Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24540 and EX31_RS24545 are separated by 146 nucleotides EX31_RS24545 and EX31_RS24550 are separated by 73 nucleotides
EX31_RS24540: EX31_RS24540 - NAD-dependent protein deacylase, at 677,596 to 678,423
_RS24540
EX31_RS24545: EX31_RS24545 - peptidase T, at 678,570 to 679,805
_RS24545
EX31_RS24550: EX31_RS24550 - cupin domain-containing protein, at 679,879 to 681,000
_RS24550
Position (kb) 678
679
680 Strain fitness (log2 ratio) -1
0
1 at 677.668 kb on - strand at 677.763 kb on + strand, within EX31_RS24540 at 677.920 kb on + strand, within EX31_RS24540 at 677.920 kb on + strand, within EX31_RS24540 at 678.012 kb on - strand, within EX31_RS24540 at 678.024 kb on + strand, within EX31_RS24540 at 678.024 kb on + strand, within EX31_RS24540 at 678.024 kb on + strand, within EX31_RS24540 at 678.024 kb on + strand, within EX31_RS24540 at 678.042 kb on - strand, within EX31_RS24540 at 678.190 kb on + strand, within EX31_RS24540 at 678.190 kb on + strand, within EX31_RS24540 at 678.190 kb on + strand, within EX31_RS24540 at 678.440 kb on + strand at 678.478 kb on + strand at 678.478 kb on + strand at 678.478 kb on + strand at 678.478 kb on + strand at 678.479 kb on - strand at 678.479 kb on - strand at 678.479 kb on - strand at 678.542 kb on + strand at 678.575 kb on + strand at 678.575 kb on + strand at 678.575 kb on + strand at 678.575 kb on + strand at 678.576 kb on - strand at 678.600 kb on + strand at 678.601 kb on - strand at 678.601 kb on - strand at 678.623 kb on + strand at 678.687 kb on - strand at 678.928 kb on + strand, within EX31_RS24545 at 678.928 kb on + strand, within EX31_RS24545 at 678.929 kb on - strand, within EX31_RS24545 at 679.328 kb on + strand, within EX31_RS24545 at 679.399 kb on - strand, within EX31_RS24545 at 679.399 kb on - strand, within EX31_RS24545 at 679.497 kb on + strand, within EX31_RS24545 at 679.497 kb on + strand, within EX31_RS24545 at 679.498 kb on - strand, within EX31_RS24545 at 679.499 kb on + strand, within EX31_RS24545 at 679.499 kb on + strand, within EX31_RS24545 at 679.499 kb on + strand, within EX31_RS24545 at 679.524 kb on + strand, within EX31_RS24545 at 679.525 kb on - strand, within EX31_RS24545 at 679.525 kb on - strand, within EX31_RS24545 at 679.527 kb on + strand, within EX31_RS24545 at 679.527 kb on + strand, within EX31_RS24545 at 679.565 kb on + strand, within EX31_RS24545 at 679.697 kb on + strand at 679.697 kb on + strand at 679.697 kb on + strand at 679.698 kb on - strand at 679.698 kb on - strand at 679.698 kb on - strand at 679.760 kb on + strand at 679.766 kb on + strand at 680.046 kb on - strand, within EX31_RS24550 at 680.139 kb on - strand, within EX31_RS24550 at 680.188 kb on - strand, within EX31_RS24550 at 680.257 kb on - strand, within EX31_RS24550 at 680.409 kb on - strand, within EX31_RS24550 at 680.462 kb on + strand, within EX31_RS24550 at 680.463 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 677,668 - -0.4 677,763 + EX31_RS24540 0.20 -0.2 677,920 + EX31_RS24540 0.39 -0.0 677,920 + EX31_RS24540 0.39 +0.6 678,012 - EX31_RS24540 0.50 +1.3 678,024 + EX31_RS24540 0.52 +0.7 678,024 + EX31_RS24540 0.52 +0.5 678,024 + EX31_RS24540 0.52 -0.1 678,024 + EX31_RS24540 0.52 -0.4 678,042 - EX31_RS24540 0.54 +0.4 678,190 + EX31_RS24540 0.72 +0.1 678,190 + EX31_RS24540 0.72 +0.5 678,190 + EX31_RS24540 0.72 -0.2 678,440 + +0.8 678,478 + +0.5 678,478 + -1.1 678,478 + -0.5 678,478 + +0.5 678,479 - +0.1 678,479 - +0.8 678,479 - +0.5 678,542 + -0.8 678,575 + -0.2 678,575 + +0.1 678,575 + +0.1 678,575 + +1.4 678,576 - -0.7 678,600 + -0.1 678,601 - -0.1 678,601 - -1.7 678,623 + -0.5 678,687 - +0.6 678,928 + EX31_RS24545 0.29 -0.3 678,928 + EX31_RS24545 0.29 -0.7 678,929 - EX31_RS24545 0.29 +0.2 679,328 + EX31_RS24545 0.61 -0.4 679,399 - EX31_RS24545 0.67 -1.3 679,399 - EX31_RS24545 0.67 -0.9 679,497 + EX31_RS24545 0.75 -0.6 679,497 + EX31_RS24545 0.75 +0.0 679,498 - EX31_RS24545 0.75 -0.6 679,499 + EX31_RS24545 0.75 -1.6 679,499 + EX31_RS24545 0.75 +0.3 679,499 + EX31_RS24545 0.75 +0.0 679,524 + EX31_RS24545 0.77 -1.2 679,525 - EX31_RS24545 0.77 -1.5 679,525 - EX31_RS24545 0.77 -0.5 679,527 + EX31_RS24545 0.77 -1.0 679,527 + EX31_RS24545 0.77 -0.1 679,565 + EX31_RS24545 0.81 -1.0 679,697 + +0.1 679,697 + +0.5 679,697 + +0.7 679,698 - -0.6 679,698 - -0.5 679,698 - -1.0 679,760 + +0.1 679,766 + +0.2 680,046 - EX31_RS24550 0.15 -0.3 680,139 - EX31_RS24550 0.23 +0.3 680,188 - EX31_RS24550 0.28 -1.1 680,257 - EX31_RS24550 0.34 +0.8 680,409 - EX31_RS24550 0.47 -0.4 680,462 + EX31_RS24550 0.52 +0.1 680,463 - EX31_RS24550 0.52 -0.6 680,605 - EX31_RS24550 0.65 -1.5 680,605 - EX31_RS24550 0.65 +0.6 680,605 - EX31_RS24550 0.65 -0.6 680,605 - EX31_RS24550 0.65 +0.4 680,609 - EX31_RS24550 0.65 +0.5 680,609 - EX31_RS24550 0.65 -1.1 680,609 - EX31_RS24550 0.65 +0.1 680,609 - EX31_RS24550 0.65 +0.9
Or see this region's nucleotide sequence