Strain Fitness in Rahnella sp. WP5 around EX31_RS13545

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
142,098	+		EX31_RS13540	0.64	+0.8
142,216	+		EX31_RS13540	0.69	-0.8
142,216	+		EX31_RS13540	0.69	+0.4
142,216	+		EX31_RS13540	0.69	+0.7
142,216	+		EX31_RS13540	0.69	-0.9
142,216	+		EX31_RS13540	0.69	-0.3
142,216	+		EX31_RS13540	0.69	+0.0
142,216	+		EX31_RS13540	0.69	-1.2
142,216	+		EX31_RS13540	0.69	+0.0
142,216	+		EX31_RS13540	0.69	+0.6
142,216	+		EX31_RS13540	0.69	-0.6
142,216	+		EX31_RS13540	0.69	+0.0
142,216	+		EX31_RS13540	0.69	+0.0
142,217	-		EX31_RS13540	0.69	+0.7
142,217	-		EX31_RS13540	0.69	+1.0
142,217	-		EX31_RS13540	0.69	-0.1
142,217	-		EX31_RS13540	0.69	-0.6
142,217	-		EX31_RS13540	0.69	-1.1
142,217	-		EX31_RS13540	0.69	-0.1
142,217	-		EX31_RS13540	0.69	+0.0
142,217	-		EX31_RS13540	0.69	+0.4
142,217	-		EX31_RS13540	0.69	+0.1
142,275	-		EX31_RS13540	0.71	-0.4
142,368	+		EX31_RS13540	0.74	-0.1
142,368	+		EX31_RS13540	0.74	+0.1
142,369	-		EX31_RS13540	0.74	-0.3
142,441	+		EX31_RS13540	0.77	+0.2
142,441	+		EX31_RS13540	0.77	+0.4
142,441	+		EX31_RS13540	0.77	-0.2
142,442	-		EX31_RS13540	0.77	+0.0
142,442	-		EX31_RS13540	0.77	-0.0
142,442	-		EX31_RS13540	0.77	-0.4
142,442	-		EX31_RS13540	0.77	-0.0
142,442	-		EX31_RS13540	0.77	-0.0
142,442	-		EX31_RS13540	0.77	-0.4
142,446	-		EX31_RS13540	0.77	-0.1
142,446	-		EX31_RS13540	0.77	+0.7
142,482	+		EX31_RS13540	0.79	-0.1
142,483	-		EX31_RS13540	0.79	-0.4
142,483	-		EX31_RS13540	0.79	+1.0
142,486	+		EX31_RS13540	0.79	+0.1
142,486	+		EX31_RS13540	0.79	-0.0
142,487	-		EX31_RS13540	0.79	-0.2
142,487	-		EX31_RS13540	0.79	+0.4
142,487	-		EX31_RS13540	0.79	-0.8
142,545	-		EX31_RS13540	0.81	-0.8
142,637	+		EX31_RS13540	0.85	+1.2
142,637	+		EX31_RS13540	0.85	-0.6
142,644	+		EX31_RS13540	0.85	+0.1
142,645	-		EX31_RS13540	0.85	-0.2
142,679	-		EX31_RS13540	0.86	-0.2
142,679	-		EX31_RS13540	0.86	-1.4
142,726	+		EX31_RS13540	0.88	+0.2
142,726	+		EX31_RS13540	0.88	-0.8
142,726	+		EX31_RS13540	0.88	-0.2
142,727	-		EX31_RS13540	0.88	+0.6
142,727	-		EX31_RS13540	0.88	+0.4
142,727	-		EX31_RS13540	0.88	+0.0
142,781	+				-0.1
142,781	+				-0.1
142,782	-				+0.1
142,782	-				+0.0
142,783	+				+2.2
142,783	+				-2.4
142,783	+				+1.6
142,784	-				-0.0
142,861	+				-0.6
142,862	-				+0.8
142,862	-				-0.5
142,862	-				-1.1
142,897	+				-0.2
142,897	+				+0.5
142,897	+				-1.2
142,897	+				+0.9
142,897	+				-1.3
142,898	-				+1.5
142,898	-				+0.3
142,898	-				-0.1
142,898	-				-1.0
142,987	+				-0.0
142,987	+				-0.2
142,988	-				-0.0
142,988	-				-0.6
142,988	-				+0.6
143,009	+				+0.6
143,042	+				-0.5
143,043	-				+0.7
143,043	-				-0.3
