Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13840 and EX31_RS13845 are separated by 360 nucleotides EX31_RS13845 and EX31_RS13850 are separated by 78 nucleotides EX31_RS13850 and EX31_RS13855 are separated by 254 nucleotides
EX31_RS13840: EX31_RS13840 - Bcr/CflA family multidrug efflux MFS transporter, at 26,926 to 28,137
_RS13840
EX31_RS13845: EX31_RS13845 - cyclopropane fatty acyl phospholipid synthase, at 28,498 to 29,649
_RS13845
EX31_RS13850: EX31_RS13850 - riboflavin synthase, at 29,728 to 30,381
_RS13850
EX31_RS13855: EX31_RS13855 - MATE family efflux transporter, at 30,636 to 32,009
_RS13855
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.655 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.669 kb on + strand, within EX31_RS13840 at 27.726 kb on + strand, within EX31_RS13840 at 27.816 kb on + strand, within EX31_RS13840 at 27.865 kb on + strand, within EX31_RS13840 at 27.865 kb on + strand, within EX31_RS13840 at 27.936 kb on + strand, within EX31_RS13840 at 27.936 kb on + strand, within EX31_RS13840 at 27.987 kb on + strand, within EX31_RS13840 at 27.987 kb on + strand, within EX31_RS13840 at 27.987 kb on + strand, within EX31_RS13840 at 28.029 kb on + strand at 28.029 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.034 kb on + strand at 28.043 kb on + strand at 28.043 kb on + strand at 28.044 kb on - strand at 28.224 kb on - strand at 28.225 kb on + strand at 28.247 kb on + strand at 28.274 kb on + strand at 28.274 kb on + strand at 28.278 kb on + strand at 28.278 kb on + strand at 28.278 kb on + strand at 28.279 kb on - strand at 28.279 kb on - strand at 28.279 kb on - strand at 28.318 kb on - strand at 28.425 kb on + strand at 28.468 kb on + strand at 28.468 kb on + strand at 28.468 kb on + strand at 28.468 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.497 kb on + strand at 28.498 kb on - strand at 28.512 kb on + strand at 28.513 kb on - strand at 28.514 kb on + strand at 28.514 kb on + strand at 28.514 kb on + strand at 28.514 kb on + strand at 28.582 kb on - strand at 28.582 kb on - strand at 28.582 kb on - strand at 28.614 kb on + strand, within EX31_RS13845 at 28.649 kb on + strand, within EX31_RS13845 at 28.681 kb on + strand, within EX31_RS13845 at 28.681 kb on + strand, within EX31_RS13845 at 28.682 kb on - strand, within EX31_RS13845 at 28.682 kb on - strand, within EX31_RS13845 at 28.682 kb on - strand, within EX31_RS13845 at 28.683 kb on + strand, within EX31_RS13845 at 28.716 kb on + strand, within EX31_RS13845 at 28.755 kb on + strand, within EX31_RS13845 at 28.755 kb on + strand, within EX31_RS13845 at 28.755 kb on + strand, within EX31_RS13845 at 28.779 kb on + strand, within EX31_RS13845 at 28.780 kb on - strand, within EX31_RS13845 at 28.780 kb on - strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.784 kb on + strand, within EX31_RS13845 at 28.855 kb on + strand, within EX31_RS13845 at 28.856 kb on - strand, within EX31_RS13845 at 28.875 kb on - strand, within EX31_RS13845 at 28.898 kb on - strand, within EX31_RS13845 at 28.906 kb on + strand, within