Strain Fitness in Rahnella sp. WP5 around EX31_RS16910

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
9,646	+		EX31_RS16905	0.26	+0.3
9,646	+		EX31_RS16905	0.26	-0.3
9,646	+		EX31_RS16905	0.26	-0.4
9,646	+		EX31_RS16905	0.26	-0.6
9,646	+		EX31_RS16905	0.26	-0.3
9,646	+		EX31_RS16905	0.26	+0.2
9,646	+		EX31_RS16905	0.26	+0.1
9,646	+		EX31_RS16905	0.26	-0.3
9,646	+		EX31_RS16905	0.26	-2.0
9,646	+		EX31_RS16905	0.26	-0.4
9,646	+		EX31_RS16905	0.26	-0.6
9,646	+		EX31_RS16905	0.26	+1.3
9,647	-		EX31_RS16905	0.26	+0.2
9,647	-		EX31_RS16905	0.26	-1.0
9,647	-		EX31_RS16905	0.26	+0.8
9,647	-		EX31_RS16905	0.26	-1.1
9,647	-		EX31_RS16905	0.26	+0.8
9,649	+		EX31_RS16905	0.27	-0.3
9,649	+		EX31_RS16905	0.27	-0.1
9,649	+		EX31_RS16905	0.27	-0.5
9,649	+		EX31_RS16905	0.27	+1.0
9,650	-		EX31_RS16905	0.27	+0.1
9,770	+		EX31_RS16905	0.37	-0.1
9,786	+		EX31_RS16905	0.38	-0.3
9,786	+		EX31_RS16905	0.38	+0.1
9,806	+		EX31_RS16905	0.40	-0.7
9,837	+		EX31_RS16905	0.42	+0.5
9,837	+		EX31_RS16905	0.42	+0.2
9,838	-		EX31_RS16905	0.42	+0.8
9,930	+		EX31_RS16905	0.50	-0.6
9,930	+		EX31_RS16905	0.50	-0.2
9,930	+		EX31_RS16905	0.50	-0.2
9,930	+		EX31_RS16905	0.50	+0.1
9,944	+		EX31_RS16905	0.51	-1.1
9,945	-		EX31_RS16905	0.51	-1.1
9,945	-		EX31_RS16905	0.51	+0.2
10,036	+		EX31_RS16905	0.59	+0.3
10,036	+		EX31_RS16905	0.59	+0.1
10,036	+		EX31_RS16905	0.59	-0.0
10,037	-		EX31_RS16905	0.59	-0.8
10,037	-		EX31_RS16905	0.59	-0.8
10,037	-		EX31_RS16905	0.59	-2.3
10,037	-		EX31_RS16905	0.59	-0.3
10,037	-		EX31_RS16905	0.59	+0.5
10,037	-		EX31_RS16905	0.59	+0.6
10,047	+		EX31_RS16905	0.60	-0.1
10,163	+		EX31_RS16905	0.70	-0.0
10,164	-		EX31_RS16905	0.70	+0.0
10,164	-		EX31_RS16905	0.70	-0.4
10,164	-		EX31_RS16905	0.70	-0.2
10,167	+		EX31_RS16905	0.70	-0.6
10,167	+		EX31_RS16905	0.70	-1.5
10,167	+		EX31_RS16905	0.70	-0.1
10,167	+		EX31_RS16905	0.70	-0.1
10,167	+		EX31_RS16905	0.70	+0.5
10,168	-		EX31_RS16905	0.70	-0.0
10,168	-		EX31_RS16905	0.70	+0.9
10,168	-		EX31_RS16905	0.70	-0.2
10,168	-		EX31_RS16905	0.70	+0.8
10,168	-		EX31_RS16905	0.70	+0.2
10,168	-		EX31_RS16905	0.70	+0.1
10,168	-		EX31_RS16905	0.70	-0.3
10,168	-		EX31_RS16905	0.70	+0.5
10,168	-		EX31_RS16905	0.70	-0.1
10,168	-		EX31_RS16905	0.70	+0.1
10,168	-		EX31_RS16905	0.70	+0.1
10,172	+		EX31_RS16905	0.70	-0.7
10,172	+		EX31_RS16905	0.70	+0.4
10,172	+		EX31_RS16905	0.70	+0.7
10,172	+		EX31_RS16905	0.70	+0.5
10,172	+		EX31_RS16905	0.70	-0.3
10,172	+		EX31_RS16905	0.70	+0.6
10,172	+		EX31_RS16905	0.70	-0.6
10,172	+		EX31_RS16905	0.70	-0.9
10,175	+		EX31_RS16905	0.71	+1.5
10,175	+		EX31_RS16905	0.71	+0.1
10,175	+		EX31_RS16905	0.71	-0.4
10,175	+		EX31_RS16905	0.71	+0.6
10,175	+		EX31_RS16905	0.71	+0.1
10,175	+		EX31_RS16905	0.71	-0.3
