Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21530 and EX31_RS21535 are separated by 21 nucleotides EX31_RS21535 and EX31_RS21540 are separated by 2 nucleotides
EX31_RS21530: EX31_RS21530 - DeoR/GlpR transcriptional regulator, at 51,249 to 52,106
_RS21530
EX31_RS21535: EX31_RS21535 - autoinducer 2 ABC transporter substrate-binding protein, at 52,128 to 53,111
_RS21535
EX31_RS21540: EX31_RS21540 - sugar ABC transporter ATP-binding protein, at 53,114 to 54,646
_RS21540
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 51.137 kb on + strand at 51.137 kb on + strand at 51.137 kb on + strand at 51.137 kb on + strand at 51.137 kb on + strand at 51.137 kb on + strand at 51.137 kb on + strand at 51.137 kb on + strand at 51.137 kb on + strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.138 kb on - strand at 51.220 kb on - strand at 51.220 kb on - strand at 51.273 kb on + strand at 51.273 kb on + strand at 51.273 kb on + strand at 51.273 kb on + strand at 51.273 kb on + strand at 51.273 kb on + strand at 51.274 kb on - strand at 51.274 kb on - strand at 51.274 kb on - strand at 51.274 kb on - strand at 51.275 kb on + strand at 51.275 kb on + strand at 51.275 kb on + strand at 51.275 kb on + strand at 51.275 kb on + strand at 51.276 kb on - strand at 51.276 kb on - strand at 51.276 kb on - strand at 51.276 kb on - strand at 51.276 kb on - strand at 51.276 kb on - strand at 51.331 kb on + strand at 51.332 kb on - strand at 51.332 kb on - strand at 51.422 kb on + strand, within EX31_RS21530 at 51.423 kb on - strand, within EX31_RS21530 at 51.423 kb on - strand, within EX31_RS21530 at 51.450 kb on + strand, within EX31_RS21530 at 51.450 kb on + strand, within EX31_RS21530 at 51.681 kb on - strand, within EX31_RS21530 at 51.681 kb on - strand, within EX31_RS21530 at 51.712 kb on - strand, within EX31_RS21530 at 51.712 kb on - strand, within EX31_RS21530 at 51.723 kb on + strand, within EX31_RS21530 at 51.723 kb on + strand, within EX31_RS21530 at 51.723 kb on + strand, within EX31_RS21530 at 51.723 kb on + strand, within EX31_RS21530 at 51.723 kb on + strand, within EX31_RS21530 at 51.724 kb on - strand, within EX31_RS21530 at 51.724 kb on - strand, within EX31_RS21530 at 51.724 kb on - strand, within EX31_RS21530 at 51.724 kb on - strand, within EX31_RS21530 at 52.064 kb on + strand at 52.088 kb on - strand at 52.100 kb on + strand at 52.100 kb on + strand at 52.100 kb on + strand at 52.100 kb on + strand at 52.100 kb on + strand at 52.100 kb on + strand at 52.101 kb on - strand at 52.101 kb on - strand at 52.101 kb on - strand at 52.101 kb on - strand at 52.101 kb on - strand at 52.101 kb on - strand at 52.101 kb on - strand at 52.101 kb on - strand at 52.120 kb on + strand at 52.333 kb on + strand, within EX31_RS21535 at 52.482 kb on + strand, within EX31_RS21535 at 52.482 kb on + strand, within EX31_RS21535 at 52.482 kb on + strand, within EX31_RS21535 at 52.529 kb on + strand, within EX31_RS21535 at 52.529 kb on + strand, within EX31_RS21535 at 52.576 kb on - strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.584 kb on + strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.585 kb on - strand, within EX31_RS21535 at 52.642 kb on - strand, within EX31_RS21535 at 53.078 kb on + strand at 53.079 kb on - strand at 53.079 kb on - strand at 53.079 kb on - strand at 53.109 kb on + strand at 53.109 kb on + strand at 53.109 kb on + strand at 53.109 kb on + strand at 53.110 kb on - strand at 53.110 kb on - strand at 53.110 kb on - strand at 53.110 kb on - strand at 53.304 kb on - strand, within EX31_RS21540 at 53.304 kb on - strand, within EX31_RS21540 at 53.414 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.478 kb on + strand, within EX31_RS21540 at 53.479 kb on - strand, within EX31_RS21540 at 53.479 kb on - strand, within EX31_RS21540 at 53.479 kb on - strand, within EX31_RS21540 at 53.499 kb on - strand, within EX31_RS21540 at 53.552 kb on + strand, within EX31_RS21540 at 53.552 kb on + strand, within EX31_RS21540 at 53.553 kb on - strand, within EX31_RS21540 at 53.647 kb on - strand, within EX31_RS21540 at 53.653 kb on + strand, within EX31_RS21540 at 53.654 kb on - strand, within EX31_RS21540 at 53.967 kb on - strand, within EX31_RS21540 at 54.012 kb on + strand, within EX31_RS21540 at 54.111 kb on + strand, within EX31_RS21540