EX31_RS13845 at 28.907 kb on - strand, within EX31_RS13845 at 29.161 kb on + strand, within EX31_RS13845 at 29.172 kb on + strand, within EX31_RS13845 at 29.172 kb on + strand, within EX31_RS13845 at 29.173 kb on - strand, within EX31_RS13845 at 29.248 kb on - strand, within EX31_RS13845 at 29.307 kb on + strand, within EX31_RS13845 at 29.311 kb on - strand, within EX31_RS13845 at 29.322 kb on + strand, within EX31_RS13845 at 29.322 kb on + strand, within EX31_RS13845 at 29.323 kb on - strand, within EX31_RS13845 at 29.323 kb on - strand, within EX31_RS13845 at 29.343 kb on + strand, within EX31_RS13845 at 29.347 kb on + strand, within EX31_RS13845 at 29.347 kb on + strand, within EX31_RS13845 at 29.347 kb on + strand, within EX31_RS13845 at 29.347 kb on + strand, within EX31_RS13845 at 29.348 kb on - strand, within EX31_RS13845 at 29.348 kb on - strand, within EX31_RS13845 at 29.348 kb on - strand, within EX31_RS13845 at 29.348 kb on - strand, within EX31_RS13845 at 29.408 kb on + strand, within EX31_RS13845 at 29.433 kb on + strand, within EX31_RS13845 at 29.512 kb on + strand, within EX31_RS13845 at 29.512 kb on + strand, within EX31_RS13845 at 29.512 kb on + strand, within EX31_RS13845 at 29.542 kb on + strand at 29.542 kb on + strand at 29.542 kb on + strand at 29.542 kb on + strand at 29.543 kb on - strand at 29.543 kb on - strand at 29.543 kb on - strand at 29.545 kb on + strand at 29.546 kb on - strand at 29.640 kb on - strand at 29.651 kb on - strand at 29.656 kb on + strand at 29.656 kb on + strand at 29.656 kb on + strand at 29.657 kb on - strand at 29.663 kb on + strand at 29.667 kb on + strand at 29.668 kb on - strand at 29.725 kb on - strand at 29.729 kb on + strand at 29.730 kb on - strand at 29.730 kb on - strand at 29.740 kb on - strand at 29.789 kb on - strand at 30.415 kb on - strand at 30.415 kb on - strand at 30.448 kb on - strand at 30.448 kb on - strand at 30.478 kb on + strand at 30.479 kb on - strand at 30.479 kb on - strand at 30.479 kb on - strand at 30.514 kb on + strand at 30.515 kb on - strand at 30.515 kb on - strand at 30.552 kb on - strand at 30.552 kb on - strand at 30.552 kb on - strand at 30.568 kb on + strand at 30.568 kb on + strand at 30.569 kb on - strand at 30.569 kb on - strand at 30.612 kb on - strand at 30.613 kb on + strand at 30.632 kb on - strand at 30.632 kb on - strand at 30.645 kb on + strand at 30.645 kb on + strand at 30.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 27,655 + EX31_RS13840 0.60 +1.3 27,655 + EX31_RS13840 0.60 +0.3 27,655 + EX31_RS13840 0.60 +0.2 27,655 + EX31_RS13840 0.60 +0.1 27,655 + EX31_RS13840 0.60 +0.2 27,655 + EX31_RS13840 0.60 -0.1 27,655 + EX31_RS13840 0.60 +0.2 27,655 + EX31_RS13840 0.60 +1.4 27,669 + EX31_RS13840 0.61 -0.1 27,669 + EX31_RS13840 0.61 +0.0 27,669 + EX31_RS13840 0.61 -0.2 27,669 + EX31_RS13840 0.61 +0.7 27,669 + EX31_RS13840 0.61 -0.2 27,726 + EX31_RS13840 0.66 +0.3 27,816 + EX31_RS13840 0.73 +0.2 27,865 + EX31_RS13840 0.77 +0.1 27,865 + EX31_RS13840 0.77 +0.0 27,936 + EX31_RS13840 0.83 -0.4 27,936 + EX31_RS13840 