143,084	-				+0.0
143,111	+				+0.1
143,112	-				+0.7
143,112	-				-0.5
143,132	+				-0.3
143,133	-				-0.1
143,133	-				+0.2
143,167	+				-0.1
143,167	+				-0.0
143,229	-				+0.3
143,229	-				+0.0
143,449	+		EX31_RS13545	0.18	-1.0
143,450	-		EX31_RS13545	0.19	+0.2
143,488	+		EX31_RS13545	0.20	+0.1
143,489	-		EX31_RS13545	0.21	+0.9
143,526	+		EX31_RS13545	0.22	-0.0
143,571	+		EX31_RS13545	0.25	-0.4
143,572	-		EX31_RS13545	0.25	+0.0
143,614	+		EX31_RS13545	0.27	-0.2
143,614	+		EX31_RS13545	0.27	+0.0
143,614	+		EX31_RS13545	0.27	+0.1
143,614	+		EX31_RS13545	0.27	+0.2
143,614	+		EX31_RS13545	0.27	+0.1
143,615	-		EX31_RS13545	0.27	+0.8
143,615	-		EX31_RS13545	0.27	+0.4
143,615	-		EX31_RS13545	0.27	+0.1
143,615	-		EX31_RS13545	0.27	+0.8
143,615	-		EX31_RS13545	0.27	+0.1
143,615	-		EX31_RS13545	0.27	+0.1
143,615	-		EX31_RS13545	0.27	+0.5
143,686	+		EX31_RS13545	0.31	-0.1
143,766	+		EX31_RS13545	0.35	+0.2
143,766	+		EX31_RS13545	0.35	-0.4
143,766	+		EX31_RS13545	0.35	+0.1
143,767	-		EX31_RS13545	0.35	+0.0
143,767	-		EX31_RS13545	0.35	-0.3
143,767	-		EX31_RS13545	0.35	-0.1
143,833	-		EX31_RS13545	0.38	+0.2
143,953	-		EX31_RS13545	0.45	+0.0
143,953	-		EX31_RS13545	0.45	+0.1
143,980	+		EX31_RS13545	0.46	-1.2
144,009	+		EX31_RS13545	0.47	+0.5
144,009	+		EX31_RS13545	0.47	-0.3
144,009	+		EX31_RS13545	0.47	-0.5
144,009	+		EX31_RS13545	0.47	+0.3
144,010	-		EX31_RS13545	0.48	-0.4
144,010	-		EX31_RS13545	0.48	+0.0
144,010	-		EX31_RS13545	0.48	+0.1
144,116	+		EX31_RS13545	0.53	+0.4
144,116	+		EX31_RS13545	0.53	-0.0
144,153	-		EX31_RS13545	0.55	-0.5
144,224	+		EX31_RS13545	0.59	+1.0
144,472	+		EX31_RS13545	0.71	+0.7
144,472	+		EX31_RS13545	0.71	-0.0
144,472	+		EX31_RS13545	0.71	-1.3
144,472	+		EX31_RS13545	0.71	-0.5
144,472	+		EX31_RS13545	0.71	-0.3
144,472	+		EX31_RS13545	0.71	-0.4
144,473	-		EX31_RS13545	0.72	-0.6
144,473	-		EX31_RS13545	0.72	+0.6
144,473	-		EX31_RS13545	0.72	+0.6
144,473	-		EX31_RS13545	0.72	-0.4
144,473	-		EX31_RS13545	0.72	-0.3
144,473	-		EX31_RS13545	0.72	+0.4
144,474	+		EX31_RS13545	0.72	+0.5
144,474	+		EX31_RS13545	0.72	-0.2
144,474	+		EX31_RS13545	0.72	-1.3
144,474	+		EX31_RS13545	0.72	+0.4
144,474	+		EX31_RS13545	0.72	-0.9
144,474	+		EX31_RS13545	0.72	-1.7
144,474	+		EX31_RS13545	0.72	+0.0
144,474	+		EX31_RS13545	0.72	-0.3
144,474	+		EX31_RS13545	0.72	-0.6
144,474	+		EX31_RS13545	0.72	+0.6
144,474	+		EX31_RS13545	0.72	+0.2
144,474	+		EX31_RS13545	0.72	-0.4
144,474	+		EX31_RS13545	0.72	-0.2
144,474	+		EX31_RS13545	0.72	+0.0
144,474	+		EX31_RS13545	0.72	-0.8
144,474	+		EX31_RS13545	0.72	+0.5
144,474	+		EX31_RS13545	0.72	-0.2
144,474	+		EX31_RS13545	0.72	+0.0
