Strain Fitness in Rahnella sp. WP5 around EX31_RS16905

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
8,345	+				-0.4
8,345	+				+0.4
8,345	+				-0.7
8,345	+				-0.1
8,345	+				-0.6
8,345	+				-0.1
8,345	+				-0.2
8,346	-				+1.5
8,346	-				-2.5
8,346	-				-1.1
8,346	-				+0.1
8,346	-				+0.3
8,346	-				+0.7
8,346	-				-1.1
8,347	+				-0.8
8,347	+				-0.3
8,348	-				-1.0
8,348	-				-0.9
8,348	-				-0.1
8,348	-				-0.3
8,348	-				-0.4
8,348	-				+0.0
8,348	-				+0.0
8,348	-				+1.2
8,348	-				-0.1
8,348	-				-0.5
8,348	-				+0.1
8,348	-				-0.2
8,348	-				-0.5
8,384	-				-0.2
8,453	+		EX31_RS16900	0.18	+0.0
8,521	-		EX31_RS16900	0.26	-0.1
8,535	+		EX31_RS16900	0.28	-1.2
8,659	-		EX31_RS16900	0.42	-2.0
8,659	-		EX31_RS16900	0.42	-1.0
8,659	-		EX31_RS16900	0.42	-1.0
8,736	-		EX31_RS16900	0.52	-1.4
8,749	-		EX31_RS16900	0.53	-0.4
8,749	-		EX31_RS16900	0.53	-0.1
8,815	+		EX31_RS16900	0.61	-2.4
8,815	+		EX31_RS16900	0.61	-1.0
8,816	-		EX31_RS16900	0.61	-0.1
8,853	+		EX31_RS16900	0.65	-0.4
8,853	+		EX31_RS16900	0.65	+1.6
8,854	-		EX31_RS16900	0.66	+0.1
8,854	-		EX31_RS16900	0.66	-0.2
8,901	-		EX31_RS16900	0.71	+0.4
8,901	-		EX31_RS16900	0.71	-0.8
9,036	+		EX31_RS16900	0.87	-0.1
9,036	+		EX31_RS16900	0.87	-0.3
9,037	-		EX31_RS16900	0.87	-0.1
9,037	-		EX31_RS16900	0.87	+0.7
9,037	-		EX31_RS16900	0.87	-0.5
9,037	-		EX31_RS16900	0.87	-0.5
9,106	+				-0.7
9,106	+				+0.1
9,107	-				+1.0
9,107	-				+0.5
9,107	-				-0.7
9,107	-				+0.6
9,129	-				-0.5
9,129	-				-0.0
9,142	+				+0.0
9,142	+				-1.4
9,142	+				+0.4
9,142	+				+0.3
9,142	+				-0.1
9,142	+				-0.6
9,142	+				-0.0
9,142	+				+0.5
9,142	+				+0.6
9,142	+				+0.2
9,142	+				+0.6
9,142	+				-0.2
9,142	+				+0.5
9,142	+				-0.0
9,142	+				-0.4
9,143	-				-0.7
9,143	-				-0.1
9,143	-				-1.6
9,143	-				+1.2
9,143	-				-1.0
9,143	-				+0.4
9,143	-				+0.2
9,143	-				+0.5
9,160	-				+0.6
9,173	+				-0.1
9,202	-				-0.1
9,206	+				+0.3
9,248	+				+0.2
9,248	+				+0.7
9,249	-				-0.7
9,267	+				+0.5
9,267	+				-0.6
9,268	-				-0.5
9,268	-				+0.1
9,280	+				-1.4
9,280	+				+0.2
9,280	+				-0.9
9,280	+				-1.1
9,280	+				+0.1
9,281	-				+0.0
9,281	-				-0.8
9,281	-				+0.1
9,281	-				-0.6
9,282	+				+0.3
9,283	-				+1.2
9,299	+				-0.2
9,300	-				-0.9