0.83 +0.0 27,987 + EX31_RS13840 0.88 +0.4 27,987 + EX31_RS13840 0.88 +0.1 27,987 + EX31_RS13840 0.88 +0.0 28,029 + -0.5 28,029 + -0.3 28,034 + +0.9 28,034 + -0.1 28,034 + -0.3 28,034 + +0.5 28,034 + -0.0 28,034 + -0.4 28,034 + -0.8 28,034 + +0.3 28,043 + +0.1 28,043 + +0.1 28,044 - +0.1 28,224 - -0.7 28,225 + -0.4 28,247 + +0.5 28,274 + +0.9 28,274 + +0.5 28,278 + +0.5 28,278 + +0.7 28,278 + -0.2 28,279 - -1.4 28,279 - +0.3 28,279 - -0.1 28,318 - -0.3 28,425 + -0.1 28,468 + +0.1 28,468 + +0.3 28,468 + +0.2 28,468 + +0.0 28,497 + -0.2 28,497 + +0.3 28,497 + +0.2 28,497 + -0.3 28,497 + -0.8 28,498 - -0.7 28,512 + +0.3 28,513 - -0.5 28,514 + -0.2 28,514 + +0.0 28,514 + -0.2 28,514 + -0.3 28,582 - -0.1 28,582 - -0.9 28,582 - -1.1 28,614 + EX31_RS13845 0.10 -0.8 28,649 + EX31_RS13845 0.13 +0.3 28,681 + EX31_RS13845 0.16 -0.5 28,681 + EX31_RS13845 0.16 +0.5 28,682 - EX31_RS13845 0.16 -0.7 28,682 - EX31_RS13845 0.16 -0.8 28,682 - EX31_RS13845 0.16 -2.1 28,683 + EX31_RS13845 0.16 +0.2 28,716 + EX31_RS13845 0.19 +1.0 28,755 + EX31_RS13845 0.22 +0.4 28,755 + EX31_RS13845 0.22 -0.6 28,755 + EX31_RS13845 0.22 -0.8 28,779 + EX31_RS13845 0.24 -0.1 28,780 - EX31_RS13845 0.24 -0.2 28,780 - EX31_RS13845 0.24 -1.9 28,784 + EX31_RS13845 0.25 -0.5 28,784 + EX31_RS13845 0.25 -1.1 28,784 + EX31_RS13845 0.25 -0.6 28,784 + EX31_RS13845 0.25 -0.2 28,855 + EX31_RS13845 0.31 +0.1 28,856 - EX31_RS13845 0.31 -0.5 28,875 - EX31_RS13845 0.33 -0.8 28,898 - EX31_RS13845 0.35 -0.6 28,906 + EX31_RS13845 0.35 -0.5 28,907 - EX31_RS13845 0.36 -0.0 29,161 + EX31_RS13845 0.58 -0.2 29,172 + EX31_RS13845 0.59 -0.6 29,172 + EX31_RS13845 0.59 -1.2 29,173 - EX31_RS13845 0.59 -0.1 29,248 - EX31_RS13845 0.65 +0.2 29,307 + EX31_RS13845 0.70 +0.5 29,311 - EX31_RS13845 0.71 -0.3 29,322 + EX31_RS13845 0.72 -0.3 29,322 + EX31_RS13845 0.72 -1.3 29,323 - EX31_RS13845 0.72 -1.0 29,323 - EX31_RS13845 0.72 -1.0 29,343 + EX31_RS13845 0.73 +0.2 29,347 + EX31_RS13845 0.74 -0.1 29,347 + EX31_RS13845 0.74 -1.1 29,347 + EX31_RS13845 0.74 -1.4 29,347 + EX31_RS13845 0.74 -0.7 29,348 - EX31_RS13845 0.74 +0.1 29,348 - EX31_RS13845 0.74 -0.0 29,348 - EX31_RS13845 0.74 -1.0 29,348 - EX31_RS13845 0.74 -0.8 29,408 + EX31_RS13845 0.79 +0.6 29,433 + EX31_RS13845 0.81 -1.4 29,512 + EX31_RS13845 0.88 +0.5 29,512 + EX31_RS13845 0.88 -0.4 29,512 + EX31_RS13845 0.88 -0.5 29,542 + -0.3 29,542 + -0.4 29,542 + +0.3 29,542 + -0.6 29,543 - -0.2 29,543 - -0.6 29,543 - -1.7 29,545 + -1.1 29,546 - -0.9 29,640 - -1.2 29,651 - +0.3 29,656 + +0.3 29,656 + +0.7 29,656 + -0.3 29,657 - -0.8 29,663 + -1.0 29,667 + +1.5 29,668 - -0.1 29,725 - -0.2 29,729 + -0.2 29,730 - +0.1 29,730 - +0.5 29,740 - +0.1 29,789 - +0.3 30,415 - +0.3 30,415 - -1.2 30,448 - -0.1 30,448 - -0.5 30,478 + -1.0 30,479 - +1.4 30,479 - +0.2 30,479 - -0.0 30,514 + -0.7 30,515 - +0.8 30,515 - +0.2 30,552 - -0.0 30,552 - -0.8 30,552 - -0.3 30,568 + -0.9 30,568 + -0.0 30,569 - +0.1 30,569 - +0.1 30,612 - -0.4 30,613 + -1.0 30,632 - -0.3 30,632 - +0.2 30,645 + -0.3 30,645 + +0.4 30,646 - -0.9
Or see this region's nucleotide sequence