10,175	+		EX31_RS16905	0.71	-0.8
10,176	-		EX31_RS16905	0.71	-1.3
10,176	-		EX31_RS16905	0.71	-0.4
10,176	-		EX31_RS16905	0.71	+0.2
10,176	-		EX31_RS16905	0.71	-1.6
10,176	-		EX31_RS16905	0.71	-0.4
10,176	-		EX31_RS16905	0.71	+1.6
10,190	+		EX31_RS16905	0.72	+0.6
10,191	-		EX31_RS16905	0.72	+0.1
10,202	+		EX31_RS16905	0.73	-1.0
10,202	+		EX31_RS16905	0.73	-0.4
10,202	+		EX31_RS16905	0.73	+0.3
10,202	+		EX31_RS16905	0.73	-0.3
10,202	+		EX31_RS16905	0.73	+0.0
10,203	-		EX31_RS16905	0.73	+0.8
10,203	-		EX31_RS16905	0.73	-2.0
10,203	-		EX31_RS16905	0.73	-0.6
10,207	-		EX31_RS16905	0.73	-0.4
10,207	-		EX31_RS16905	0.73	+0.1
10,207	-		EX31_RS16905	0.73	+2.2
10,207	-		EX31_RS16905	0.73	-0.6
10,231	-		EX31_RS16905	0.75	+0.7
10,286	+		EX31_RS16905	0.80	+1.1
10,298	+		EX31_RS16905	0.81	-0.1
10,299	-		EX31_RS16905	0.81	+1.1
10,304	+		EX31_RS16905	0.81	+0.2
10,304	+		EX31_RS16905	0.81	-0.7
10,304	+		EX31_RS16905	0.81	+0.3
10,305	-		EX31_RS16905	0.81	+0.5
10,305	-		EX31_RS16905	0.81	+0.1
10,305	-		EX31_RS16905	0.81	+2.8
10,305	-		EX31_RS16905	0.81	-0.2
10,305	-		EX31_RS16905	0.81	+0.9
10,444	+				-1.3
10,444	+				-1.2
10,444	+				+0.2
10,444	+				-0.6
10,445	-				+0.9
10,445	-				+1.4
10,445	-				-0.2
10,445	-				-1.1
10,484	-				-0.4
10,525	+				+0.6
10,525	+				-0.7
10,525	+				-0.1
10,526	-				+0.2
10,526	-				+0.8
10,526	-				-1.0
10,556	+				-1.7
10,556	+				-1.8
10,557	-				+0.1
10,557	-				+0.6
10,564	+				+0.2
10,564	+				+0.3
10,565	-				-0.9
10,612	+				+1.6
10,612	+				-0.1
10,612	+				+0.3
10,612	+				-0.2
10,612	+				+0.5
10,612	+				-0.5
10,612	+				-1.7
10,613	-				+0.5
10,613	-				+0.8
10,613	-				-0.1
10,613	-				-0.8
10,613	-				+0.0
10,613	-				+0.2
10,620	-				+0.1
10,620	-				-0.7
10,655	+				+0.3
10,655	+				-0.4
10,655	+				+0.6
10,656	-				+1.1
10,656	-				-0.4
10,656	-				-0.6
10,656	-				-0.4
10,656	-				+0.1
10,713	+				+0.7
10,715	+				-1.0
10,715	+				+0.6
10,715	+				-0.6
10,715	+				+0.8
10,715	+				-0.0
10,715	+				-0.6
10,716	-				+2.0
10,716	-				+0.8
10,716	-				+1.5
10,716	-				+0.4
10,723	+				+0.1
10,723	+				+0.7
10,723	+				-0.1
10,723	+				+0.6
10,723	+				-0.9
10,723	+				-1.6
10,723	+				+1.2
10,723	+				-0.0
10,723	+				+2.1
10,723	+				+0.3
10,723	+				-0.2
10,723	+				+0.1
10,723	+				+0.2
10,723	+				+0.9
10,723	+				+0.8
10,723	+				+1.1
10,723	+				+0.6
10,723	+				-0.4
10,723	+				+1.0
10,723	+				+0.1
10,723	+				+0.8
10,723	+				-0.0
10,724	-				+0.6
10,724	-				+0.3
10,724	-				-0.2
10,724	-				+0.5
10,724	-				+0.1
10,724	-				-0.1
10,724	-				-0.1
10,724	-				+0.2
10,724	-				-0.2
10,724	-				-2.1
10,724	-				-0.3
10,724	-				+0.4
10,724	-				-1.2
10,726	+				+0.8
10,726	+				+0.5
10,726	+				-0.6
10,727	-				-0.8
10,727	-				-1.6