9,323	+				+0.1
9,324	-				+0.3
9,324	-				+1.4
9,330	+				+0.2
9,330	+				-0.5
9,331	-				-0.2
9,342	+				+0.4
9,362	+				-0.3
9,362	+				-0.1
9,362	+				+0.6
9,362	+				-0.4
9,362	+				-0.2
9,363	-				-0.1
9,363	-				+0.2
9,439	-				+0.6
9,474	+		EX31_RS16905	0.12	-0.4
9,474	+		EX31_RS16905	0.12	-0.2
9,474	+		EX31_RS16905	0.12	+0.2
9,474	+		EX31_RS16905	0.12	+0.6
9,475	-		EX31_RS16905	0.12	+0.5
9,475	-		EX31_RS16905	0.12	-1.2
9,475	-		EX31_RS16905	0.12	-1.6
9,475	-		EX31_RS16905	0.12	+0.0
9,475	-		EX31_RS16905	0.12	-1.0
9,475	-		EX31_RS16905	0.12	-1.2
9,477	+		EX31_RS16905	0.12	-0.1
9,477	+		EX31_RS16905	0.12	-0.8
9,478	-		EX31_RS16905	0.12	+0.2
9,514	+		EX31_RS16905	0.15	+0.2
9,514	+		EX31_RS16905	0.15	-0.1
9,515	-		EX31_RS16905	0.15	-0.9
9,530	+		EX31_RS16905	0.17	+0.1
9,531	-		EX31_RS16905	0.17	-0.3
9,587	+		EX31_RS16905	0.21	-1.0
9,587	+		EX31_RS16905	0.21	-1.7
9,588	-		EX31_RS16905	0.21	+0.0
9,646	+		EX31_RS16905	0.26	+0.3
9,646	+		EX31_RS16905	0.26	-0.3
9,646	+		EX31_RS16905	0.26	-0.4
9,646	+		EX31_RS16905	0.26	-0.6
9,646	+		EX31_RS16905	0.26	-0.3
9,646	+		EX31_RS16905	0.26	+0.2
9,646	+		EX31_RS16905	0.26	+0.1
9,646	+		EX31_RS16905	0.26	-0.3
9,646	+		EX31_RS16905	0.26	-2.0
9,646	+		EX31_RS16905	0.26	-0.4
9,646	+		EX31_RS16905	0.26	-0.6
9,646	+		EX31_RS16905	0.26	+1.3
9,647	-		EX31_RS16905	0.26	+0.2
9,647	-		EX31_RS16905	0.26	-1.0
9,647	-		EX31_RS16905	0.26	+0.8
9,647	-		EX31_RS16905	0.26	-1.1
9,647	-		EX31_RS16905	0.26	+0.8
9,649	+		EX31_RS16905	0.27	-0.3
9,649	+		EX31_RS16905	0.27	-0.1
9,649	+		EX31_RS16905	0.27	-0.5
9,649	+		EX31_RS16905	0.27	+1.0
9,650	-		EX31_RS16905	0.27	+0.1
9,770	+		EX31_RS16905	0.37	-0.1
9,786	+		EX31_RS16905	0.38	-0.3
9,786	+		EX31_RS16905	0.38	+0.1
9,806	+		EX31_RS16905	0.40	-0.7
9,837	+		EX31_RS16905	0.42	+0.5
9,837	+		EX31_RS16905	0.42	+0.2
9,838	-		EX31_RS16905	0.42	+0.8
9,930	+		EX31_RS16905	0.50	-0.6
9,930	+		EX31_RS16905	0.50	-0.2
9,930	+		EX31_RS16905	0.50	-0.2
9,930	+		EX31_RS16905	0.50	+0.1
9,944	+		EX31_RS16905	0.51	-1.1
9,945	-		EX31_RS16905	0.51	-1.1
9,945	-		EX31_RS16905	0.51	+0.2
10,036	+		EX31_RS16905	0.59	+0.3
10,036	+		EX31_RS16905	0.59	+0.1
10,036	+		EX31_RS16905	0.59	-0.0
10,037	-		EX31_RS16905	0.59	-0.8
10,037	-		EX31_RS16905	0.59	-0.8
