Strain Fitness in Rahnella sp. WP5 around EX31_RS03625

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03620 and EX31_RS03625 overlap by 7 nucleotidesEX31_RS03625 and EX31_RS03630 overlap by 4 nucleotides EX31_RS03620: EX31_RS03620 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 219,678 to 220,760 _RS03620 EX31_RS03625: EX31_RS03625 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 220,754 to 222,115 _RS03625 EX31_RS03630: EX31_RS03630 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 222,112 to 223,599 _RS03630 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -1 0 1at 220.788 kb on - strandat 220.788 kb on - strandat 220.788 kb on - strandat 220.788 kb on - strandat 220.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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220,788 - +0.2
220,788 - +0.3
220,788 - +0.4
220,788 - +0.2
220,788 - -0.6

Or see this region's nucleotide sequence