10,727	-				+0.9
10,727	-				+0.5
10,727	-				-0.5
10,764	-		EX31_RS16910	0.12	+0.6
10,857	+		EX31_RS16910	0.20	-0.1
10,857	+		EX31_RS16910	0.20	-0.5
10,858	-		EX31_RS16910	0.20	+0.1
10,891	+		EX31_RS16910	0.23	+0.2
10,891	+		EX31_RS16910	0.23	-0.6
10,892	-		EX31_RS16910	0.23	+0.1
10,892	-		EX31_RS16910	0.23	-0.2
10,935	+		EX31_RS16910	0.26	-0.0
10,936	-		EX31_RS16910	0.27	-0.3
10,936	-		EX31_RS16910	0.27	-0.1
10,942	+		EX31_RS16910	0.27	-0.2
10,943	-		EX31_RS16910	0.27	-0.4
10,951	+		EX31_RS16910	0.28	-0.1
10,952	-		EX31_RS16910	0.28	-0.2
11,033	+		EX31_RS16910	0.35	-0.5
11,033	+		EX31_RS16910	0.35	-0.5
11,033	+		EX31_RS16910	0.35	+1.0
11,034	-		EX31_RS16910	0.35	+0.7
11,034	-		EX31_RS16910	0.35	+0.4
11,034	-		EX31_RS16910	0.35	-0.5
11,079	+		EX31_RS16910	0.38	-0.2
11,080	-		EX31_RS16910	0.39	-0.1
11,080	-		EX31_RS16910	0.39	-0.4
11,080	-		EX31_RS16910	0.39	-0.4
11,080	-		EX31_RS16910	0.39	+0.1
11,080	-		EX31_RS16910	0.39	-0.1
11,080	-		EX31_RS16910	0.39	-0.9
11,106	+		EX31_RS16910	0.41	-0.0
11,107	-		EX31_RS16910	0.41	-0.5
11,107	-		EX31_RS16910	0.41	-1.8
11,114	+		EX31_RS16910	0.41	+0.3
11,115	-		EX31_RS16910	0.41	+0.7
11,115	-		EX31_RS16910	0.41	+1.7
11,115	-		EX31_RS16910	0.41	-0.1
11,139	+		EX31_RS16910	0.43	+0.4
11,139	+		EX31_RS16910	0.43	+1.6
11,139	+		EX31_RS16910	0.43	-0.5
11,140	-		EX31_RS16910	0.43	-0.9
11,140	-		EX31_RS16910	0.43	+0.3
11,140	-		EX31_RS16910	0.43	-1.3
11,140	-		EX31_RS16910	0.43	-0.9
11,242	+		EX31_RS16910	0.52	+0.4
11,242	+		EX31_RS16910	0.52	+0.0
11,242	+		EX31_RS16910	0.52	-0.9
11,243	-		EX31_RS16910	0.52	+0.7
11,243	-		EX31_RS16910	0.52	+0.9
11,243	-		EX31_RS16910	0.52	+0.4
11,243	-		EX31_RS16910	0.52	-0.4
11,243	-		EX31_RS16910	0.52	+0.7
11,243	-		EX31_RS16910	0.52	-0.6
11,243	-		EX31_RS16910	0.52	+0.5
11,278	+		EX31_RS16910	0.55	+0.5
11,278	+		EX31_RS16910	0.55	-0.7
11,278	+		EX31_RS16910	0.55	+0.4
11,278	+		EX31_RS16910	0.55	+0.3
11,278	+		EX31_RS16910	0.55	+0.7
11,279	-		EX31_RS16910	0.55	+0.2
11,279	-		EX31_RS16910	0.55	-0.2
11,279	-		EX31_RS16910	0.55	+0.1
11,279	-		EX31_RS16910	0.55	+0.1
11,279	-		EX31_RS16910	0.55	-0.3
11,279	-		EX31_RS16910	0.55	-0.0
11,279	-		EX31_RS16910	0.55	+0.4
11,280	+		EX31_RS16910	0.55	+0.2
11,280	+		EX31_RS16910	0.55	+0.5
11,290	-		EX31_RS16910	0.56	+0.5
11,354	-		EX31_RS16910	0.61	-0.6
11,354	-		EX31_RS16910	0.61	+0.6
11,354	-		EX31_RS16910	0.61	-0.4
11,384	+		EX31_RS16910	0.64	+0.1
11,384	+		EX31_RS16910	0.64	-0.2
11,384	+		EX31_RS16910	0.64	-0.1
11,385	-		EX31_RS16910	0.64	-0.3
11,385	-		EX31_RS16910	0.64	-0.1
11,385	-		EX31_RS16910	0.64	+0.6
11,392	+		EX31_RS16910	0.65	-0.4
11,428	+		EX31_RS16910	0.68	+0.0
11,429	-		EX31_RS16910	0.68	+0.2
11,462	-		EX31_RS16910	0.70	-0.9
11,462	-		EX31_RS16910	0.70	+0.2
