Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10050 and EX31_RS10055 are separated by 20 nucleotides EX31_RS10055 and EX31_RS10060 are separated by 15 nucleotides EX31_RS10060 and EX31_RS10065 are separated by 187 nucleotides
EX31_RS10050: EX31_RS10050 - ABC transporter ATP-binding protein, at 216,121 to 217,137
_RS10050
EX31_RS10055: EX31_RS10055 - oligopeptide ABC transporter permease OppC, at 217,158 to 218,066
_RS10055
EX31_RS10060: EX31_RS10060 - oligopeptide ABC transporter permease OppB, at 218,082 to 219,002
_RS10060
EX31_RS10065: EX31_RS10065 - oligopeptide ABC transporter substrate-binding protein OppA, at 219,190 to 220,830
_RS10065
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.225 kb on - strand at 217.225 kb on - strand at 217.443 kb on - strand, within EX31_RS10055 at 217.443 kb on - strand, within EX31_RS10055 at 217.607 kb on + strand, within EX31_RS10055 at 217.719 kb on - strand, within EX31_RS10055 at 217.761 kb on - strand, within EX31_RS10055 at 217.761 kb on - strand, within EX31_RS10055 at 217.761 kb on - strand, within EX31_RS10055 at 217.761 kb on - strand, within EX31_RS10055 at 217.783 kb on - strand, within EX31_RS10055 at 217.783 kb on - strand, within EX31_RS10055 at 217.856 kb on + strand, within EX31_RS10055 at 217.856 kb on + strand, within EX31_RS10055 at 217.857 kb on - strand, within EX31_RS10055 at 217.914 kb on + strand, within EX31_RS10055 at 218.055 kb on - strand at 218.058 kb on + strand at 218.059 kb on - strand at 218.059 kb on - strand at 218.059 kb on - strand at 218.059 kb on - strand at 218.059 kb on - strand at 218.073 kb on - strand at 218.073 kb on - strand at 218.083 kb on + strand at 218.143 kb on - strand at 218.188 kb on + strand, within EX31_RS10060 at 218.299 kb on + strand, within EX31_RS10060 at 218.299 kb on + strand, within EX31_RS10060 at 218.299 kb on + strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.300 kb on - strand, within EX31_RS10060 at 218.327 kb on + strand, within EX31_RS10060 at 218.430 kb on - strand, within EX31_RS10060 at 218.438 kb on + strand, within EX31_RS10060 at 218.448 kb on - strand, within EX31_RS10060 at 218.450 kb on - strand, within EX31_RS10060 at 218.450 kb on - strand, within EX31_RS10060 at 218.450 kb on - strand, within EX31_RS10060 at 218.483 kb on + strand, within EX31_RS10060 at 218.484 kb on - strand, within EX31_RS10060 at 218.484 kb on - strand, within EX31_RS10060 at 218.529 kb on - strand, within EX31_RS10060 at 218.529 kb on - strand, within EX31_RS10060 at 218.545 kb on - strand, within EX31_RS10060 at 218.618 kb on - strand, within EX31_RS10060 at 218.687 kb on + strand, within EX31_RS10060 at 218.687 kb on + strand, within EX31_RS10060 at 218.688 kb on - strand, within EX31_RS10060 at 218.688 kb on - strand, within EX31_RS10060 at 218.752 kb on + strand, within EX31_RS10060 at 218.752 kb on + strand, within EX31_RS10060 at 218.753 kb on - strand, within EX31_RS10060 at 218.753 kb on - strand, within EX31_RS10060 at 218.759 kb on + strand, within EX31_RS10060 at 218.759 kb on + strand, within EX31_RS10060 at 218.760 kb on - strand, within EX31_RS10060 at 218.760 kb on - strand, within EX31_RS10060 at 218.760 kb on - strand, within EX31_RS10060 at 218.760 kb on - strand, within EX31_RS10060 at 218.761 kb on + strand, within EX31_RS10060 at 218.761 kb on + strand, within EX31_RS10060 at 218.762 kb on - strand, within EX31_RS10060 at 218.762 kb on - strand, within EX31_RS10060 at 218.762 kb on - strand, within EX31_RS10060 at 218.762 kb on - strand, within EX31_RS10060 at 218.762 kb on - strand, within EX31_RS10060 at 