Strain Fitness in Rahnella sp. WP5 around EX31_RS17475

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS17470 and EX31_RS17475 are separated by 349 nucleotidesEX31_RS17475 and EX31_RS17480 are separated by 39 nucleotides EX31_RS17470: EX31_RS17470 - nitrogen assimilation transcriptional regulator, at 46,017 to 46,943 _RS17470 EX31_RS17475: EX31_RS17475 - SDR family oxidoreductase, at 47,293 to 48,078 _RS17475 EX31_RS17480: EX31_RS17480 - GntR family transcriptional regulator, at 48,118 to 49,017 _RS17480 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1at 46.305 kb on + strand, within EX31_RS17470at 46.306 kb on - strand, within EX31_RS17470at 46.405 kb on + strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.445 kb on - strand, within EX31_RS17470at 46.445 kb on - strand, within EX31_RS17470at 46.536 kb on + strand, within EX31_RS17470at 46.537 kb on - strand, within EX31_RS17470at 46.573 kb on + strand, within EX31_RS17470at 46.758 kb on - strand, within EX31_RS17470at 46.760 kb on + strand, within EX31_RS17470at 46.760 kb on + strand, within EX31_RS17470at 46.921 kb on + strandat 46.921 kb on + strandat 46.921 kb on + strandat 46.922 kb on - strandat 46.990 kb on - strandat 46.990 kb on - strandat 46.997 kb on + strandat 46.998 kb on - strandat 46.998 kb on - strandat 47.003 kb on - strandat 47.003 kb on - strandat 47.030 kb on + strandat 47.089 kb on + strandat 47.115 kb on + strandat 47.119 kb on - strandat 47.179 kb on + strandat 47.210 kb on + strandat 47.212 kb on + strandat 47.212 kb on + strandat 47.212 kb on + strandat 47.212 kb on + strandat 47.212 kb on + strandat 47.213 kb on - strandat 47.213 kb on - strandat 47.213 kb on - strandat 47.240 kb on - strandat 47.242 kb on + strandat 47.294 kb on + strandat 47.295 kb on - strandat 47.296 kb on + strandat 47.345 kb on + strandat 47.345 kb on + strandat 47.346 kb on - strandat 47.346 kb on - strandat 47.346 kb on - strandat 47.346 kb on - strandat 47.346 kb on - strandat 47.444 kb on - strand, within EX31_RS17475at 47.607 kb on + strand, within EX31_RS17475at 47.608 kb on - strand, within EX31_RS17475at 47.661 kb on + strand, within EX31_RS17475at 47.661 kb on + strand, within EX31_RS17475at 47.662 kb on - strand, within EX31_RS17475at 47.665 kb on - strand, within EX31_RS17475at 47.665 kb on - strand, within EX31_RS17475at 48.096 kb on + strandat 48.097 kb on - strandat 48.097 kb on - strandat 48.100 kb on + strandat 48.101 kb on - strandat 48.101 kb on - strandat 48.101 kb on - strandat 48.142 kb on - strandat 48.155 kb on + strandat 48.276 kb on - strand, within EX31_RS17480at 48.276 kb on - strand, within EX31_RS17480at 48.276 kb on - strand, within EX31_RS17480at 48.276 kb on - strand, within EX31_RS17480at 48.340 kb on - strand, within EX31_RS17480at 48.340 kb on - strand, within EX31_RS17480at 48.430 kb on - strand, within EX31_RS17480at 48.437 kb on + strand, within EX31_RS17480at 48.441 kb on + strand, within EX31_RS17480at 48.441 kb on + strand, within EX31_RS17480at 48.442 kb on - strand, within EX31_RS17480at 48.442 kb on - strand, within EX31_RS17480at 48.442 kb on - strand, within EX31_RS17480at 48.442 kb on - strand, within EX31_RS17480at 48.442 kb on - strand, within EX31_RS17480at 48.442 kb on - strand, within EX31_RS17480at 