11,534	-		EX31_RS16910	0.76	+0.0
11,538	+		EX31_RS16910	0.77	-0.2
11,538	+		EX31_RS16910	0.77	-0.9
11,542	+		EX31_RS16910	0.77	-0.4
11,543	-		EX31_RS16910	0.77	+0.5
11,543	-		EX31_RS16910	0.77	+0.1
11,543	-		EX31_RS16910	0.77	-0.3
11,543	-		EX31_RS16910	0.77	+0.6
11,558	-		EX31_RS16910	0.78	-0.8
11,579	-		EX31_RS16910	0.80	+0.2
11,579	-		EX31_RS16910	0.80	+1.1
11,630	-		EX31_RS16910	0.84	+1.2
11,648	-		EX31_RS16910	0.86	+0.1
11,655	+		EX31_RS16910	0.86	+0.7
11,657	+		EX31_RS16910	0.87	+1.0
11,657	+		EX31_RS16910	0.87	+0.4
11,657	+		EX31_RS16910	0.87	+1.1
11,657	+		EX31_RS16910	0.87	+0.4
11,657	+		EX31_RS16910	0.87	+0.9
11,657	+		EX31_RS16910	0.87	-0.8
11,657	+		EX31_RS16910	0.87	+0.1
11,658	-		EX31_RS16910	0.87	-0.7
11,658	-		EX31_RS16910	0.87	-0.2
11,658	-		EX31_RS16910	0.87	+0.2
11,658	-		EX31_RS16910	0.87	+0.4
11,658	-		EX31_RS16910	0.87	-0.3
11,658	-		EX31_RS16910	0.87	+0.3
11,658	-		EX31_RS16910	0.87	+0.2
11,658	-		EX31_RS16910	0.87	+0.0
11,658	-		EX31_RS16910	0.87	+0.5
11,668	+		EX31_RS16910	0.88	+0.1
11,668	+		EX31_RS16910	0.88	-0.4
11,716	+				+0.5
11,717	-				-0.4
11,717	-				+0.3
11,734	-				-0.3
11,734	-				-1.8
11,734	-				+0.9
11,742	+				+0.2
11,743	-				+0.8
11,743	-				-0.7
11,751	+				-0.2
11,751	+				-0.6
11,751	+				+0.4
11,752	-				+0.8
11,773	+				-0.0
11,774	-				+0.4
11,800	-				-0.1
11,800	-				+0.3
11,800	-				+0.3
11,806	+				-0.9
11,807	-				+0.4
11,808	+				+1.4
11,809	-				-0.2
11,809	-				+0.1
11,809	-				+0.9
11,809	-				+0.3
11,817	+				-2.1
11,817	+				+1.6
11,817	+				+0.0
11,817	+				-1.0
11,817	+				+0.3
11,817	+				+0.1
11,817	+				-0.1
11,818	-				+0.5
11,818	-				+0.8
11,818	-				-0.1
11,818	-				+1.9
11,818	-				+0.7
11,818	-				-0.1
11,818	-				-0.2
11,818	-				+1.1
11,818	-				+0.6
11,818	-				+0.0
11,818	-				+0.6
11,818	-				+0.6
11,818	-				+0.0
11,818	-				+0.0
11,818	-				+0.2
11,818	-				+0.6
11,818	-				+0.1
11,818	-				+0.8
11,818	-				-1.2
11,818	-				+0.3
11,818	-				+0.2
11,818	-				+0.8
11,818	-				-0.3
11,818	-				+0.2
11,818	-				-0.5
11,818	-				-2.5
11,818	-				+0.5
11,821	-				+0.3
11,821	-				+0.3
11,821	-				-2.2
11,821	-				-0.0
11,821	-				+1.1
11,821	-				+0.1
11,821	-				+0.4
11,821	-				+0.7
11,821	-				-1.2
11,821	-				+0.3
11,821	-				+0.6
11,821	-				-0.3
11,834	-				-0.2
11,834	-				+0.3
11,837	+				-0.2
11,837	+				-0.2
11,837	+				+0.5
11,837	+				+1.7
11,838	-				+0.5
11,838	-				+0.2
11,838	-				+0.1
11,850	+				-0.2
11,850	+				-0.5
11,851	-				+0.9
11,851	-				+0.5
11,851	-				+1.1
11,859	-				+0.4
11,859	-				-0.2
11,859	-				-0.2
11,859	-				-0.0
11,859	-				-0.1
11,859	-				-0.0
11,859	-				+1.2
11,928	+				+0.8
11,928	+				+0.7
11,928	+				-0.2
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