144,474	+		EX31_RS13545	0.72	-0.5
144,474	+		EX31_RS13545	0.72	+0.3
144,474	+		EX31_RS13545	0.72	-0.4
144,474	+		EX31_RS13545	0.72	+0.8
144,474	+		EX31_RS13545	0.72	-0.1
144,474	+		EX31_RS13545	0.72	+0.6
144,474	+		EX31_RS13545	0.72	+0.5
144,474	+		EX31_RS13545	0.72	-0.1
144,474	+		EX31_RS13545	0.72	+1.1
144,474	+		EX31_RS13545	0.72	-0.1
144,474	+		EX31_RS13545	0.72	+0.1
144,474	+		EX31_RS13545	0.72	+0.2
144,474	+		EX31_RS13545	0.72	-0.2
144,475	-		EX31_RS13545	0.72	-0.5
144,475	-		EX31_RS13545	0.72	+0.1
144,475	-		EX31_RS13545	0.72	-0.3
144,475	-		EX31_RS13545	0.72	+0.4
144,475	-		EX31_RS13545	0.72	+0.6
144,475	-		EX31_RS13545	0.72	+0.9
144,475	-		EX31_RS13545	0.72	-0.0
144,475	-		EX31_RS13545	0.72	+0.5
144,475	-		EX31_RS13545	0.72	+0.2
144,475	-		EX31_RS13545	0.72	-0.2
144,475	-		EX31_RS13545	0.72	+0.0
144,475	-		EX31_RS13545	0.72	+0.9
144,475	-		EX31_RS13545	0.72	+0.1
144,475	-		EX31_RS13545	0.72	+0.9
144,475	-		EX31_RS13545	0.72	+0.4
144,475	-		EX31_RS13545	0.72	-0.0
144,475	-		EX31_RS13545	0.72	+0.2
144,475	-		EX31_RS13545	0.72	+0.0
144,475	-		EX31_RS13545	0.72	+0.5
144,475	-		EX31_RS13545	0.72	+0.1
144,475	-		EX31_RS13545	0.72	+0.3
144,581	+		EX31_RS13545	0.77	+0.3
144,668	+		EX31_RS13545	0.82	-1.3
144,669	-		EX31_RS13545	0.82	+0.1
144,724	+		EX31_RS13545	0.85	+0.2
144,724	+		EX31_RS13545	0.85	+0.3
144,724	+		EX31_RS13545	0.85	+0.7
144,725	-		EX31_RS13545	0.85	+0.0
144,759	-		EX31_RS13545	0.86	+0.1
144,759	-		EX31_RS13545	0.86	-0.6
144,818	-		EX31_RS13545	0.89	+0.0
144,986	+				-2.9
144,986	+				+0.0
144,987	-				+0.2
144,987	-				+0.3
145,021	+				+0.1
145,021	+				-0.8
145,045	+				-0.1
145,045	+				-0.1
145,046	-				-1.0
145,122	+				-0.7
145,144	+				+0.6
145,144	+				+0.6
145,145	-				-0.2
145,145	-				+0.5
145,172	+				-0.6
145,172	+				-0.0
145,172	+				-0.2
145,172	+				+0.1
145,173	-				+0.8
145,173	-				-0.7
145,173	-				-0.6
145,173	-				-0.4
145,173	-				+0.0
145,173	-				+0.0
145,173	-				-0.3
145,214	+				-0.1
145,214	+				+0.1
145,228	-				+0.9
145,345	+		EX31_RS13550	0.19	-0.7
145,345	+		EX31_RS13550	0.19	+0.3
145,345	+		EX31_RS13550	0.19	+0.6
145,346	-		EX31_RS13550	0.19	-0.5
145,358	+		EX31_RS13550	0.21	+0.1
145,358	+		EX31_RS13550	0.21	+0.7
145,359	-		EX31_RS13550	0.21	-1.8
145,359	-		EX31_RS13550	0.21	+0.1
145,359	-		EX31_RS13550	0.21	-0.2
145,359	-		EX31_RS13550	0.21	-1.2
145,359	-		EX31_RS13550	0.21	-1.2
145,359	-		EX31_RS13550	0.21	+0.4
145,381	+		EX31_RS13550	0.24	-0.1
145,381	+		EX31_RS13550	0.24	+0.5
145,382	-		EX31_RS13550	0.24	-0.6
145,382	-		EX31_RS13550	0.24	+0.5
145,382	-		EX31_RS13550	0.24	-0.5
145,410	+		EX31_RS13550	0.28	+0.1
