08145	0.48	-0.6
121,836	-		EX31_RS08145	0.48	-0.6
121,836	-		EX31_RS08145	0.48	-0.7
121,836	-		EX31_RS08145	0.48	-0.7
121,836	-		EX31_RS08145	0.48	+0.0
121,836	-		EX31_RS08145	0.48	-0.3
121,864	-		EX31_RS08145	0.49	-0.5
121,865	+		EX31_RS08145	0.49	-0.8
121,865	+		EX31_RS08145	0.49	-0.2
121,866	-		EX31_RS08145	0.49	-0.0
121,944	-		EX31_RS08145	0.52	+0.1
122,076	+		EX31_RS08145	0.56	-0.0
122,077	-		EX31_RS08145	0.57	-0.0
122,077	-		EX31_RS08145	0.57	-0.1
122,077	-		EX31_RS08145	0.57	+0.3
122,077	-		EX31_RS08145	0.57	+0.2
122,147	+		EX31_RS08145	0.59	-0.8
122,187	+		EX31_RS08145	0.60	-0.1
122,187	+		EX31_RS08145	0.60	-0.2
122,187	+		EX31_RS08145	0.60	-0.7
122,188	-		EX31_RS08145	0.60	-0.1
122,188	-		EX31_RS08145	0.60	+0.5
122,195	-		EX31_RS08145	0.61	+0.2
122,207	+		EX31_RS08145	0.61	+0.3
122,312	+		EX31_RS08145	0.65	-1.7
122,313	-		EX31_RS08145	0.65	-0.0
122,313	-		EX31_RS08145	0.65	-0.0
122,323	+		EX31_RS08145	0.65	-0.6
122,323	+		EX31_RS08145	0.65	-0.2
122,324	-		EX31_RS08145	0.65	-0.5
122,416	+		EX31_RS08145	0.68	-0.4
122,448	+		EX31_RS08145	0.70	-0.3
122,449	-		EX31_RS08145	0.70	+0.1
122,541	+		EX31_RS08145	0.73	+0.2
122,542	-		EX31_RS08145	0.73	-0.1
122,572	-		EX31_RS08145	0.74	-0.1
122,574	+		EX31_RS08145	0.74	-0.1
122,574	+		EX31_RS08145	0.74	-0.4
122,575	-		EX31_RS08145	0.74	-1.6
122,575	-		EX31_RS08145	0.74	-0.1
122,575	-		EX31_RS08145	0.74	+0.0
122,575	-		EX31_RS08145	0.74	-0.6
122,651	+		EX31_RS08145	0.77	+0.2
122,652	-		EX31_RS08145	0.77	-0.4
122,652	-		EX31_RS08145	0.77	-0.2
122,652	-		EX31_RS08145	0.77	-0.6
122,652	-		EX31_RS08145	0.77	-0.2
122,652	-		EX31_RS08145	0.77	-0.4
122,652	-		EX31_RS08145	0.77	-0.9
122,652	-		EX31_RS08145	0.77	-0.2
122,878	+		EX31_RS08145	0.85	+0.1
122,905	-		EX31_RS08145	0.86	-0.3
123,020	-		EX31_RS08145	0.90	+0.2
123,038	+				-0.0
123,038	+				-0.6
123,038	+				-0.7
123,038	+				-1.1
123,039	-				+0.0
123,103	-				-0.3
123,183	-				-0.6
123,357	+				+2.3
123,357	+				-0.3
123,357	+				+0.4
123,358	-				-1.1
123,369	-				-0.1
123,487	-				+0.4
123,488	+				-0.2
123,489	-				+0.5
123,489	-				+0.3
123,489	-				+0.8
123,489	-				-0.5
123,489	-				-0.3
123,538	-		EX31_RS08150	0.13	-0.1
123,538	-		EX31_RS08150	0.13	+0.0
123,538	-		EX31_RS08150	0.13	-0.6
123,538	-		EX31_RS08150	0.13	-0.1
123,538	-		EX31_RS08150	0.13	+0.1
123,538	-		EX31_RS08150	0.13	-0.2
123,696	+		EX31_RS08150	0.25	+0.3
123,696	+		EX31_RS08150	0.25	+0.1
123,696	+		EX31_RS08150	0.25	+0.1
123,696	+		EX31_RS08150	0.25	-0.2
123,697	-		EX31_RS08150	0.25	-0.8
123,697	-		EX31_RS08150	0.25	+0.3
123,697	-		EX31_RS08150	0.25	+0.6
123,697	-		EX31_RS08150	0.25	+0.0
123,756	-		EX31_RS08150	0.30	-0.3
123,822	+		EX31_RS08150	0.35	-0.8
123,822	+		EX31_RS08150	0.35	-1.7
123,823	-		EX31_RS08150	0.35	-0.5
123,826	+		EX31_RS08150	0.35	-2.0
123,826	+		EX31_RS08150	0.35	-0.3
123,827	-		EX31_RS08150	0.35	-0.9
123,827	-		EX31_RS08150	0.35	-0.0
123,827	-		EX31_RS08150	0.35	-0.5
123,827	-		EX31_RS08150	0.35	+0.7
123,827	-		EX31_RS08150	0.35	-0.4
123,827	-		EX31_RS08150	0.35	+0.3
123,827	-		EX31_RS08150	0.35	-0.5
123,831	+		EX31_RS08150	0.35	+1.1
123,831	+		EX31_RS08150	0.35	+0.1
123,831	+		EX31_RS08150	0.35	-0.8
123,831	+		EX31_RS08150	0.35	-0.9
123,832	-		EX31_RS08150	0.36	-0.7
123,832	-		EX31_RS08150	0.36	+0.1
123,832	-		EX31_RS08150	0.36	-0.1
123,853	-		EX31_RS08150	0.37	-0.7
123,910	+		EX31_RS08150	0.42	+0.5
123,911	-		EX31_RS08150	0.42	-0.7
123,911	-		EX31_RS08150	0.42	-0.3
123,962	+		EX31_RS08150	0.45	+0.1
123,963	-		EX31_RS08150	0.46	-0.5
123,963	-		EX31_RS08150	0.46	+0.0
123,963	-		EX31_RS08150	0.46	-0.4
123,963	-		EX31_RS08150	0.46	-1.7
124,002	+		EX31_RS08150	0.49	-0.2
124,002	+		EX31_RS08150	0.49	+0.6
124,002	+		EX31_RS08150	0.49	-0.8
124,003	-		EX31_RS08150	0.49	+0.5
124,003	-		EX31_RS08150	0.49	-0.0
124,003	-		EX31_RS08150	0.49	-0.4
124,017	+		EX31_RS08150	0.50	+0.3
124,017	+		EX31_RS08150	0.50	+0.1
124,018	-		EX31_RS08150	0.50	-1.1
124,018	-		EX31_RS08150	0.50	-0.1
124,035	+		EX31_RS08150	0.51	-2.3
124,177	-		EX31_RS08150	0.62	-0.4
124,250	-		EX31_RS08150	0.68	-0.8
124,250	-		EX31_RS08150	0.68	-0.1