218.762 kb on - strand, within EX31_RS10060 at 218.803 kb on - strand, within EX31_RS10060 at 218.824 kb on + strand, within EX31_RS10060 at 218.824 kb on + strand, within EX31_RS10060 at 218.825 kb on - strand, within EX31_RS10060 at 218.825 kb on - strand, within EX31_RS10060 at 218.825 kb on - strand, within EX31_RS10060 at 218.825 kb on - strand, within EX31_RS10060 at 218.825 kb on - strand, within EX31_RS10060 at 218.825 kb on - strand, within EX31_RS10060 at 218.825 kb on - strand, within EX31_RS10060 at 218.846 kb on - strand, within EX31_RS10060 at 218.986 kb on - strand at 218.997 kb on + strand at 219.020 kb on - strand at 219.031 kb on + strand at 219.032 kb on - strand at 219.042 kb on - strand at 219.128 kb on + strand at 219.128 kb on + strand at 219.140 kb on + strand at 219.188 kb on - strand at 219.188 kb on - strand at 219.188 kb on - strand at 219.206 kb on + strand at 219.206 kb on + strand at 219.206 kb on + strand at 219.206 kb on + strand at 219.206 kb on + strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.207 kb on - strand at 219.208 kb on + strand at 219.208 kb on + strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.209 kb on - strand at 219.222 kb on - strand at 219.222 kb on - strand at 219.263 kb on + strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.290 kb on + strand at 219.290 kb on + strand at 219.290 kb on + strand at 219.291 kb on - strand at 219.293 kb on + strand at 219.294 kb on - strand at 219.294 kb on - strand at 219.296 kb on + strand at 219.297 kb on - strand at 219.297 kb on - strand at 219.348 kb on - strand at 219.421 kb on - strand, within EX31_RS10065 at 219.421 kb on - strand, within EX31_RS10065 at 219.421 kb on - strand, within EX31_RS10065 at 219.422 kb on + strand, within EX31_RS10065 at 219.423 kb on - strand, within EX31_RS10065 at 219.650 kb on + strand, within EX31_RS10065 at 219.651 kb on - strand, within EX31_RS10065 at 219.676 kb on - strand, within EX31_RS10065 at 219.676 kb on - strand, within EX31_RS10065 at 219.685 kb on - strand, within EX31_RS10065 at 219.686 kb on + strand, within EX31_RS10065 at 219.793 kb on - strand, within EX31_RS10065 at 219.801 kb on - strand, within EX31_RS10065 at 219.801 kb on - strand, within EX31_RS10065 at 219.801 kb on - strand, within EX31_RS10065 at 219.801 kb on - strand, within EX31_RS10065 at 219.826 kb on + strand, within EX31_RS10065 at 219.827 kb on - strand, within EX31_RS10065 at 219.924 kb on - strand, within EX31_RS10065 at 219.926 kb on + strand, within EX31_RS10065 at 219.926 kb on + strand, within EX31_RS10065 at 219.927 kb on - strand, within EX31_RS10065 at 219.927 kb on - strand, within EX31_RS10065
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 217,225 - +0.4 217,225 - +0.2 217,443 - EX31_RS10055 0.31 -0.8 217,443 - EX31_RS10055 0.31 +0.3 217,607 + EX31_RS10055 0.49 -2.5 217,719 - EX31_RS10055 0.62 -1.5 217,761 - EX31_RS10055 0.66 +0.4 217,761 - EX31_RS10055 0.66 +0.3 217,761 - EX31_RS10055 0.66 -0.6 217,761 - EX31_RS10055 0.66 +0.6 217,783 - EX31_RS10055 0.69 -0.3 217,783 - EX31_RS10055 0.69 +0.2 217,856 + EX31_RS10055 0.77 -1.4 217,856 + EX31_RS10055 0.77 +0.9 217,857 - EX31_RS10055 0.77 -2.0 217,914 + EX31_RS10055 0.83 -1.0 218,055 - -0.4 218,058 + -0.6 218,059 - -0.0 218,059 - -1.3 218,059 - +0.3 218,059 - +0.2 218,059 - +0.1 218,073 - -0.3 218,073 - -0.2 218,083 + -2.2 218,143 - -1.0 218,188 + EX31_RS10060 0.12 -0.3 218,299 + EX31_RS10060 0.24 +0.1 218,299 + EX31_RS10060 0.24 +0.5 218,299 + EX31_RS10060 0.24 -0.9 218,300 - EX31_RS10060 0.24 +1.8 218,300 - EX31_RS10060 0.24 +0.3 218,300 - EX31_RS10060 