10,037	-		EX31_RS16905	0.59	-2.3
10,037	-		EX31_RS16905	0.59	-0.3
10,037	-		EX31_RS16905	0.59	+0.5
10,037	-		EX31_RS16905	0.59	+0.6
10,047	+		EX31_RS16905	0.60	-0.1
10,163	+		EX31_RS16905	0.70	-0.0
10,164	-		EX31_RS16905	0.70	+0.0
10,164	-		EX31_RS16905	0.70	-0.4
10,164	-		EX31_RS16905	0.70	-0.2
10,167	+		EX31_RS16905	0.70	-0.6
10,167	+		EX31_RS16905	0.70	-1.5
10,167	+		EX31_RS16905	0.70	-0.1
10,167	+		EX31_RS16905	0.70	-0.1
10,167	+		EX31_RS16905	0.70	+0.5
10,168	-		EX31_RS16905	0.70	-0.0
10,168	-		EX31_RS16905	0.70	+0.9
10,168	-		EX31_RS16905	0.70	-0.2
10,168	-		EX31_RS16905	0.70	+0.8
10,168	-		EX31_RS16905	0.70	+0.2
10,168	-		EX31_RS16905	0.70	+0.1
10,168	-		EX31_RS16905	0.70	-0.3
10,168	-		EX31_RS16905	0.70	+0.5
10,168	-		EX31_RS16905	0.70	-0.1
10,168	-		EX31_RS16905	0.70	+0.1
10,168	-		EX31_RS16905	0.70	+0.1
10,172	+		EX31_RS16905	0.70	-0.7
10,172	+		EX31_RS16905	0.70	+0.4
10,172	+		EX31_RS16905	0.70	+0.7
10,172	+		EX31_RS16905	0.70	+0.5
10,172	+		EX31_RS16905	0.70	-0.3
10,172	+		EX31_RS16905	0.70	+0.6
10,172	+		EX31_RS16905	0.70	-0.6
10,172	+		EX31_RS16905	0.70	-0.9
10,175	+		EX31_RS16905	0.71	+1.5
10,175	+		EX31_RS16905	0.71	+0.1
10,175	+		EX31_RS16905	0.71	-0.4
10,175	+		EX31_RS16905	0.71	+0.6
10,175	+		EX31_RS16905	0.71	+0.1
10,175	+		EX31_RS16905	0.71	-0.3
10,175	+		EX31_RS16905	0.71	-0.8
10,176	-		EX31_RS16905	0.71	-1.3
10,176	-		EX31_RS16905	0.71	-0.4
10,176	-		EX31_RS16905	0.71	+0.2
10,176	-		EX31_RS16905	0.71	-1.6
10,176	-		EX31_RS16905	0.71	-0.4
10,176	-		EX31_RS16905	0.71	+1.6
10,190	+		EX31_RS16905	0.72	+0.6
10,191	-		EX31_RS16905	0.72	+0.1
10,202	+		EX31_RS16905	0.73	-1.0
10,202	+		EX31_RS16905	0.73	-0.4
10,202	+		EX31_RS16905	0.73	+0.3
10,202	+		EX31_RS16905	0.73	-0.3
10,202	+		EX31_RS16905	0.73	+0.0
10,203	-		EX31_RS16905	0.73	+0.8
10,203	-		EX31_RS16905	0.73	-2.0
10,203	-		EX31_RS16905	0.73	-0.6
10,207	-		EX31_RS16905	0.73	-0.4
10,207	-		EX31_RS16905	0.73	+0.1
10,207	-		EX31_RS16905	0.73	+2.2
10,207	-		EX31_RS16905	0.73	-0.6
10,231	-		EX31_RS16905	0.75	+0.7
10,286	+		EX31_RS16905	0.80	+1.1
10,298	+		EX31_RS16905	0.81	-0.1
10,299	-		EX31_RS16905	0.81	+1.1
10,304	+		EX31_RS16905	0.81	+0.2
10,304	+		EX31_RS16905	0.81	-0.7
10,304	+		EX31_RS16905	0.81	+0.3
10,305	-		EX31_RS16905	0.81	+0.5