48.541 kb on - strand, within EX31_RS17480at 48.551 kb on - strand, within EX31_RS17480at 48.551 kb on - strand, within EX31_RS17480at 48.572 kb on - strand, within EX31_RS17480at 48.665 kb on + strand, within EX31_RS17480at 48.741 kb on - strand, within EX31_RS17480at 48.743 kb on - strand, within EX31_RS17480at 48.743 kb on - strand, within EX31_RS17480at 48.769 kb on - strand, within EX31_RS17480at 48.769 kb on - strand, within EX31_RS17480at 48.848 kb on - strand, within EX31_RS17480at 48.848 kb on - strand, within EX31_RS17480at 48.860 kb on - strand, within EX31_RS17480at 48.873 kb on + strand, within EX31_RS17480at 48.873 kb on + strand, within EX31_RS17480at 48.904 kb on - strand, within EX31_RS17480at 49.006 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
46,305 + EX31_RS17470 0.31 -1.0
46,306 - EX31_RS17470 0.31 +0.1
46,405 + EX31_RS17470 0.42 -0.1
46,406 - EX31_RS17470 0.42 -0.2
46,406 - EX31_RS17470 0.42 +0.2
46,406 - EX31_RS17470 0.42 -0.2
46,406 - EX31_RS17470 0.42 +0.5
46,406 - EX31_RS17470 0.42 +0.8
46,445 - EX31_RS17470 0.46 -0.1
46,445 - EX31_RS17470 0.46 -0.7
46,536 + EX31_RS17470 0.56 -2.1
46,537 - EX31_RS17470 0.56 -0.4
46,573 + EX31_RS17470 0.60 +0.5
46,758 - EX31_RS17470 0.80 -0.2
46,760 + EX31_RS17470 0.80 -0.5
46,760 + EX31_RS17470 0.80 -0.5
46,921 + -0.9
46,921 + -0.0
46,921 + -0.9
46,922 - +0.0
46,990 - -0.0
46,990 - -1.3
46,997 + -0.7
46,998 - -0.0
46,998 - -0.2
47,003 - +0.8
47,003 - +0.8
47,030 + -0.9
47,089 + -0.5
47,115 + -0.7
47,119 - +0.0
47,179 + -1.0
47,210 + +0.1
47,212 + +0.5
47,212 + -0.8
47,212 + +0.5
47,212 + -1.9
47,212 + -0.5
47,213 - -1.0
47,213 - +0.3
47,213 - -0.6
47,240 - +0.4
47,242 + +1.5
47,294 + -0.3
47,295 - -1.6
47,296 + +0.5
47,345 + +0.3
47,345 + -0.2
47,346 - +0.2
47,346 - +0.3
47,346 - -0.2
47,346 - +0.1
47,346 - +0.9
47,444 - EX31_RS17475 0.19 -0.9
47,607 + EX31_RS17475 0.40 -0.0
47,608 - EX31_RS17475 0.40 -1.9
47,661 + EX31_RS17475 0.47 -1.5
47,661 + EX31_RS17475 0.47 -0.8
47,662 - EX31_RS17475 0.47 -1.5
47,665 - EX31_RS17475 0.47 -1.0
47,665 - EX31_RS17475 0.47 -0.5
48,096 + -1.0
48,097 - -0.1
48,097 - +0.2
48,100 + -0.8
48,101 - -0.5
48,101 - -0.3
48,101 - +0.4
48,142 - +1.0
48,155 + +0.9
48,276 - EX31_RS17480 0.18 +1.1
48,276 - EX31_RS17480 0.18 -0.3
48,276 - EX31_RS17480 0.18 -2.6
48,276 - EX31_RS17480 0.18 -0.1
48,340 - EX31_RS17480 0.25 -0.2
48,340 - EX31_RS17480 0.25 +0.6
48,430 - EX31_RS17480 0.35 +0.3
48,437 + EX31_RS17480 0.35 +0.3
48,441 + EX31_RS17480 0.36 -1.8
48,441 + EX31_RS17480 0.36 +0.5
48,442 - EX31_RS17480 0.36 -0.1
48,442 - EX31_RS17480 0.36 -0.9
48,442 - EX31_RS17480 0.36 -0.4
48,442 - EX31_RS17480 0.36 +0.3
48,442 - EX31_RS17480 0.36 +0.2
48,442 - EX31_RS17480 0.36 +0.1
48,541 - EX31_RS17480 0.47 -0.7
48,551 - EX31_RS17480 0.48 -0.2
48,551 - EX31_RS17480 0.48 -0.4
48,572 - EX31_RS17480 0.50 +0.1
48,665 + EX31_RS17480 0.61 +0.6
48,741 - EX31_RS17480 0.69 -0.6
48,743 - EX31_RS17480 0.69 -0.7
48,743 - EX31_RS17480 0.69 +0.5
48,769 - EX31_RS17480 0.72 +0.0
48,769 - EX31_RS17480 0.72 +0.0
48,848 - EX31_RS17480 0.81 +0.5
48,848 - EX31_RS17480 0.81 +0.3
48,860 - EX31_RS17480 0.82 -0.5
48,873 + EX31_RS17480 0.84 -0.0
48,873 + EX31_RS17480 0.84 -1.2
48,904 - EX31_RS17480 0.87 +1.0
49,006 - -0.8

Or see this region's nucleotide sequence