Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10070 and EX31_RS10075 are separated by 535 nucleotides EX31_RS10075 and EX31_RS10080 are separated by 112 nucleotides
EX31_RS10070: EX31_RS10070 - YchE family NAAT transporter, at 222,005 to 222,649
_RS10070
EX31_RS10075: EX31_RS10075 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 223,185 to 225,854
_RS10075
EX31_RS10080: EX31_RS10080 - thymidine kinase, at 225,967 to 226,575
_RS10080
Position (kb) 223
224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 222.233 kb on + strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.276 kb on - strand, within EX31_RS10070 at 222.430 kb on + strand, within EX31_RS10070 at 222.430 kb on + strand, within EX31_RS10070 at 222.430 kb on + strand, within EX31_RS10070 at 222.431 kb on - strand, within EX31_RS10070 at 222.431 kb on - strand, within EX31_RS10070 at 222.479 kb on + strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.481 kb on + strand, within EX31_RS10070 at 222.482 kb on - strand, within EX31_RS10070 at 222.482 kb on - strand, within EX31_RS10070 at 222.482 kb on - strand, within EX31_RS10070 at 222.508 kb on + strand, within EX31_RS10070 at 222.518 kb on - strand, within EX31_RS10070 at 222.518 kb on - strand, within EX31_RS10070 at 222.540 kb on + strand, within EX31_RS10070 at 222.540 kb on + strand, within EX31_RS10070 at 222.541 kb on - strand, within EX31_RS10070 at 222.616 kb on + strand at 222.617 kb on - strand at 222.617 kb on - strand at 222.618 kb on + strand at 222.618 kb on + strand at 222.619 kb on - strand at 222.619 kb on - strand at 222.619 kb on - strand at 222.636 kb on - strand at 222.663 kb on + strand at 222.663 kb on + strand at 222.663 kb on + strand at 222.664 kb on - strand at 222.664 kb on - strand at 222.664 kb on - strand at 222.667 kb on + strand at 222.668 kb on - strand at 222.668 kb on - strand at 222.668 kb on - strand at 222.668 kb on - strand at 222.675 kb on + strand at 222.675 kb on + strand at 222.676 kb on - strand at 222.676 kb on - strand at 222.703 kb on + strand at 222.777 kb on - strand at 222.777 kb on - strand at 222.811 kb on - strand at 222.817 kb on - strand at 222.895 kb on + strand at 222.899 kb on + strand at 222.928 kb on - strand at 222.934 kb on - strand at 222.934 kb on - strand at 222.938 kb on - strand at 222.938 kb on - strand at 222.947 kb on - strand at 222.947 kb on - strand at 222.950 kb on + strand at 222.951 kb on - strand at 222.951 kb on - strand at 222.964 kb on + strand at 222.965 kb on - strand at 222.975 kb on + strand at 223.002 kb on - strand at 223.005 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.128 kb on - strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.132 kb on + strand at 223.147 kb on + strand at 223.147 kb on + strand at 223.170 kb on + strand at 223.192 kb on + strand at 223.211 kb on - strand at 223.251 kb on + strand at 223.413 kb on + strand at 223.413 kb on + strand at 223.414 kb on - strand at 223.414 kb on - strand at 223.422 kb on + strand at 223.423 kb on - strand at 223.423 kb on - strand at 223.610 kb on + strand, within EX31_RS10075 at 223.679 kb on + strand, within EX31_RS10075 at 223.679 kb on + strand, within EX31_RS10075 