10,305	-		EX31_RS16905	0.81	+0.1
10,305	-		EX31_RS16905	0.81	+2.8
10,305	-		EX31_RS16905	0.81	-0.2
10,305	-		EX31_RS16905	0.81	+0.9
10,444	+				-1.3
10,444	+				-1.2
10,444	+				+0.2
10,444	+				-0.6
10,445	-				+0.9
10,445	-				+1.4
10,445	-				-0.2
10,445	-				-1.1
10,484	-				-0.4
10,525	+				+0.6
10,525	+				-0.7
10,525	+				-0.1
10,526	-				+0.2
10,526	-				+0.8
10,526	-				-1.0
10,556	+				-1.7
10,556	+				-1.8
10,557	-				+0.1
10,557	-				+0.6
10,564	+				+0.2
10,564	+				+0.3
10,565	-				-0.9
10,612	+				+1.6
10,612	+				-0.1
10,612	+				+0.3
10,612	+				-0.2
10,612	+				+0.5
10,612	+				-0.5
10,612	+				-1.7
10,613	-				+0.5
10,613	-				+0.8
10,613	-				-0.1
10,613	-				-0.8
10,613	-				+0.0
10,613	-				+0.2
10,620	-				+0.1
10,620	-				-0.7
10,655	+				+0.3
10,655	+				-0.4
10,655	+				+0.6
10,656	-				+1.1
10,656	-				-0.4
10,656	-				-0.6
10,656	-				-0.4
10,656	-				+0.1
10,713	+				+0.7
10,715	+				-1.0
10,715	+				+0.6
10,715	+				-0.6
10,715	+				+0.8
10,715	+				-0.0
10,715	+				-0.6
10,716	-				+2.0
10,716	-				+0.8
10,716	-				+1.5
10,716	-				+0.4
10,723	+				+0.1
10,723	+				+0.7
10,723	+				-0.1
10,723	+				+0.6
10,723	+				-0.9
10,723	+				-1.6
10,723	+				+1.2
10,723	+				-0.0
10,723	+				+2.1
10,723	+				+0.3
10,723	+				-0.2
10,723	+				+0.1
10,723	+				+0.2
10,723	+				+0.9
10,723	+				+0.8
10,723	+				+1.1
10,723	+				+0.6
10,723	+				-0.4
10,723	+				+1.0
10,723	+				+0.1
10,723	+				+0.8
10,723	+				-0.0
10,724	-				+0.6
10,724	-				+0.3
10,724	-				-0.2
10,724	-				+0.5
10,724	-				+0.1
10,724	-				-0.1
10,724	-				-0.1
10,724	-				+0.2
10,724	-				-0.2
10,724	-				-2.1
10,724	-				-0.3
10,724	-				+0.4
10,724	-				-1.2
10,726	+				+0.8
10,726	+				+0.5
10,726	+				-0.6
10,727	-				-0.8
10,727	-				-1.6
10,727	-				+0.9
10,727	-				+0.5
10,727	-				-0.5
10,764	-		EX31_RS16910	0.12	+0.6
10,857	+		EX31_RS16910	0.20	-0.1
10,857	+		EX31_RS16910	0.20	-0.5
10,858	-		EX31_RS16910	0.20	+0.1
10,891	+		EX31_RS16910	0.23	+0.2
10,891	+		EX31_RS16910	0.23	-0.6
10,892	-		EX31_RS16910	0.23	+0.1
10,892	-		EX31_RS16910	0.23	-0.2
10,935	+		EX31_RS16910	0.26	-0.0
10,936	-		EX31_RS16910	0.27	-0.3
10,936	-		EX31_RS16910	0.27	-0.1
10,942	+		EX31_RS16910	0.27	-0.2
10,943	-		EX31_RS16910	0.27	-0.4