145,410	+		EX31_RS13550	0.28	+0.1
145,410	+		EX31_RS13550	0.28	+0.0
145,410	+		EX31_RS13550	0.28	-0.1
145,411	-		EX31_RS13550	0.28	+0.6
145,411	-		EX31_RS13550	0.28	+0.3
145,434	+		EX31_RS13550	0.31	-0.4
145,439	+		EX31_RS13550	0.32	+0.7
145,439	+		EX31_RS13550	0.32	-0.7
145,439	+		EX31_RS13550	0.32	-0.5
145,439	+		EX31_RS13550	0.32	+0.2
145,440	-		EX31_RS13550	0.32	-0.4
145,440	-		EX31_RS13550	0.32	-0.8
145,440	-		EX31_RS13550	0.32	+0.2
145,443	+		EX31_RS13550	0.33	-0.2
145,444	-		EX31_RS13550	0.33	-0.9
145,484	+		EX31_RS13550	0.38	+0.4
145,485	-		EX31_RS13550	0.38	-0.5
145,578	+		EX31_RS13550	0.51	+0.6
145,578	+		EX31_RS13550	0.51	-0.6
145,578	+		EX31_RS13550	0.51	-0.1
145,578	+		EX31_RS13550	0.51	+1.2
145,578	+		EX31_RS13550	0.51	+0.0
145,578	+		EX31_RS13550	0.51	+0.4
145,578	+		EX31_RS13550	0.51	-0.4
145,579	-		EX31_RS13550	0.51	+0.4
145,581	+		EX31_RS13550	0.52	-0.1
145,581	+		EX31_RS13550	0.52	+0.2
145,581	+		EX31_RS13550	0.52	+0.3
145,581	+		EX31_RS13550	0.52	-0.1
145,581	+		EX31_RS13550	0.52	+1.2
145,581	+		EX31_RS13550	0.52	-0.3
145,581	+		EX31_RS13550	0.52	+0.3
145,581	+		EX31_RS13550	0.52	-0.1
145,581	+		EX31_RS13550	0.52	+0.4
145,581	+		EX31_RS13550	0.52	+0.2
145,581	+		EX31_RS13550	0.52	+0.2
145,581	+		EX31_RS13550	0.52	+0.1
145,581	+		EX31_RS13550	0.52	-1.2
145,581	+		EX31_RS13550	0.52	+0.8
145,581	+		EX31_RS13550	0.52	+0.1
145,581	+		EX31_RS13550	0.52	-0.1
145,581	+		EX31_RS13550	0.52	+0.0
145,582	-		EX31_RS13550	0.52	-0.4
145,582	-		EX31_RS13550	0.52	+1.2
145,582	-		EX31_RS13550	0.52	+0.2
145,582	-		EX31_RS13550	0.52	-0.3
145,582	-		EX31_RS13550	0.52	+0.6
145,582	-		EX31_RS13550	0.52	-0.6
145,582	-		EX31_RS13550	0.52	+0.1
145,582	-		EX31_RS13550	0.52	+0.8
145,582	-		EX31_RS13550	0.52	+0.8
145,582	-		EX31_RS13550	0.52	+0.9
145,582	-		EX31_RS13550	0.52	+0.5
145,582	-		EX31_RS13550	0.52	-0.2
145,610	+		EX31_RS13550	0.56	-0.0
145,611	-		EX31_RS13550	0.56	+0.0
145,668	+		EX31_RS13550	0.64	+0.3
145,668	+		EX31_RS13550	0.64	+0.5
145,668	+		EX31_RS13550	0.64	-0.1
145,668	+		EX31_RS13550	0.64	+0.3
145,668	+		EX31_RS13550	0.64	-0.0
145,668	+		EX31_RS13550	0.64	+0.8
145,669	-		EX31_RS13550	0.64	-0.1
145,669	-		EX31_RS13550	0.64	-0.9
145,669	-		EX31_RS13550	0.64	-0.3
145,669	-		EX31_RS13550	0.64	+0.4
145,692	+		EX31_RS13550	0.67	-0.3
145,692	+		EX31_RS13550	0.67	+0.1
145,692	+		EX31_RS13550	0.67	+0.3
145,693	-		EX31_RS13550	0.67	+0.2
145,693	-		EX31_RS13550	0.67	-0.5
145,693	-		EX31_RS13550	0.67	-0.1
145,871	+				+0.8
145,872	-				-0.1
145,872	-				+0.6
145,872	-				-0.3
145,890	+				-0.1
145,891	-				+0.3
145,892	+				+0.6
145,892	+				-0.3
145,893	-				+0.7