at 223.679 kb on + strand, within EX31_RS10075 at 223.708 kb on + strand, within EX31_RS10075 at 223.791 kb on + strand, within EX31_RS10075 at 223.792 kb on - strand, within EX31_RS10075 at 223.794 kb on - strand, within EX31_RS10075 at 223.794 kb on - strand, within EX31_RS10075 at 223.830 kb on - strand, within EX31_RS10075 at 223.832 kb on + strand, within EX31_RS10075 at 223.832 kb on + strand, within EX31_RS10075 at 223.832 kb on + strand, within EX31_RS10075 at 223.896 kb on - strand, within EX31_RS10075 at 223.959 kb on + strand, within EX31_RS10075 at 223.959 kb on + strand, within EX31_RS10075 at 223.959 kb on + strand, within EX31_RS10075 at 223.959 kb on + strand, within EX31_RS10075 at 223.960 kb on - strand, within EX31_RS10075 at 223.960 kb on - strand, within EX31_RS10075 at 223.961 kb on + strand, within EX31_RS10075 at 223.961 kb on + strand, within EX31_RS10075 at 223.961 kb on + strand, within EX31_RS10075 at 223.961 kb on + strand, within EX31_RS10075 at 223.961 kb on + strand, within EX31_RS10075 at 223.961 kb on + strand, within EX31_RS10075 at 223.962 kb on - strand, within EX31_RS10075 at 223.962 kb on - strand, within EX31_RS10075 at 223.998 kb on + strand, within EX31_RS10075 at 223.998 kb on + strand, within EX31_RS10075 at 224.013 kb on - strand, within EX31_RS10075 at 224.036 kb on + strand, within EX31_RS10075 at 224.074 kb on + strand, within EX31_RS10075 at 224.114 kb on + strand, within EX31_RS10075 at 224.211 kb on - strand, within EX31_RS10075 at 224.214 kb on + strand, within EX31_RS10075 at 224.300 kb on + strand, within EX31_RS10075 at 224.300 kb on + strand, within EX31_RS10075 at 224.300 kb on + strand, within EX31_RS10075 at 224.301 kb on - strand, within EX31_RS10075 at 224.409 kb on + strand, within EX31_RS10075 at 224.409 kb on + strand, within EX31_RS10075 at 224.556 kb on - strand, within EX31_RS10075 at 224.565 kb on + strand, within EX31_RS10075 at 224.566 kb on - strand, within EX31_RS10075 at 224.638 kb on + strand, within EX31_RS10075 at 224.705 kb on + strand, within EX31_RS10075 at 224.846 kb on + strand, within EX31_RS10075 at 224.846 kb on + strand, within EX31_RS10075 at 224.847 kb on - strand, within EX31_RS10075 at 224.903 kb on + strand, within EX31_RS10075 at 224.903 kb on + strand, within EX31_RS10075 at 224.903 kb on + strand, within EX31_RS10075 at 224.904 kb on - strand, within EX31_RS10075 at 224.904 kb on - strand, within EX31_RS10075 at 224.911 kb on + strand, within EX31_RS10075 at 224.911 kb on + strand, within EX31_RS10075 at 224.911 kb on + strand, within EX31_RS10075 at 224.911 kb on + strand, within EX31_RS10075 at 224.911 kb on + strand, within EX31_RS10075 at 224.911 kb on + strand, within EX31_RS10075 at 224.912 kb on - strand, within EX31_RS10075 at 224.912 kb on - strand, within EX31_RS10075 at 224.912 kb on - strand, within EX31_RS10075 at 224.912 kb on - strand, within EX31_RS10075 at 224.912 kb on - strand, within EX31_RS10075 at 224.915 kb on + strand, within EX31_RS10075 at 224.916 kb on - strand, within EX31_RS10075 at 224.922 kb on - strand, within EX31_RS10075 at 225.018 kb on - strand, within EX31_RS10075 at 225.058 kb on - strand, within EX31_RS10075 at 