Strain Fitness in Rahnella sp. WP5 around EX31_RS07245

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07235 and EX31_RS07240 overlap by 4 nucleotidesEX31_RS07240 and EX31_RS07245 overlap by 1 nucleotidesEX31_RS07245 and EX31_RS07250 overlap by 4 nucleotidesEX31_RS07250 and EX31_RS07255 are separated by 83 nucleotides EX31_RS07235: EX31_RS07235 - ABC transporter permease, at 247,149 to 248,162 _RS07235 EX31_RS07240: EX31_RS07240 - ABC transporter permease, at 248,159 to 249,085 _RS07240 EX31_RS07245: EX31_RS07245 - ABC transporter ATP-binding protein, at 249,085 to 249,915 _RS07245 EX31_RS07250: EX31_RS07250 - ABC transporter ATP-binding protein, at 249,912 to 250,685 _RS07250 EX31_RS07255: EX31_RS07255 - serine hydrolase, at 250,769 to 252,322 _RS07255 Position (kb) 249 250Strain fitness (log2 ratio) -1 0 1 2at 248.100 kb on + strandat 248.101 kb on - strandat 248.101 kb on - strandat 248.179 kb on - strandat 248.314 kb on + strand, within EX31_RS07240at 248.366 kb on + strand, within EX31_RS07240at 248.367 kb on - strand, within EX31_RS07240at 248.367 kb on - strand, within EX31_RS07240at 248.482 kb on + strand, within EX31_RS07240at 248.482 kb on + strand, within EX31_RS07240at 248.483 kb on - strand, within EX31_RS07240at 248.483 kb on - strand, within EX31_RS07240at 248.504 kb on - strand, within EX31_RS07240at 248.581 kb on + strand, within EX31_RS07240at 248.711 kb on + strand, within EX31_RS07240at 248.737 kb on + strand, within EX31_RS07240at 248.738 kb on - strand, within EX31_RS07240at 248.738 kb on - strand, within EX31_RS07240at 248.815 kb on + strand, within EX31_RS07240at 248.879 kb on - strand, within EX31_RS07240at 248.908 kb on + strand, within EX31_RS07240at 248.909 kb on - strand, within EX31_RS07240at 249.096 kb on + strandat 249.111 kb on + strandat 249.111 kb on + strandat 249.114 kb on + strandat 249.114 kb on + strandat 249.115 kb on - strandat 249.350 kb on + strand, within EX31_RS07245at 249.406 kb on - strand, within EX31_RS07245at 249.406 kb on - strand, within EX31_RS07245at 249.435 kb on + strand, within EX31_RS07245at 249.564 kb on - strand, within EX31_RS07245at 249.678 kb on - strand, within EX31_RS07245at 249.761 kb on - strand, within EX31_RS07245at 249.761 kb on - strand, within EX31_RS07245at 249.820 kb on + strand, within EX31_RS07245at 249.949 kb on + strandat 249.949 kb on + strandat 250.183 kb on + strand, within EX31_RS07250at 250.183 kb on + strand, within EX31_RS07250at 250.198 kb on - strand, within EX31_RS07250at 250.283 kb on + strand, within EX31_RS07250at 250.506 kb on + strand, within EX31_RS07250at 250.506 kb on + strand, within EX31_RS07250at 250.506 kb on + strand, within EX31_RS07250at 250.507 kb on - strand, within EX31_RS07250at 250.507 kb on - strand, within EX31_RS07250at 250.507 kb on - strand, within EX31_RS07250at 250.507 kb on - strand, within EX31_RS07250at 250.507 kb on - strand, within EX31_RS07250at 250.507 kb on - strand, within EX31_RS07250at 250.508 kb on + strand, within EX31_RS07250at 250.509 kb on - strand, within EX31_RS07250at 250.538 kb on - strand, within EX31_RS07250at 250.609 kb on + strandat 250.610 kb on - strandat 250.610 kb on - strandat 250.648 kb on + strandat 250.657 kb on + strandat 250.657 kb on + strandat 250.657 kb on + strandat 250.658 kb on - strandat 250.658 kb on - strandat 250.704 kb on + strandat 250.704 kb on + strandat 250.705 kb on - strandat 250.795 kb on - strandat 250.835 kb on - strandat 250.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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248,100 + +0.7
248,101 - -0.5
248,101 - -0.2
248,179 - +0.2
248,314 + EX31_RS07240 0.17 +1.1
248,366 + EX31_RS07240 0.22 -0.8
248,367 - EX31_RS07240 0.22 +0.0
248,367 - EX31_RS07240 0.22 -0.2
248,482 + EX31_RS07240 0.35 -0.8
248,482 + EX31_RS07240 0.35 -0.5
248,483 - EX31_RS07240 0.35 +0.5
248,483 - EX31_RS07240 0.35 +0.3
248,504 - EX31_RS07240 0.37 +0.4
248,581 + EX31_RS07240 0.46 -0.0
248,711 + EX31_RS07240 0.60 -0.0
248,737 + EX31_RS07240 0.62 -0.2
248,738 - EX31_RS07240 0.62 +0.1
248,738 - EX31_RS07240 0.62 +0.3
248,815 + EX31_RS07240 0.71 +0.4
248,879 - EX31_RS07240 0.78 +0.7
248,908 + EX31_RS07240 0.81 -0.1
248,909 - EX31_RS07240 0.81 -0.1
249,096 + -0.2
249,111 + -0.7
249,111 + +0.1
249,114 + +1.1
249,114 + -0.2
249,115 - -0.0
249,350 + EX31_RS07245 0.32 -0.3
249,406 - EX31_RS07245 0.39 -0.9
249,406 - EX31_RS07245 0.39 +0.4
249,435 + EX31_RS07245 0.42 -0.1
249,564 - EX31_RS07245 0.58 +0.9
249,678 - EX31_RS07245 0.71 +0.5
249,761 - EX31_RS07245 0.81 -0.2
249,761 - EX31_RS07245 0.81 +1.1
249,820 + EX31_RS07245 0.88 +0.7
249,949 + +0.9
249,949 + +0.1
250,183 + EX31_RS07250 0.35 +0.3
250,183 + EX31_RS07250 0.35 +1.8
250,198 - EX31_RS07250 0.37 +0.4
250,283 + EX31_RS07250 0.48 +1.0
250,506 + EX31_RS07250 0.77 -0.1
250,506 + EX31_RS07250 0.77 -0.7
250,506 + EX31_RS07250 0.77 +0.1
250,507 - EX31_RS07250 0.77 +1.9
250,507 - EX31_RS07250 0.77 -0.0
250,507 - EX31_RS07250 0.77 -0.7
250,507 - EX31_RS07250 0.77 +0.5
250,507 - EX31_RS07250 0.77 +0.4
250,507 - EX31_RS07250 0.77 +0.5
250,508 + EX31_RS07250 0.77 -0.7
250,509 - EX31_RS07250 0.77 +0.8
250,538 - EX31_RS07250 0.81 -1.0
250,609 + +0.7
250,610 - +1.5
250,610 - -0.5
250,648 + -0.5
250,657 + -0.1
250,657 + +0.1
250,657 + -0.7
250,658 - -1.0
250,658 - -1.5
250,704 + +0.2
250,704 + +0.5
250,705 - -0.4
250,795 - +0.6
250,835 - +0.8
250,888 + +0.8

Or see this region's nucleotide sequence