0.24 -0.3 218,300 - EX31_RS10060 0.24 +0.2 218,300 - EX31_RS10060 0.24 -1.9 218,300 - EX31_RS10060 0.24 -0.4 218,300 - EX31_RS10060 0.24 +0.6 218,300 - EX31_RS10060 0.24 +0.6 218,300 - EX31_RS10060 0.24 +1.0 218,327 + EX31_RS10060 0.27 +0.3 218,430 - EX31_RS10060 0.38 +0.1 218,438 + EX31_RS10060 0.39 +0.1 218,448 - EX31_RS10060 0.40 -0.8 218,450 - EX31_RS10060 0.40 -0.3 218,450 - EX31_RS10060 0.40 -0.9 218,450 - EX31_RS10060 0.40 -0.9 218,483 + EX31_RS10060 0.44 -0.4 218,484 - EX31_RS10060 0.44 +0.3 218,484 - EX31_RS10060 0.44 -0.1 218,529 - EX31_RS10060 0.49 -0.3 218,529 - EX31_RS10060 0.49 -0.6 218,545 - EX31_RS10060 0.50 +0.3 218,618 - EX31_RS10060 0.58 +0.4 218,687 + EX31_RS10060 0.66 +0.7 218,687 + EX31_RS10060 0.66 +0.3 218,688 - EX31_RS10060 0.66 +0.6 218,688 - EX31_RS10060 0.66 -0.2 218,752 + EX31_RS10060 0.73 +0.4 218,752 + EX31_RS10060 0.73 -0.6 218,753 - EX31_RS10060 0.73 +0.3 218,753 - EX31_RS10060 0.73 +0.2 218,759 + EX31_RS10060 0.74 -0.0 218,759 + EX31_RS10060 0.74 -0.0 218,760 - EX31_RS10060 0.74 -1.8 218,760 - EX31_RS10060 0.74 +1.2 218,760 - EX31_RS10060 0.74 -0.9 218,760 - EX31_RS10060 0.74 -0.9 218,761 + EX31_RS10060 0.74 -0.2 218,761 + EX31_RS10060 0.74 -0.5 218,762 - EX31_RS10060 0.74 -1.1 218,762 - EX31_RS10060 0.74 +1.6 218,762 - EX31_RS10060 0.74 +1.4 218,762 - EX31_RS10060 0.74 -1.2 218,762 - EX31_RS10060 0.74 -0.6 218,762 - EX31_RS10060 0.74 +0.6 218,803 - EX31_RS10060 0.78 -1.7 218,824 + EX31_RS10060 0.81 +0.7 218,824 + EX31_RS10060 0.81 -0.6 218,825 - EX31_RS10060 0.81 -0.1 218,825 - EX31_RS10060 0.81 -0.1 218,825 - EX31_RS10060 0.81 +1.4 218,825 - EX31_RS10060 0.81 +0.1 218,825 - EX31_RS10060 0.81 +0.2 218,825 - EX31_RS10060 0.81 -0.9 218,825 - EX31_RS10060 0.81 +0.6 218,846 - EX31_RS10060 0.83 -1.8 218,986 - +0.8 218,997 + +0.1 219,020 - -0.0 219,031 + -0.8 219,032 - +0.1 219,042 - +0.8 219,128 + +0.7 219,128 + +0.6 219,140 + +0.2 219,188 - +0.4 219,188 - -0.6 219,188 - -1.7 219,206 + -1.0 219,206 + -1.4 219,206 + +0.1 219,206 + -0.4 219,206 + -1.4 219,207 - +1.0 219,207 - +0.3 219,207 - +2.3 219,207 - -0.5 219,207 - -0.6 219,207 - -0.0 219,207 - +0.2 219,207 - -0.1 219,207 - -1.4 219,207 - -0.0 219,207 - -0.0 219,207 - +0.8 219,207 - +0.3 219,207 - -1.7 219,207 - +0.1 219,207 - +0.5 219,207 - -0.2 219,208 + +0.2 219,208 + -0.2 219,209 - +1.0 219,209 - +1.2 219,209 - +0.1 219,209 - -1.0 219,209 - -0.2 219,209 - +0.1 219,209 - +0.1 219,209 - -0.2 219,209 - +0.1 219,209 - -1.4 219,209 - +0.0 219,222 - +0.9 219,222 - -0.4 219,263 + +0.7 219,264 - +0.2 219,264 - +0.1 219,264 - -0.3 219,264 - -0.6 219,264 - -0.1 219,264 - +0.2 219,264 - +0.4 219,264 - +0.6 219,264 - +0.4 219,290 + +0.1 219,290 + -0.8 219,290 + -0.9 219,291 - +1.2 219,293 + -0.1 219,294 - -0.4 219,294 - +1.4 219,296 + +0.3 219,297 - -0.6 219,297 - -0.3 219,348 - +0.4 219,421 - EX31_RS10065 0.14 +0.2 219,421 - EX31_RS10065 0.14 -0.4 219,421 - EX31_RS10065 0.14 +0.3 219,422 + EX31_RS10065 0.14 +0.0 219,423 - EX31_RS10065 0.14 -0.4 219,650 + EX31_RS10065 0.28 -0.3 219,651 - EX31_RS10065 0.28 -0.7 219,676 - EX31_RS10065 0.30 -1.3 219,676 - EX31_RS10065 0.30 +0.2 219,685 - EX31_RS10065 0.30 +0.7 219,686 + EX31_RS10065 0.30 -1.0 219,793 - EX31_RS10065 0.37 +0.3 219,801 - EX31_RS10065 0.37 -0.3 219,801 - EX31_RS10065 0.37 +0.6 219,801 - EX31_RS10065 0.37 -0.5 219,801 - EX31_RS10065 0.37 -0.6 219,826 + EX31_RS10065 0.39 +0.1 219,827 - EX31_RS10065 0.39 +0.3 219,924 - EX31_RS10065 0.45 -1.2 219,926 + EX31_RS10065 0.45 -0.7 219,926 + EX31_RS10065 0.45 -0.2 219,927 - EX31_RS10065 0.45 -0.4 219,927 - EX31_RS10065 0.45 -0.5
Or see this region's nucleotide sequence