225.168 kb on + strand, within EX31_RS10075 at 225.169 kb on - strand, within EX31_RS10075 at 225.169 kb on - strand, within EX31_RS10075 at 225.253 kb on - strand, within EX31_RS10075 at 225.266 kb on + strand, within EX31_RS10075 at 225.437 kb on + strand, within EX31_RS10075 at 225.437 kb on + strand, within EX31_RS10075 at 225.437 kb on + strand, within EX31_RS10075 at 225.438 kb on - strand, within EX31_RS10075 at 225.438 kb on - strand, within EX31_RS10075 at 225.481 kb on - strand, within EX31_RS10075 at 225.529 kb on + strand, within EX31_RS10075 at 225.530 kb on - strand, within EX31_RS10075 at 225.555 kb on - strand, within EX31_RS10075 at 225.727 kb on - strand at 225.765 kb on - strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.769 kb on - strand at 225.769 kb on - strand at 225.769 kb on - strand at 225.771 kb on + strand at 225.783 kb on + strand at 225.784 kb on - strand at 225.796 kb on + strand at 225.797 kb on - strand at 225.797 kb on - strand at 225.865 kb on + strand at 225.866 kb on - strand at 225.872 kb on - strand at 225.924 kb on - strand at 225.950 kb on + strand at 225.951 kb on - strand at 225.969 kb on - strand at 225.978 kb on + strand at 225.978 kb on + strand at 225.979 kb on - strand at 225.979 kb on - strand at 225.979 kb on - strand at 226.020 kb on - strand at 226.020 kb on - strand at 226.027 kb on - strand at 226.085 kb on - strand, within EX31_RS10080 at 226.085 kb on - strand, within EX31_RS10080 at 226.085 kb on - strand, within EX31_RS10080 at 226.188 kb on - strand, within EX31_RS10080 at 226.188 kb on - strand, within EX31_RS10080 at 226.235 kb on + strand, within EX31_RS10080 at 226.243 kb on + strand, within EX31_RS10080 at 226.244 kb on - strand, within EX31_RS10080 at 226.391 kb on + strand, within EX31_RS10080 at 226.391 kb on + strand, within EX31_RS10080 at 226.391 kb on + strand, within EX31_RS10080 at 226.392 kb on - strand, within EX31_RS10080 at 226.392 kb on - strand, within EX31_RS10080 at 226.392 kb on - strand, within EX31_RS10080 at 226.500 kb on - strand, within EX31_RS10080 at 226.503 kb on + strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.506 kb on - strand, within EX31_RS10080 at 226.556 kb on + strand at 226.557 kb on - strand at 226.557 kb on - strand at 226.563 kb on - strand at 226.563 kb on - strand at 226.592 kb on - strand at 226.592 kb on - strand at 226.623 kb on + strand at 226.623 kb on + strand at 226.623 kb on + strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.628 kb on + strand at 226.628 kb on + strand at 226.629 kb on - strand at 226.647 kb on + strand at 226.647 kb on + strand at 226.648 kb on - strand at 226.648 kb on - strand at 226.650 kb on - strand at 226.703 kb on - strand at 226.751 kb on + strand at 226.752 kb on - strand at 226.775 kb on - strand at 226.796 kb on + strand at 226.796 kb on + strand at 226.798 kb on + strand at 226.798 kb on + strand at 226.799 kb on - strand at 226.