Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11655 and EX31_RS11660 are separated by 298 nucleotides EX31_RS11660 and EX31_RS11665 overlap by 4 nucleotides
EX31_RS11655: EX31_RS11655 - LysR family transcriptional regulator, at 273,071 to 273,970
_RS11655
EX31_RS11660: EX31_RS11660 - MFS transporter, at 274,269 to 275,681
_RS11660
EX31_RS11665: EX31_RS11665 - glycosyl hydrolase, at 275,678 to 278,056
_RS11665
Position (kb) 274
275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.361 kb on + strand, within EX31_RS11655 at 273.364 kb on + strand, within EX31_RS11655 at 273.364 kb on + strand, within EX31_RS11655 at 273.365 kb on - strand, within EX31_RS11655 at 273.367 kb on + strand, within EX31_RS11655 at 273.368 kb on - strand, within EX31_RS11655 at 273.575 kb on + strand, within EX31_RS11655 at 273.797 kb on + strand, within EX31_RS11655 at 273.798 kb on - strand, within EX31_RS11655 at 273.798 kb on - strand, within EX31_RS11655 at 273.798 kb on - strand, within EX31_RS11655 at 273.841 kb on + strand, within EX31_RS11655 at 273.842 kb on - strand, within EX31_RS11655 at 273.842 kb on - strand, within EX31_RS11655 at 273.896 kb on + strand at 273.897 kb on - strand at 273.930 kb on + strand at 274.268 kb on - strand at 274.371 kb on + strand at 274.420 kb on + strand, within EX31_RS11660 at 274.453 kb on + strand, within EX31_RS11660 at 274.453 kb on + strand, within EX31_RS11660 at 274.570 kb on + strand, within EX31_RS11660 at 274.617 kb on + strand, within EX31_RS11660 at 274.638 kb on + strand, within EX31_RS11660 at 274.815 kb on + strand, within EX31_RS11660 at 274.815 kb on + strand, within EX31_RS11660 at 274.816 kb on - strand, within EX31_RS11660 at 274.822 kb on - strand, within EX31_RS11660 at 274.894 kb on - strand, within EX31_RS11660 at 274.993 kb on + strand, within EX31_RS11660 at 274.993 kb on + strand, within EX31_RS11660 at 274.996 kb on + strand, within EX31_RS11660 at 275.031 kb on + strand, within EX31_RS11660 at 275.032 kb on - strand, within EX31_RS11660 at 275.032 kb on - strand, within EX31_RS11660 at 275.032 kb on - strand, within EX31_RS11660 at 275.139 kb on - strand, within EX31_RS11660 at 275.160 kb on + strand, within EX31_RS11660 at 275.161 kb on - strand, within EX31_RS11660 at 275.433 kb on - strand, within EX31_RS11660 at 275.433 kb on - strand, within EX31_RS11660 at 275.553 kb on + strand at 275.554 kb on - strand at 275.554 kb on - strand at 275.582 kb on + strand at 275.674 kb on + strand at 275.675 kb on - strand at 275.675 kb on - strand at 275.684 kb on + strand at 275.685 kb on - strand at 275.685 kb on - strand at 275.946 kb on + strand, within EX31_RS11665 at 275.979 kb on + strand, within EX31_RS11665 at 275.979 kb on + strand, within EX31_RS11665 at 275.980 kb on - strand, within EX31_RS11665 at 276.036 kb on + strand, within EX31_RS11665 at 276.037 kb on - strand, within EX31_RS11665 at 276.077 kb on + strand, within EX31_RS11665 at 276.078 kb on - strand, within EX31_RS11665 at 276.208 kb on + strand, within EX31_RS11665 at 276.209 kb on - strand, within EX31_RS11665 at 276.264 kb on - strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.318 kb on - strand, within EX31_RS11665 at 276.318 kb on - strand, within EX31_RS11665
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 273,361 + EX31_RS11655 0.32 +0.8 273,364 + EX31_RS11655 0.33 +0.7 273,364 + EX31_RS11655 0.33 +0.1 273,365 - EX31_RS11655 0.33 +0.4 273,367 + EX31_RS11655 0.33 -0.4 273,368 - EX31_RS11655 0.33 -0.1 273,575 + EX31_RS11655 0.56 -1.0 273,797 + EX31_RS11655 0.81 +0.2 273,798 - EX31_RS11655 0.81 +0.0 273,798 - EX31_RS11655 0.81 -1.0 273,798 - EX31_RS11655 0.81 +0.1 273,841 + EX31_RS11655 0.86 -0.3 273,842 - EX31_RS11655 0.86 -0.5 273,842 - EX31_RS11655 0.86 +1.6 273,896 + -0.6 273,897 - -0.4 273,930 + +1.9 274,268 - -0.2 274,371 + +0.9 274,420 + EX31_RS11660 0.11 -0.8 274,453 + EX31_RS11660 0.13 +0.1 274,453 + EX31_RS11660 0.13 -2.3 274,570 + EX31_RS11660 0.21 -0.9 274,617 + EX31_RS11660 0.25 -1.6 274,638 + EX31_RS11660 0.26 +0.1 274,815 + EX31_RS11660 0.39 -0.2 274,815 + EX31_RS11660 0.39 -0.0 274,816 - EX31_RS11660 0.39 -1.0 274,822 - EX31_RS11660 0.39 -0.2 274,894 - EX31_RS11660 0.44 -2.3 274,993 + EX31_RS11660 0.51 -0.3 274,993 + EX31_RS11660 0.51 -0.8 274,996 + EX31_RS11660 0.51 +0.8 275,031 + EX31_RS11660 0.54 -0.3 275,032 - EX31_RS11660 0.54 -0.7 275,032 - EX31_RS11660 0.54 +0.8 275,032 - EX31_RS11660 0.54 -1.4 275,139 - EX31_RS11660 0.62 +0.4 275,160 + EX31_RS11660 0.63 -0.8 275,161 - EX31_RS11660 0.63 -0.4 275,433 - EX31_RS11660 0.82 -0.1 275,433 - EX31_RS11660 0.82 -0.9 275,553 + +0.6 275,554 - +0.5 275,554 - -0.7 275,582 + -1.0 275,674 + -0.7 275,675 - +0.9 275,675 - -0.8 275,684 + -1.2 275,685 - +0.1 275,685 - -1.6 275,946 + EX31_RS11665 0.11 -0.6 275,979 + EX31_RS11665 0.13 -0.2 275,979 + EX31_RS11665 0.13 -0.8 275,980 - EX31_RS11665 0.13 -0.1 276,036 + EX31_RS11665 0.15 -0.5 276,037 - EX31_RS11665 0.15 +0.5 276,077 + EX31_RS11665 0.17 +0.2 276,078 - EX31_RS11665 0.17 +0.6 276,208 + EX31_RS11665 0.22 -0.6 276,209 - EX31_RS11665 0.22 +0.0 276,264 - EX31_RS11665 0.25 -0.6 276,317 + EX31_RS11665 0.27 +0.5 276,317 + EX31_RS11665 0.27 +1.2 276,317 + EX31_RS11665 0.27 -0.5 276,317 + EX31_RS11665 0.27 +0.3 276,317 + EX31_RS11665 0.27 +0.2 276,318 - EX31_RS11665 0.27 -1.0 276,318 - EX31_RS11665 0.27 -0.3
Or see this region's nucleotide sequence