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 51,137 + -1.0 51,137 + +0.3 51,137 + +0.5 51,137 + -0.3 51,137 + -0.1 51,137 + +0.2 51,137 + +0.7 51,137 + -0.2 51,137 + -0.2 51,138 - +0.6 51,138 - -0.2 51,138 - +0.1 51,138 - -0.6 51,138 - +0.2 51,138 - +0.3 51,138 - -0.2 51,138 - -0.3 51,138 - +0.1 51,220 - +0.2 51,220 - +0.4 51,273 + -0.9 51,273 + +0.5 51,273 + -0.7 51,273 + -0.4 51,273 + -0.3 51,273 + -0.4 51,274 - -0.3 51,274 - -0.3 51,274 - +0.5 51,274 - -0.4 51,275 + -0.9 51,275 + -0.7 51,275 + +0.6 51,275 + +0.4 51,275 + +0.2 51,276 - +0.1 51,276 - +1.2 51,276 - +0.2 51,276 - +0.4 51,276 - +0.8 51,276 - -0.5 51,331 + +0.1 51,332 - -0.2 51,332 - -0.6 51,422 + EX31_RS21530 0.20 +1.0 51,423 - EX31_RS21530 0.20 -1.4 51,423 - EX31_RS21530 0.20 -0.9 51,450 + EX31_RS21530 0.23 -0.1 51,450 + EX31_RS21530 0.23 -0.7 51,681 - EX31_RS21530 0.50 -0.2 51,681 - EX31_RS21530 0.50 -1.3 51,712 - EX31_RS21530 0.54 -0.2 51,712 - EX31_RS21530 0.54 +1.2 51,723 + EX31_RS21530 0.55 +1.0 51,723 + EX31_RS21530 0.55 +1.6 51,723 + EX31_RS21530 0.55 -2.5 51,723 + EX31_RS21530 0.55 -0.1 51,723 + EX31_RS21530 0.55 +0.1 51,724 - EX31_RS21530 0.55 -1.8 51,724 - EX31_RS21530 0.55 +1.3 51,724 - EX31_RS21530 0.55 -2.0 51,724 - EX31_RS21530 0.55 +1.0 52,064 + +1.0 52,088 - +0.2 52,100 + -0.1 52,100 + +0.7 52,100 + +0.2 52,100 + +0.2 52,100 + -1.4 52,100 + -0.1 52,101 - +0.6 52,101 - -0.6 52,101 - -1.1 52,101 - +0.4 52,101 - -0.7 52,101 - -0.8 52,101 - +0.4 52,101 - +0.2 52,120 + -0.0 52,333 + EX31_RS21535 0.21 -0.5 52,482 + EX31_RS21535 0.36 -0.6 52,482 + EX31_RS21535 0.36 +0.3 52,482 + EX31_RS21535 0.36 -0.0 52,529 + EX31_RS21535 0.41 -1.1 52,529 + EX31_RS21535 0.41 -0.1 52,576 - EX31_RS21535 0.46 -2.3 52,584 + EX31_RS21535 0.46 +0.6 52,584 + EX31_RS21535 0.46 -1.8 52,584 + EX31_RS21535 0.46 -0.3 52,584 + EX31_RS21535 0.46 -0.4 52,584 + EX31_RS21535 0.46 -1.2 52,584 + EX31_RS21535 0.46 -1.1 52,584 + EX31_RS21535 0.46 -0.9 52,584 + EX31_RS21535 0.46 +0.2 52,584 + EX31_RS21535 0.46 -0.5 52,585 - EX31_RS21535 0.46 +1.2 52,585 - EX31_RS21535 0.46 +0.9 52,585 - EX31_RS21535 0.46 -1.4 52,585 - EX31_RS21535 0.46 -1.7 52,585 - EX31_RS21535 0.46 -0.9 52,585 - EX31_RS21535 0.46 +0.4 52,585 - EX31_RS21535 0.46 -0.8 52,585 - EX31_RS21535 0.46 -0.1 52,585 - EX31_RS21535 0.46 -0.7 52,642 - EX31_RS21535 0.52 +0.4 53,078 + -0.3 53,079 - -0.1 53,079 - +0.2 53,079 - -0.8 53,109 + -0.3 53,109 + -1.0 53,109 + -0.6 53,109 + +0.1 53,110 - +0.5 53,110 - -0.4 53,110 - -3.3 53,110 - -0.9 53,304 - EX31_RS21540 0.12 -1.8 53,304 - EX31_RS21540 0.12 +0.6 53,414 + EX31_RS21540 0.20 +0.7 53,478 + EX31_RS21540 0.24 +0.1 53,478 + EX31_RS21540 0.24 -0.2 53,478 + EX31_RS21540 0.24 +0.0 53,478 + EX31_RS21540 0.24 +0.6 53,478 + EX31_RS21540 0.24 -0.1 53,478 + EX31_RS21540 0.24 +0.1 53,478 + EX31_RS21540 0.24 +0.1 53,478 + EX31_RS21540 0.24 -0.1 53,479 - EX31_RS21540 0.24 -0.4 53,479 - EX31_RS21540 0.24 -0.4 53,479 - EX31_RS21540 0.24 -0.2 53,499 - EX31_RS21540 0.25 +0.4 53,552 + EX31_RS21540 0.29 +0.4 53,552 + EX31_RS21540 0.29 +0.5 53,553 - EX31_RS21540 0.29 +0.7 53,647 - EX31_RS21540 0.35 +0.0 53,653 + EX31_RS21540 0.35 -0.1 53,654 - EX31_RS21540 0.35 +0.6 53,967 - EX31_RS21540 0.56 +0.7 54,012 + EX31_RS21540 0.59 +1.1 54,111 + EX31_RS21540 0.65 -0.4
Or see this region's nucleotide sequence