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 222,233 + EX31_RS10070 0.35 -0.2 222,234 - EX31_RS10070 0.36 +0.4 222,234 - EX31_RS10070 0.36 +0.4 222,234 - EX31_RS10070 0.36 -0.6 222,234 - EX31_RS10070 0.36 -0.2 222,276 - EX31_RS10070 0.42 +0.1 222,430 + EX31_RS10070 0.66 -3.0 222,430 + EX31_RS10070 0.66 -0.6 222,430 + EX31_RS10070 0.66 -1.1 222,431 - EX31_RS10070 0.66 -0.8 222,431 - EX31_RS10070 0.66 +0.6 222,479 + EX31_RS10070 0.73 -0.1 222,480 - EX31_RS10070 0.74 +0.5 222,480 - EX31_RS10070 0.74 -1.2 222,480 - EX31_RS10070 0.74 +0.7 222,480 - EX31_RS10070 0.74 -0.3 222,480 - EX31_RS10070 0.74 -0.1 222,481 + EX31_RS10070 0.74 +0.3 222,482 - EX31_RS10070 0.74 -0.2 222,482 - EX31_RS10070 0.74 +0.5 222,482 - EX31_RS10070 0.74 +0.4 222,508 + EX31_RS10070 0.78 -2.5 222,518 - EX31_RS10070 0.80 +0.2 222,518 - EX31_RS10070 0.80 +0.6 222,540 + EX31_RS10070 0.83 -2.0 222,540 + EX31_RS10070 0.83 +0.1 222,541 - EX31_RS10070 0.83 -1.9 222,616 + -1.8 222,617 - +0.0 222,617 - -0.0 222,618 + -0.2 222,618 + -0.6 222,619 - +0.4 222,619 - -0.3 222,619 - -0.2 222,636 - +0.0 222,663 + +0.5 222,663 + -1.7 222,663 + +0.5 222,664 - -0.7 222,664 - -0.0 222,664 - +0.6 222,667 + +0.4 222,668 - +1.4 222,668 - -0.2 222,668 - -0.2 222,668 - +0.9 222,675 + -1.8 222,675 + -0.4 222,676 - -0.1 222,676 - -0.7 222,703 + +1.0 222,777 - +0.4 222,777 - +0.3 222,811 - -0.1 222,817 - +0.9 222,895 + +0.4 222,899 + -0.5 222,928 - -0.5 222,934 - -1.3 222,934 - -0.7 222,938 - -1.0 222,938 - -0.8 222,947 - -1.3 222,947 - -1.3 222,950 + -0.2 222,951 - -0.5 222,951 - +1.4 222,964 + -0.1 222,965 - -0.7 222,975 + +0.1 223,002 - -1.7 223,005 + +0.2 223,127 + +0.6 223,127 + +0.1 223,127 + +0.9 223,127 + +0.3 223,127 + +0.1 223,127 + -0.3 223,127 + -0.6 223,128 - -1.2 223,129 + -0.1 223,129 + -0.0 223,129 + +0.1 223,129 + +0.5 223,129 + +0.1 223,129 + +0.6 223,132 + +0.4 223,147 + -0.7 223,147 + -0.9 223,170 + -1.5 223,192 + +0.1 223,211 - -1.6 223,251 + -1.3 223,413 + -1.3 223,413 + -0.4 223,414 - -0.3 223,414 - -1.4 223,422 + -1.0 223,423 - -0.0 223,423 - -0.6 223,610 + EX31_RS10075 0.16 -1.6 223,679 + EX31_RS10075 0.19 -0.3 223,679 + EX31_RS10075 0.19 -0.9 223,679 + EX31_RS10075 0.19 -0.6 223,708 + EX31_RS10075 0.20 -1.5 223,791 + EX31_RS10075 0.23 -1.1 223,792 - EX31_RS10075 0.23 -2.6 223,794 - EX31_RS10075 0.23 -0.8 223,794 - EX31_RS10075 0.23 -0.0 223,830 - EX31_RS10075 0.24 -0.8 223,832 + EX31_RS10075 0.24 +0.0 223,832 + EX31_RS10075 0.24 -0.3 223,832 + EX31_RS10075 0.24 -1.1 223,896 - EX31_RS10075 0.27 -2.2 223,959 + EX31_RS10075 0.29 -0.9 223,959 + EX31_RS10075 0.29 -1.0 223,959 + EX31_RS10075 0.29 -1.3 223,959 + EX31_RS10075 0.29 -0.3 223,960 - EX31_RS10075 0.29 -1.0 223,960 - EX31_RS10075 0.29 -1.9 223,961 + EX31_RS10075 0.29 -1.1 223,961 + EX31_RS10075 0.29 -0.4 223,961 + EX31_RS10075 0.29 +0.6 223,961 + EX31_RS10075 0.29 -1.3 223,961 + EX31_RS10075 0.29 -0.1 223,961 + EX31_RS10075 0.29 -1.7 223,962 - EX31_RS10075 0.29 -1.3 223,962 - EX31_RS10075 0.29 -1.4 223,998 + EX31_RS10075 0.30 -0.2 223,998 + EX31_RS10075 0.30 +1.0 224,013 - EX31_RS10075 0.31 -2.4 224,036 + EX31_RS10075 0.32 -0.7 224,074 + EX31_RS10075 0.33 -0.2 224,114 + EX31_RS10075 0.35 -1.3 224,211 - EX31_RS10075 0.38 -1.8 224,214 + EX31_RS10075 0.39 +0.6 224,300 + EX31_RS10075 0.42 -1.0 224,300 + EX31_RS10075 0.42 +0.0 224,300 + EX31_RS10075 0.42 -0.4 224,301 - EX31_RS10075 0.42 -0.6 224,409 + EX31_RS10075 0.46 -0.8 224,409 + EX31_RS10075 0.46 +0.8 224,556 - EX31_RS10075 0.51 -1.8 224,565 + EX31_RS10075 0.52 -1.4 224,566 - EX31_RS10075 0.52 -1.9 224,638 + EX31_RS10075 0.54 +0.5 224,705 + EX31_RS10075 0.57 -1.2 224,846 + EX31_RS10075 0.62 -1.4 224,846 + EX31_RS10075 0.62 +0.0 224,847 - EX31_RS10075 0.62 -0.0 224,903 + EX31_RS10075 0.64 -2.1 224,903 + EX31_RS10075 0.64 -1.8 224,903 + EX31_RS10075 0.64 -0.7 224,904 - EX31_RS10075 0.64 -1.2 224,904 - EX31_RS10075 0.64 -1.8 224,911 + EX31_RS10075 0.65 -1.3 224,911 + EX31_RS10075 0.65 -1.4 224,911 + EX31_RS10075 0.65 -1.5 224,911 + EX31_RS10075 0.65 -0.6 224,911 + EX31_RS10075 0.65 -0.4 224,911 + EX31_RS10075 0.65 -1.2 224,912 - EX31_RS10075 0.65 -0.0 224,912 - EX31_RS10075 0.65 -0.1 224,912 - EX31_RS10075 0.65 +0.4 224,912 - EX31_RS10075 0.65 -0.9 224,912 - EX31_RS10075 0.65 -0.3 224,915 + EX31_RS10075 0.65 -1.2 224,916 - EX31_RS10075 0.65 -2.3 224,922 - EX31_RS10075 0.65 +0.0 225,018 - EX31_RS10075 0.69 -1.2 225,058 - EX31_RS10075 0.70 -0.8 225,168 + EX31_RS10075 0.74 -1.2 225,169 - EX31_RS10075 0.74 -1.2 225,169 - EX31_RS10075 0.74 -1.3 225,253 - EX31_RS10075 0.77 -1.1 225,266 + EX31_RS10075 0.78 -1.2 225,437 + EX31_RS10075 0.84 -2.1 225,437 + EX31_RS10075 0.84 +0.6 225,437 + EX31_RS10075 0.84 -0.4 225,438 - EX31_RS10075 0.84 -0.1 225,438 - EX31_RS10075 0.84 -0.2 225,481 - EX31_RS10075 0.86 -0.4 225,529 + EX31_RS10075 0.88 -0.6 225,530 - EX31_RS10075 0.88 -0.3 225,555 - EX31_RS10075 0.89 -1.7 225,727 - -2.6 225,765 - +0.7 225,768 + -0.1 225,768 + -2.0 225,768 + -0.2 225,768 + -1.2 225,768 + -2.7 225,768 + -0.8 225,768 + -0.8 225,768 + -0.8 225,768 + -0.7 225,769 - -2.2 225,769 - -0.7 225,769 - -1.1 225,771 + -1.6 225,783 + -1.4 225,784 - +0.1 225,796 + +0.9 225,797 - -1.4 225,797 - -3.6 225,865 + +0.5 225,866 - -0.4 225,872 - -1.0 225,924 - -0.3 225,950 + -0.7 225,951 - +0.4 225,969 - -0.0 225,978 + +0.3 225,978 + -1.0 225,979 - -1.0 225,979 - +0.6 225,979 - -0.1 226,020 - -0.1 226,020 - +0.2 226,027 - -0.5 226,085 - EX31_RS10080 0.19 -0.1 226,085 - EX31_RS10080 0.19 +0.5 226,085 - EX31_RS10080 0.19 +0.4 226,188 - EX31_RS10080 0.36 -0.4 226,188 - EX31_RS10080 0.36 +0.3 226,235 + EX31_RS10080 0.44 +0.6 226,243 + EX31_RS10080 0.45 +0.1 226,244 - EX31_RS10080 0.45 -0.8 226,391 + EX31_RS10080 0.70 -1.5 226,391 + EX31_RS10080 0.70 -0.8 226,391 + EX31_RS10080 0.70 -0.6 226,392 - EX31_RS10080 0.70 +0.4 226,392 - EX31_RS10080 0.70 -0.4 226,392 - EX31_RS10080 0.70 -1.3 226,500 - EX31_RS10080 0.88 +0.1 226,503 + EX31_RS10080 0.88 -1.5 226,504 - EX31_RS10080 0.88 +0.7 226,504 - EX31_RS10080 0.88 -0.5 226,504 - EX31_RS10080 0.88 +1.2 226,504 - EX31_RS10080 0.88 +0.2 226,504 - EX31_RS10080 0.88 -0.8 226,504 - EX31_RS10080 0.88 +1.0 226,506 - EX31_RS10080 0.89 +0.2 226,556 + -1.5 226,557 - +0.3 226,557 - -0.8 226,563 - +0.4 226,563 - +1.2 226,592 - +0.3 226,592 - +0.2 226,623 + +0.6 226,623 + +0.3 226,623 + -0.2 226,624 - -0.9 226,624 - -1.7 226,624 - +0.7 226,624 - -1.0 226,624 - +1.0 226,628 + -0.0 226,628 + +0.1 226,629 - +0.0 226,647 + +0.0 226,647 + +0.6 226,648 - -0.9 226,648 - -0.4 226,650 - +0.6 226,703 - -0.7 226,751 + +0.5 226,752 - +1.4 226,775 - -1.3 226,796 + +0.7 226,796 + +0.7 226,798 + +0.8 226,798 + -1.6 226,799 - -0.3 226,816 + +1.0
Or see this region's nucleotide sequence