10,951	+		EX31_RS16910	0.28	-0.1
10,952	-		EX31_RS16910	0.28	-0.2
11,033	+		EX31_RS16910	0.35	-0.5
11,033	+		EX31_RS16910	0.35	-0.5
11,033	+		EX31_RS16910	0.35	+1.0
11,034	-		EX31_RS16910	0.35	+0.7
11,034	-		EX31_RS16910	0.35	+0.4
11,034	-		EX31_RS16910	0.35	-0.5
11,079	+		EX31_RS16910	0.38	-0.2
11,080	-		EX31_RS16910	0.39	-0.1
11,080	-		EX31_RS16910	0.39	-0.4
11,080	-		EX31_RS16910	0.39	-0.4
11,080	-		EX31_RS16910	0.39	+0.1
11,080	-		EX31_RS16910	0.39	-0.1
11,080	-		EX31_RS16910	0.39	-0.9
11,106	+		EX31_RS16910	0.41	-0.0
11,107	-		EX31_RS16910	0.41	-0.5
11,107	-		EX31_RS16910	0.41	-1.8
11,114	+		EX31_RS16910	0.41	+0.3
11,115	-		EX31_RS16910	0.41	+0.7
11,115	-		EX31_RS16910	0.41	+1.7
11,115	-		EX31_RS16910	0.41	-0.1
11,139	+		EX31_RS16910	0.43	+0.4
11,139	+		EX31_RS16910	0.43	+1.6
11,139	+		EX31_RS16910	0.43	-0.5
11,140	-		EX31_RS16910	0.43	-0.9
11,140	-		EX31_RS16910	0.43	+0.3
11,140	-		EX31_RS16910	0.43	-1.3
11,140	-		EX31_RS16910	0.43	-0.9
11,242	+		EX31_RS16910	0.52	+0.4
11,242	+		EX31_RS16910	0.52	+0.0
11,242	+		EX31_RS16910	0.52	-0.9
11,243	-		EX31_RS16910	0.52	+0.7
11,243	-		EX31_RS16910	0.52	+0.9
11,243	-		EX31_RS16910	0.52	+0.4
11,243	-		EX31_RS16910	0.52	-0.4
11,243	-		EX31_RS16910	0.52	+0.7
11,243	-		EX31_RS16910	0.52	-0.6
11,243	-		EX31_RS16910	0.52	+0.5
11,278	+		EX31_RS16910	0.55	+0.5
11,278	+		EX31_RS16910	0.55	-0.7
11,278	+		EX31_RS16910	0.55	+0.4
11,278	+		EX31_RS16910	0.55	+0.3
11,278	+		EX31_RS16910	0.55	+0.7
11,279	-		EX31_RS16910	0.55	+0.2
11,279	-		EX31_RS16910	0.55	-0.2
11,279	-		EX31_RS16910	0.55	+0.1
11,279	-		EX31_RS16910	0.55	+0.1
11,279	-		EX31_RS16910	0.55	-0.3
11,279	-		EX31_RS16910	0.55	-0.0
11,279	-		EX31_RS16910	0.55	+0.4
11,280	+		EX31_RS16910	0.55	+0.2
11,280	+		EX31_RS16910	0.55	+0.5
11,290	-		EX31_RS16910	0.56	+0.5
11,354	-		EX31_RS16910	0.61	-0.6
11,354	-		EX31_RS16910	0.61	+0.6
11,354	-		EX31_RS16910	0.61	-0.4
11,384	+		EX31_RS16910	0.64	+0.1
11,384	+		EX31_RS16910	0.64	-0.2
11,384	+		EX31_RS16910	0.64	-0.1
11,385	-		EX31_RS16910	0.64	-0.3
11,385	-		EX31_RS16910	0.64	-0.1
11,385	-		EX31_RS16910	0.64	+0.6
11,392	+		EX31_RS16910	0.65	-0.4
11,428	+		EX31_RS16910	0.68	+0.0
11,429	-		EX31_RS16910	0.68	+0.2
11,462	-		EX31_RS16910	0.70	-0.9
11,462	-		EX31_RS16910	0.70	+0.2